NO12G00050.1, NO12G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00050.1
Unique NameNO12G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2606
Alignment locationchr12:9290..12078 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:9290..12078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00050NO12G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00050.1NO12G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00050.1.cds1NO12G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00050.1.cds2NO12G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00050.1 ID=NO12G00050.1|Name=NO12G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp
CAGTTATGTCAATCAACAGGTATGCTACATTCCTCGCCCTTTATCTTACC
CCACCTCCTTATCTCACTTCCGTCAATTATGACAAGGGATTACAAGTCAT
CTCCTTTCTCGAATGTCTTACGACTCCTCTTTCCACTCCCTTGTGTTTGG
GTCACAACGTACCTCTGTTCGTGCTCCTATCTGCCAGTGTTGCCTTGGCG
TAGCACCGCAATTCCGAGGCCCCTTTAGCAAAAGCGAGAGCTTGATTGCA
CTGTGGAAGGAAGCCACCATTCTCAAACCTGATCGATAAATATGTAGGGG
AGGGGATAGCGTCGGAGGGGGGAAGAGGGCGGGAGGGAATCGTGCAGAGC
AGCAGTCTGTCAGCTTTCCCGCTCTCTCACTTCTCTCAGAGCGATCCTCG
TACATGACTTGTAACCCTTCTTTTTAGTCCCTACTTACTACATACGTACC
ATTGCCTTGCAAATTGCTCCGGAGAGAGTGGCTGCCAAAGGGAGATGACC
ACGCAAAAGGCAAGGGACAGGAGGCCCATTACTACGGCACCAGGGTACTT
GAGAAGAAGTGACGACCACAAGGACCCTTTGCCCTTTCGGACCTTTTTCA
ACGAGGCAGCTACGACGGCTGAGGATCCCATGCTAGGGCGCACCATGGCT
TCTCTGCCTGCAGTCAAGGGTTTGTGTGAGGCAGATGGGTAGCATGGCCG
AGCAAGTTGCAGTTTTTATGGGCGAGTTGGCGACGAAGTGTGGTCATACC
TAGAAACTCAAGTACTCCTGTTGTATTAACTGTAGCCATACTTGACAGGT
AAGTGCATGACTCTTGTATGCATGTGCTTAGTCAGCGTGGAAGTTGCGAG
CGCCTTTTCCTGGTAATTTCCTGTCTAACATTTTACATTGCTTTGAGGCA
TTCCAACCCCGCCATGTCCTTATTTTACCGTGCCTCAGGCACAAAAGGTT
TCACACCATCACGACGACGACAGGGAGGTGGAGGTCTGCAAGGCACAATA
TGTGGACATAGCTGCTGTTTGTGCACGAAATGAACTTTGTCTTTTATTTC
AGGAAGGAAAGACTCCTACGAAAGCCGCGCATGGACGTCGTGTCAAGGCT
GACGCTCACTCCTCCCTCGCTCCAATTCACAAACACAGAGCAGGCAAGAT
GGAAATTATTATGTATTTTATCTGGGGAATCATATACATAATCTCAGGCT
TTGGTGTCCTGGCCTGTGCCTCTATCGTTCTTGTCATGGCCCGAGCCTGC
CTCTCCTCGGGTAAGCATATCCTTGCCGGCCTCCCTCCTCGCTTCGGAGA
CATCGAGGCCGCCAAGACTACCGAGCGCTTGCGCGGAAAAAAAAAAAAAA
GCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGGGAGGGGAGAAG
GAAGGACGGAGGAAGAGGCGGACACGCCGTCGTCGCTGGGGATGGAGGAC
ACAGGGTTTGTGGATGTAGAGATTGGGCCGGAGGAGGAGAAGGAAGAAGG
AAGGGAGGGTAGGGAGAGGAGGGAGGGAGATAGGGGAGTGGAGCCTAGCA
GCGGCGGGATGGTGGTGGAGTTGTCGGTCATGGCGAGTGGAAGCAAGGTG
CTGGCGCAGTAGGGGGAGGGAGGGAGAGTGGGGAGAAAGGGAGAGAGTGG
AGGGAGGGAGAGACATATGGAGAGAGAGAGGAAGGAAGGGAAGGAGAAAG
ATTGACGAAGAAGAAGGTTTTGTAAGGCGGGTTGGCGGTGTCAACGTGAT
GAGGGAGGAAGGAGGGAGGGACAGAAAGAGGAGGAGCAGCAGTAAGATCA
TTCAAGCAAAAGACATGTTAGAAAAAGTGAGACTTGGAAAGAGAGTAAGA
CGCTGTTTGACCACTGAGTGCAAGAATACAAATATAAGAGGAAGTCAGGA
GAGAGGGGGGAATGGAGTGAGCGAGGCAGGGGAAGGAAAGTGAATTCGGA
AAAAGAGCAGTCGGAGGAGGTTATTGGATTAGAAATGGCGCTGGCCGGAA
CGTTCTTTCTTAGAAATTTGACGATCAGTCAGACAGTCAGGCAGTCAACC
AATCAATCAATCAGTCAGCCAGCCAGTCAGTGAGGAAGTACGCAATTCAG
TCACTCATCTATCTAAGTATCTTTCAGTCTGTGGGGGTCTATTATGTCCA
GCGTTCTGCGAGTGCGAGACGCTGTCACAGGGACGGGACGAAGAGGCAAA
CAAAGTAAAGAAGGAGAAAGAGAGGGCCCGAGAGAACATAGGAGCAGAGG
GAGGGCAGGAGGGAGGTGACGGGTGACTTGAGCACTACCATCATTAAATG
AAGAATTTGAACCACTCTGAGAGTAGCACATCCACATCCGTCAGGCAAAC
TGACCCAGAGGGATAGGAATTAAGAGAGAGAAAGAGAGAGGGACGGTGAA
AGAATAAGAGGAGAGACTGAAGGGCAAAGGTACAAGAAGCAAGTCAAGTA
AAAACGAGCATGTAAATCGACATGTAATTAATGTCCCTACCTCTTCATCC
TTCTACCTCCGATCGCCTAAAAGAAGCAAAACAAACCCACCATACACACA
CTCACA
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protein sequence of NO12G00050.1

>NO12G00050.1-protein ID=NO12G00050.1-protein|Name=NO12G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MEIIMYFIWGIIYIISGFGVLACASIVLVMARACLSSGKHILAGLPPRFG
DIEAAKTTERLRGKKKKSSNSNSNSNSNSNSSSSSSSSSSSSSSNRREGR
RKDGGRGGHAVVAGDGGHRVCGCRDWAGGGEGRRKGG*
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mRNA from alignment at chr12:9290..12078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00050.1 ID=NO12G00050.1|Name=NO12G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2789bp|location=Sequence derived from alignment at chr12:9290..12078- (Nannochloropsis oceanica)
CAGTTATGTCAATCAACAGGTATGCTACATTCCTCGCCCTTTATCTTACC
CCACCTCCTTATCTCACTTCCGTCAATTATGACAAGGGATTACAAGTCAT
CTCCTTTCTCGAATGTCTTACGACTCCTCTTTCCACTCCCTTGTGTTTGG
GTCACAACGTACCTCTGTTCGTGCTCCTATCTGCCAGTGTTGCCTTGGCG
TAGCACCGCAATTCCGAGGCCCCTTTAGCAAAAGCGAGAGCTTGATTGCA
CTGTGGAAGGAAGCCACCATTCTCAAACCTGATCGATAAATATGTAGGGG
AGGGGATAGCGTCGGAGGGGGGAAGAGGGCGGGAGGGAATCGTGCAGAGC
AGCAGTCTGTCAGCTTTCCCGCTCTCTCACTTCTCTCAGAGCGATCCTCG
TACATGACTTGTAACCCTTCTTTTTAGTCCCTACTTACTACATACGTACC
ATTGCCTTGCAAATTGCTCCGGAGAGAGTGGCTGCCAAAGGGAGATGACC
ACGCAAAAGGCAAGGGACAGGAGGCCCATTACTACGGCACCAGGGTACTT
GAGAAGAAGTGACGACCACAAGGACCCTTTGCCCTTTCGGACCTTTTTCA
ACGAGGCAGCTACGACGGCTGAGGATCCCATGCTAGGGCGCACCATGGCT
TCTCTGCCTGCAGTCAAGGGTTTGTGTGAGGCAGATGGGTAGCATGGCCG
AGCAAGTTGCAGTTTTTATGGGCGAGTTGGCGACGAAGTGTGGTCATACC
TAGAAACTCAAGTACTCCTGTTGTATTAACTGTAGCCATACTTGACAGGT
AAGTGCATGACTCTTGTATGCATGTGCTTAGTCAGCGTGGAAGTTGCGAG
CGCCTTTTCCTGGTAATTTCCTGTCTAACATTTTACATTGCTTTGAGGCA
TTCCAACCCCGCCATGTCCTTATTTTACCGTGCCTCAGGCACAAAAGGTT
TCACACCATCACGACGACGACAGGGAGGTGGAGGTCTGCAAGGCACAATA
TGTGGACATAGCTGCTGTTTGTGCACGAAATGAACTTTGTCTTTTATTTC
AGGAAGGAAAGACTCCTACGAAAGCCGCGCATGGACGTCGTGTCAAGGCT
GACGCTCACTCCTCCCTCGCTCCAATTCACAAACACAGAGCAGGCAAGAT
GGAAATTATTATGTATTTTATCTGGGGAATCATATACATAATCTCAGGCT
TTGGTGTCCTGGCCTGTGCCTCTATCGTTCTTGTGTACGTATTTCGGGTT
TGCGCCCTCCCCGTCCTCCTCCTTGTTGTCCCTTCTTGCTAGCTACGCCA
TGCCCCTTCTCACTGCCACCTATTGGTTGTGCAATTCCCTGGCAAGCAAC
TCTGTTAAATATTGCCCATGTCTTAACAGTTCCTTTATTACCTCCCAACC
CTCTCCTCCCCAACCAGCATGGCCCGAGCCTGCCTCTCCTCGGGTAAGCA
TATCCTTGCCGGCCTCCCTCCTCGCTTCGGAGACATCGAGGCCGCCAAGA
CTACCGAGCGCTTGCGCGGAAAAAAAAAAAAAAGCAGCAACAGCAACAGC
AACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAGGAGGGAGGGGAGAAGGAAGGACGGAGGAAGAG
GCGGACACGCCGTCGTCGCTGGGGATGGAGGACACAGGGTTTGTGGATGT
AGAGATTGGGCCGGAGGAGGAGAAGGAAGAAGGAAGGGAGGGTAGGGAGA
GGAGGGAGGGAGATAGGGGAGTGGAGCCTAGCAGCGGCGGGATGGTGGTG
GAGTTGTCGGTCATGGCGAGTGGAAGCAAGGTGCTGGCGCAGTAGGGGGA
GGGAGGGAGAGTGGGGAGAAAGGGAGAGAGTGGAGGGAGGGAGAGACATA
TGGAGAGAGAGAGGAAGGAAGGGAAGGAGAAAGATTGACGAAGAAGAAGG
TTTTGTAAGGCGGGTTGGCGGTGTCAACGTGATGAGGGAGGAAGGAGGGA
GGGACAGAAAGAGGAGGAGCAGCAGTAAGATCATTCAAGCAAAAGACATG
TTAGAAAAAGTGAGACTTGGAAAGAGAGTAAGACGCTGTTTGACCACTGA
GTGCAAGAATACAAATATAAGAGGAAGTCAGGAGAGAGGGGGGAATGGAG
TGAGCGAGGCAGGGGAAGGAAAGTGAATTCGGAAAAAGAGCAGTCGGAGG
AGGTTATTGGATTAGAAATGGCGCTGGCCGGAACGTTCTTTCTTAGAAAT
TTGACGATCAGTCAGACAGTCAGGCAGTCAACCAATCAATCAATCAGTCA
GCCAGCCAGTCAGTGAGGAAGTACGCAATTCAGTCACTCATCTATCTAAG
TATCTTTCAGTCTGTGGGGGTCTATTATGTCCAGCGTTCTGCGAGTGCGA
GACGCTGTCACAGGGACGGGACGAAGAGGCAAACAAAGTAAAGAAGGAGA
AAGAGAGGGCCCGAGAGAACATAGGAGCAGAGGGAGGGCAGGAGGGAGGT
GACGGGTGACTTGAGCACTACCATCATTAAATGAAGAATTTGAACCACTC
TGAGAGTAGCACATCCACATCCGTCAGGCAAACTGACCCAGAGGGATAGG
AATTAAGAGAGAGAAAGAGAGAGGGACGGTGAAAGAATAAGAGGAGAGAC
TGAAGGGCAAAGGTACAAGAAGCAAGTCAAGTAAAAACGAGCATGTAAAT
CGACATGTAATTAATGTCCCTACCTCTTCATCCTTCTACCTCCGATCGCC
TAAAAGAAGCAAAACAAACCCACCATACACACACTCACA
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Coding sequence (CDS) from alignment at chr12:9290..12078-

>NO12G00050.1 ID=NO12G00050.1|Name=NO12G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr12:9290..12078- (Nannochloropsis oceanica)
ATGGAAATTATTATGTATTTTATCTGGGGAATCATATACATAATCTCAGG
CTTTGGTGTCCTGGCCTGTGCCTCTATCGTTCTTGTCATGGCCCGAGCCT
GCCTCTCCTCGGGTAAGCATATCCTTGCCGGCCTCCCTCCTCGCTTCGGA
GACATCGAGGCCGCCAAGACTACCGAGCGCTTGCGCGGAAAAAAAAAAAA
AAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGGGAGGGGAGA
AGGAAGGACGGAGGAAGAGGCGGACACGCCGTCGTCGCTGGGGATGGAGG
ACACAGGGTTTGTGGATGTAGAGATTGGGCCGGAGGAGGAGAAGGAAGAA
GGAAGGGAGGGTAG
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Synonyms
Publications