NO12G00080.1, NO12G00080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00080.1
Unique NameNO12G00080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length992
Alignment locationchr12:14766..15954 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:14766..15954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00080.1 vs.
Match: EWM26012.1 (fatty acid hydroxylase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 171.8 bits (434), Expect = 3.400e-39
Identity = 120/272 (44.12%), Postives = 153/272 (56.25%), Query Frame = 0 
Query:   25 ACFVLPSTPLLP---SPASIPRQYFDRRPSSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPL---PEERRGRMGPL---QAIQTWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATLRFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRL-LSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLG 287
            A F+LP+ P LP        P   F RRP++      +      +  P+    +  +H     L   P + R  + P     A+ +  +    P+S P  S  S +   PSP       K LVD RQL          + DF+VP TL +AL++FF+HPSI+LIL G+A L  GR   S P    SL  +  E +L+ LT+ GW+LQEW LHRFLLHSS  W GREIHAQHHALPFYHVSIDPPLLV VWGA+AC  GW+ +P+P VWTVLG
Sbjct:   32 ASFILPTRPSLPFLLQHTVDPTSNFPRRPTTSTSWQVSTIA---SSQPVGNTYWTQQHLNSLSLVNTPGQTRKLIVPAGKKPAVDSH-SISTLPVSAPRGSLPSQTSLLPSP-------KRLVDARQLPPSVVHQNL-ATDFSVPRTLSAALWMFFTHPSILLILCGLAGLVAGRFSFSGP--SSSLLQIFLECSLVLLTIVGWILQEWFLHRFLLHSSFDWFGREIHAQHHALPFYHVSIDPPLLVGVWGAIACILGWVFVPRPLVWTVLG 289
The following BLAST results are available for this feature:
BLAST of NO12G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26012.13.400e-3944.12fatty acid hydroxylase-like protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00080NO12G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00080.1NO12G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00080.1.cds1NO12G00080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00080.1.cds2NO12G00080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00080.1 ID=NO12G00080.1|Name=NO12G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG
CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG
TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA
TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC
CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA
GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA
GGCCATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCC
ACCGCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGC
TCTACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGA
CGCAACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGC
CCTCCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTT
GTTGGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCT
TCCTCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGA
CCGTGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTC
CACAGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGC
CCTCCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTAT
GGGGCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGG
GTTTGGACCGTGCTGGGGGTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAG
GGCAACGAGAGGGGGAGACGAGCGAGGGAAGGAAACAATAATTTGATATT
TGCATGATCTTGAAAGGATCAGTCATCATTGTCCGCCTCATA
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protein sequence of NO12G00080.1

>NO12G00080.1-protein ID=NO12G00080.1-protein|Name=NO12G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MANIACCTTAAAAAAAAGGALISRACFVLPSTPLLPSPASIPRQYFDRRP
SSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPLPEERRGRMGPLQAIQ
TWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATL
RFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPS
LPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPF
YHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGVSSGREKGKERATR
GGDERGKETII*
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mRNA from alignment at chr12:14766..15954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00080.1 ID=NO12G00080.1|Name=NO12G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at chr12:14766..15954+ (Nannochloropsis oceanica)
AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG
CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG
TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA
TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC
CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA
GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA
GGTATGTACGTCGCCAACCCTGATATCTGCCTTCATCTTTCCCGCGCATG
CCGGGCCGGAGCCTTGATGAAAAATTATTGAAAGCAAGCCATGCATTTTC
TCATATTCGCTCATTCCCTTTTTCGAACCTGCCGCTGTCATCTCCTTCTG
CCCACTCTCTTCGTTCCTCCCACTTCCCCCACCCGACCCCACCCTCAGGC
CATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACC
GCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCT
ACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGC
AACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCT
CCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTT
GGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCC
TCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCG
TGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCAC
AGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCT
CCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGG
GCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTT
TGGACCGTGCTGGGGGTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAGGGC
AACGAGAGGGGGAGACGAGCGAGGGAAGGAAACAATAATTTGATATTTGC
ATGATCTTGAAAGGATCAGTCATCATTGTCCGCCTCATA
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Coding sequence (CDS) from alignment at chr12:14766..15954+

>NO12G00080.1 ID=NO12G00080.1|Name=NO12G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr12:14766..15954+ (Nannochloropsis oceanica)
ATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAGCAGCAGCTGC
TGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCGTCAACACCCC
TCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGATCGTAGGCCT
TCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCACCTTTCACAGT
CTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCAGAAAGACAGC
CACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCAGGCCATACAG
ACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACCGCTCATC
TTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCTACAACAA
GCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGCAACTCTC
CGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCTCCGCCCT
CTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTTGGCATCG
CCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCCTCCCTCC
CTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCGTGGCAGG
CTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCACAGCTCTC
TCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCTCCCCTTC
TACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGGGCGCAGT
AGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTTTGGACCG
TGCTGGGGGTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAGGGCAACGAGA
GGGGGAGACGAGCGAGGGAAGGAAACAATAATTTGA
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Synonyms
Publications