NO11G03460.1, NO11G03460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03460.1
Unique NameNO11G03460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5189
Alignment locationchr11:1113675..1119497 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1113675..1119497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G03460.1 vs.
Match: EWM24843.1 (CD36 antigen [Nannochloropsis gaditana])

HSP 1 Score: 740.7 bits (1911), Expect = 6.400e-210
Identity = 348/579 (60.10%), Postives = 448/579 (77.37%), Query Frame = 0
Query:  529 SLVWRQWAVGDVIQTFNGASLPESVIPETPPELSFYLASVGKPVWTTGGVIVGESEAPAPISKARWSIRQTKCLFDTVLRKMDAEIFAEDLLGLPTPPNKTPRKPFVNSRATKTATAEASKAALQECLMSEDAWDVMLGYLDYLGQKLVAPYIQRHVLDAQGGLVVTRSVQSWLEGRVEPILALALQAGDPRIMFGFMGQDKQMEAPGKCTRLADVENAYSACAPVLSAADSKTVSYYKKVANTYHTGKDHPERLGALAKYKGDDVAWGIWPRDSVEILGGAEKEEGSVLQYGFSEGEQFPPLNRIMQATTEHVGEGLLAGLEQTLSTLAFEDG----------TAEELEKDTDLMVFLAKFIMPLRFRYEGPSDSVQGIEGLMRFGLSPINFSPQRRDAARFSMDGPGARDGLFNLTDLQSTPLFLSTPHYMGYPQLNSLECLSVIAYDPVGEQDAAMGSHLDIDPYTGRTMSAAVRMQLSTSTADGNKVYDVFHDKAYAAEVIPLLWMTQRAEVGPADAVLFKKLCSAPLTAVEQFQRYTLLVGIALTVLGLVMVVAGCFFARRK--RSEEKTADSR 1096
            SL WRQWAVGDV+QTF+GA+LPESV+PETPPELSFY+A+VGKPVWT  G++VGE+E P PIS ARWS++QTKC+ D +LR+ DA+ FAE +LGLP  P +T RK F++  +    + EASKAAL++CL+S+ AW VMLGY DYLG+    P+++ HV++A GGL+VTRSVQSWLEGR EPIL+ +L   DPRI FG M +D++MEAPGKC +++D+EN YSAC+PV +  D  T+ YYKKVANTYHTGK HP+RLGA+AKYKGDDVAWGIWPR  + ILGGAE  +GSV+QYG+SEGEQFPPLNRI++AT  +VG GL+AGLE+T ++LA              T E +E  TD++VF++ F++P+RF+Y GP   +QG+ GL RFGLSP+NFSP+RRDAA +SMDGP AR+GL N+TD++  P FLS PHY+G P+L SLECLS +A  P GE +AA+GSHLDI+PYTGRT+SA+V +Q+S+ST    +VYDVFH + Y AEV+PLLWMT +AEVGP DA LF++L +APL  V + QR TLLVGI    +GL + + G F   RK  R  +  +D+R
Sbjct:   16 SLTWRQWAVGDVLQTFSGAALPESVLPETPPELSFYMAAVGKPVWTPVGIVVGENEVPPPISPARWSLKQTKCMRDLILRETDADFFAETVLGLPPSPTQTSRKTFLDVESAMARSPEASKAALEQCLVSQGAWSVMLGYFDYLGRTFAGPHLREHVVEANGGLIVTRSVQSWLEGRPEPILSSSLPPNDPRIWFGIMTEDEKMEAPGKCVQVSDIENMYSACSPVTAPTDPTTLLYYKKVANTYHTGKKHPDRLGAMAKYKGDDVAWGIWPRGKIPILGGAEAGQGSVVQYGYSEGEQFPPLNRILRATEAYVGPGLVAGLEKTFNSLAATGNATTTTALAAMTEETVESPTDMLVFMSNFVLPVRFQYRGPRAPIQGLTGLHRFGLSPLNFSPRRRDAALYSMDGPRAREGLLNMTDIKGAPFFLSPPHYLGCPKLQSLECLSAVATIPQGESEAAVGSHLDIEPYTGRTLSASVSLQVSSSTMGAARVYDVFHAETYTAEVVPLLWMTHQAEVGPEDAALFQELVNAPLDFVTKVQRLTLLVGILTAGVGLFLALLGFFCLCRKSGRGSKTESDAR 594          
The following BLAST results are available for this feature:
BLAST of NO11G03460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24843.16.400e-21060.10CD36 antigen [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03460NO11G03460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03460.1NO11G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03460.1.cds1NO11G03460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03460.1.cds2NO11G03460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03460.1.cds3NO11G03460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03460.1.cds4NO11G03460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03460.1.cds5NO11G03460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03460.1 ID=NO11G03460.1|Name=NO11G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=5189bp
TAAACGGCTGGGCAGACGTTGGGAAAATGACGAAGTGACTAAATGACCCT
CCTGGGCTTCTGCATCCCTAAGTTTTTACCCTAGGGCCCTGTATGCTCTA
ATTGTCAAGTTATCTTTCACAATAGCGAAGGACAGGTCATCTTGCAGCCC
TTCTCGAATTTACGTATGTACTACTCGATCCGGCTGGCTGACAACACCAC
CCCATCTCCGTCTTCGTCCTCACATCCACAGCGTGCCCAAGGCCCATATG
GAAGAATGCTCAGAGCAGCGACCACCCCTGGAGACTGAATCTCCGTCTCT
CCAGCAAGATGAGCTCCTTTCTATGGCCCGTATCCTACCTTCAAACGAAG
AAGATCACGAGGACGGCTACTCAGAGACGGCAACAGCTGACGACATCGAC
CTACCATCCCCTTCTTCCCCACGACCTGACCGCCGCCACTCCAGCCCCCT
GTCAGAACCCAGCAATTATAGTGCACACAGACACAGTCATACCACTTGTC
GGGATGTTGAGGCTGGTCTTGACTCCAGCAATCTGTCCAGGTCCTCTTCT
TCTTCTATTGAACCTTCGCCTGCCTCAACGGCGACTTCGGCATCGACCGC
CGCGGCCGCTCTTGCAGGTACCGCTGCCCTGCGTGCTCTTCCTGCAGGTC
ATAAAACCTCTAATTCTTCTGCACTCGCTCTGAATTCCTCTCCTTCTTGT
GCTGTCAAGGCCGGGAGGTATGTGCGTAATTTTGGCCTTCTGTTCCTCGG
CATTGGTTTGTTGGCCTTGGGGGCAGCGATCTTTAGCCACACCTACCTTC
CCGCCTGGCGCAATAAAAAGCTTCTAACCTCCTTAGTAGTAGACTCTACC
AAACACCCTGGTTATGCGACGTGGGCTAATCCCTCGTCCAAGGAAAAAGG
GGGAGGGGACTCGCCTATGTACCAGACATTTTATTTCTTCCACCTTGTCA
ACCCGGCGAATTTTTTGCAGGGCAGGAGGCCCGTGTACCTGGAGAAGGGG
CCCTATACCTTCCAGCAGAAGAAAAAAAAAGTGGAGGTGGAGTTCTCGGA
GGATGGGACGCTGGTGTCGTACGTGACGCTGGTGCAGAACGAGTATAAGC
CGGACAAATCTGGCGCCGATGTCCTCCTGTCTGACGAAGTGAGCATGATA
AATCTCGCCTACTCCACGGCTGTCGCCACTTTTGGGAGCGAATCAAACCT
CCTTCGCGTCGGCACCCGCATGGCGTTGGGGGAGGTCGAACGGGCATTGG
AAGCGGAATTTTTGCCCACCTTGAAAGAGAATGCGCTGGTCACCGGGGCA
GTCAAGGCGCTGGCATTGACGGAGACGAACCTCAACAAGCTGAACTATCC
CCAGGACGGAGTCGCGATTCGATGGGGAGGTGGCTGCGTGGAGACTGGGA
TGTTCACAAAACAGTGCGGATTTGAGAAGGCTCCCTTTCTAAAGTCTATG
ATGGGGAAGGAAGATCCGCGGGATGTCGAGTTCTTCCAGATGTGTCTGGA
TCCTGGGCTGGGGTCGGAGCCCGGACAGTTCATCCCACTGGCAACTGTAC
ATGAACTCTGGAACACGACCAATCCTCTCTCTATTTTCAGTGTGAAAAGG
GTCAACACAAGCACGCGTGTTGGCGTCTCACACTGGTTGAATGGCGATGC
GGACATGCGAGACACTCTCATGGCTCACTTCAGCCTCAACACCTACCAGT
ACACCAAGCTCACAAACTACGTCCGCACGATTTACGAATCCCCGCTATTG
GAATACTCTGTGGTGAAGAATTTCCTCCAAAGTTTACCTCCTGGGGAGAT
CGAATCCGCGAACGAGGTCGAAGACTGGTCGAGTCTCGTGTGGCGACAGT
GGGCGGTCGGGGACGTGATCCAGACCTTCAATGGCGCGAGTTTGCCCGAA
TCGGTCATTCCTGAGACACCTCCCGAACTCTCTTTCTATTTGGCTTCAGT
TGGGAAACCCGTCTGGACGACCGGAGGAGTGATCGTGGGTGAATCTGAGG
CCCCTGCACCCATCAGTAAGGCACGATGGTCAATACGCCAAACTAAATGT
CTGTTTGACACGGTTCTGCGAAAGATGGATGCGGAAATTTTTGCCGAGGA
CCTCTTAGGCTTGCCCACGCCTCCAAACAAAACGCCCCGCAAGCCTTTCG
TGAACTCGCGAGCAACAAAGACCGCCACAGCGGAAGCGAGCAAGGCAGCA
CTTCAAGAGTGCCTTATGTCAGAAGACGCGTGGGACGTCATGCTTGGTTA
CCTCGACTACCTTGGCCAGAAACTGGTGGCGCCCTATATACAACGCCACG
TCCTGGATGCACAAGGCGGGCTGGTCGTGACTCGTTCAGTCCAATCCTGG
TTGGAGGGACGCGTAGAACCCATCTTGGCTTTAGCCCTCCAGGCTGGCGA
TCCTCGAATTATGTTTGGCTTCATGGGGCAGGATAAGCAGATGGAGGCAC
CTGGAAAGTGCACGCGGCTGGCAGACGTCGAAAATGCGTACTCTGCATGT
GCCCCGGTGTTGTCGGCTGCAGACTCTAAGACGGTGAGCTACTACAAAAA
GGTCGCAAATACCTATCACACTGGGAAAGACCACCCGGAAAGGCTAGGTG
CGCTGGCAAAATACAAGGGCGATGACGTGGCGTGGGGCATCTGGCCTCGG
GATTCCGTGGAGATCTTGGGCGGGGCGGAGAAAGAGGAAGGAAGTGTATT
ACAGTACGGCTTCTCAGAGGGGGAGCAATTCCCGCCTCTGAACCGTATCA
TGCAGGCAACGACGGAGCATGTGGGAGAGGGACTCTTGGCCGGACTGGAG
CAAACGCTCAGCACACTGGCCTTCGAGGATGGTACGGCGGAAGAGTTGGA
GAAGGACACGGACCTGATGGTCTTCCTGGCCAAGTTTATCATGCCCTTAC
GGTTCCGGTACGAAGGGCCCTCTGATTCAGTGCAAGGCATCGAGGGCTTA
ATGCGTTTTGGATTATCACCAATCAATTTCTCGCCCCAGCGCCGAGACGC
AGCACGCTTTTCAATGGACGGGCCGGGCGCGAGGGACGGACTCTTCAACC
TCACCGACCTCCAAAGTACGCCACTTTTTCTAAGCACCCCGCACTACATG
GGCTATCCGCAGCTCAACTCGTTGGAGTGTTTGAGTGTCATTGCCTACGA
TCCAGTCGGCGAGCAAGACGCTGCCATGGGGAGTCATCTGGATATAGATC
CCTACACGGGAAGGACAATGTCAGCAGCGGTTCGTATGCAGCTGTCAACC
TCAACAGCAGATGGGAACAAGGTCTATGATGTGTTCCATGACAAAGCTTA
CGCTGCTGAGGTTATTCCACTACTGTGGATGACGCAGCGGGCAGAAGTGG
GGCCAGCGGACGCGGTATTATTCAAGAAGCTGTGTTCTGCGCCGCTAACC
GCGGTCGAGCAATTCCAAAGATATACCTTGCTGGTAGGGATTGCGTTGAC
GGTGTTGGGTCTGGTAATGGTAGTGGCCGGCTGTTTCTTTGCTCGCAGAA
AGCGAAGTGAAGAGAAGACTGCAGATTCTCGGGGATCCACCATTAATATT
CTTTGAGTTTGACACCACACCAACGCAACGAAAGGCCATAAAATGAAGAA
TACAAGAGAGTCAATTTGTGAAATCGATTCCCATTTTAGTGCTGTGCAGG
TGCTTGTGAAGATGTGTGTGGGCGCAAGTGTGAGCAGAATGCAAAAGAGG
GACACTTTCCAGGGAAAAACACGAAAGAGATTTGCTTTAAGTTTGAGACG
CGACCAAATAATTGAATCGTAAATTATTTTTGTAATTATTGTAATTTGGT
TGTGACAGGTAACGACTATGCCAATACGAACAACTGGGAGGGAACAAAAG
GCCGGAAGCTTCTCGCTAATTAGAAGCAGAAATAGGACACCTTGCATGAT
AAACCTAAAATACAGCTTCTACGTTTTTTTGACTCGAGAATTTGATCACG
CAGCCAACGTCCATATCTTCATTATGTTCTGGCGGTCGCCGCTTCCATAG
AATCTTCTCTCTAAGTTCCTCTTCCTCCTCCACATCCTCATTTTCTTCCC
CTCCTTCCATTAAGGGTAGGTTGGGAAAGTCTGTGACGCACAAGTCTACA
AAAGCTGACTTGACTACTTTATCCTCTTTCTCTCTCTCGCTCCTCGTTTT
GCTTTCCACCTGCTTCTCCTCTTCCCCTTCATCTCCCTTCTCCTCCTCCT
TTCTCTTCCACGATACAAGGGTCTCTCTCATCCAGGGCAACAATGGGAGG
ATGCAATCACTCTCATCCTTCTCCTTCTCGCTCGCCAATGTCCTCTCTTC
GTAGCTCCTCAATCTATTTCCAACCAACAACACATTCTGTAGGCAATCGG
GTGACCAATTGGCCCATAAGAGATTACTGTAAAGACGACGATGACAGCAG
GGCATAAAAAAGACTGTCGGTGTGAGGGCCCGGCGTTTGCCGTGTTCGTT
GTGAGGGAGGACGTGCCACCCGAGAAGGGTCAGGAGATGAGTGTCCAAGC
CATCAAACAAGGGGTCGTAGACTTCGGCTGTTAAGAGAGGAGGAGAAGAG
GGAGAGGGGGGGAGGGAGCTAAGGAGAATGTGAAGGCGGTCCTTAAGAAG
ACAGGCACATGCCAACTGCCATAGTGGATGACTATCGGTGCTCTGTATGC
TTCCCAAGCCGTAGCAGACTAGTGTGCGGACTTCTCGATCTTCCCTCCCT
CCTGTTTTCCATCCCGACCCAGATGTGAAGCGCGACAGGAGCGCATGTTC
GAGGTTGGAATAGAAAGCAGTGGGTGATAGCATTCTTTTGGCAATCTCTA
CGGCAGCGAGCAGGCGGGTGGTCTCGCATTGTATATCAGCGGACGTGTAC
GTATCCCTATGCGTGGATACAGGTGCCGGGATAGGGTGAGGGACGAGATG
GGCAAGGGGAAGGGCCAGGGCTATGCTATGACGGGCGCCCACACACAAGC
AGATATCAAGATCCATATGTCCACAGTACAACACGGTGACGTACCTTAGG
CCTCCCCCATGAGGTTGGTGGAAGGAGGCAGGGAATGCCGTGGTGCTGCT
GCTGCGGCTGCTGGGCTTTCTTTTTGCGCTTTTGCCCTTCTTGCTGGACG
TGACAAATACCCATTCTGTCTCTTTTTCTTTCTTTTTGTTGTCATCGTCC
TTGTCATCATCGGCGCCGGTCTCTGCCATCTTGCCCTGT
back to top

protein sequence of NO11G03460.1

>NO11G03460.1-protein ID=NO11G03460.1-protein|Name=NO11G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1103bp
MEECSEQRPPLETESPSLQQDELLSMARILPSNEEDHEDGYSETATADDI
DLPSPSSPRPDRRHSSPLSEPSNYSAHRHSHTTCRDVEAGLDSSNLSRSS
SSSIEPSPASTATSASTAAAALAGTAALRALPAGHKTSNSSALALNSSPS
CAVKAGRYVRNFGLLFLGIGLLALGAAIFSHTYLPAWRNKKLLTSLVVDS
TKHPGYATWANPSSKEKGGGDSPMYQTFYFFHLVNPANFLQGRRPVYLEK
GPYTFQQKKKKVEVEFSEDGTLVSYVTLVQNEYKPDKSGADVLLSDEVSM
INLAYSTAVATFGSESNLLRVGTRMALGEVERALEAEFLPTLKENALVTG
AVKALALTETNLNKLNYPQDGVAIRWGGGCVETGMFTKQCGFEKAPFLKS
MMGKEDPRDVEFFQMCLDPGLGSEPGQFIPLATVHELWNTTNPLSIFSVK
RVNTSTRVGVSHWLNGDADMRDTLMAHFSLNTYQYTKLTNYVRTIYESPL
LEYSVVKNFLQSLPPGEIESANEVEDWSSLVWRQWAVGDVIQTFNGASLP
ESVIPETPPELSFYLASVGKPVWTTGGVIVGESEAPAPISKARWSIRQTK
CLFDTVLRKMDAEIFAEDLLGLPTPPNKTPRKPFVNSRATKTATAEASKA
ALQECLMSEDAWDVMLGYLDYLGQKLVAPYIQRHVLDAQGGLVVTRSVQS
WLEGRVEPILALALQAGDPRIMFGFMGQDKQMEAPGKCTRLADVENAYSA
CAPVLSAADSKTVSYYKKVANTYHTGKDHPERLGALAKYKGDDVAWGIWP
RDSVEILGGAEKEEGSVLQYGFSEGEQFPPLNRIMQATTEHVGEGLLAGL
EQTLSTLAFEDGTAEELEKDTDLMVFLAKFIMPLRFRYEGPSDSVQGIEG
LMRFGLSPINFSPQRRDAARFSMDGPGARDGLFNLTDLQSTPLFLSTPHY
MGYPQLNSLECLSVIAYDPVGEQDAAMGSHLDIDPYTGRTMSAAVRMQLS
TSTADGNKVYDVFHDKAYAAEVIPLLWMTQRAEVGPADAVLFKKLCSAPL
TAVEQFQRYTLLVGIALTVLGLVMVVAGCFFARRKRSEEKTADSRGSTIN
IL*
back to top

mRNA from alignment at chr11:1113675..1119497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03460.1 ID=NO11G03460.1|Name=NO11G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=5823bp|location=Sequence derived from alignment at chr11:1113675..1119497+ (Nannochloropsis oceanica)
TAAACGGCTGGGCAGACGTTGGGAAAATGACGAAGTGACTAAATGACCCT CCTGGGCTTCTGCATCCCTAAGTTTTTACCCTAGGGCCCTGTATGCTCTA ATTGTCAAGTTATCTTTCACAATAGCGAAGGACAGGTCATCTTGCAGCCC TTCTCGAATTTACGTATGTACTACTCGATCCGGCTGGCTGACAACACCAC CCCATCTCCGTCTTCGTCCTCACATCCACAGCGTGCCCAAGGCCCATATG GAAGAATGCTCAGAGCAGCGACCACCCCTGGAGACTGAATCTCCGTCTCT CCAGCAAGATGAGCTCCTTTCTATGGCCCGTATCCTACCTTCAAACGAAG AAGATCACGAGGACGGCTACTCAGAGACGGCAACAGCTGACGACATCGAC CTACCATCCCCTTCTTCCCCACGACCTGACCGCCGCCACTCCAGCCCCCT GTCAGAACCCAGCAATTATAGTGCACACAGACACAGTCATACCACTTGTC GGGATGTTGAGGCTGGTCTTGACTCCAGCAATCTGTCCAGGTCCTCTTCT TCTTCTATTGAACCTTCGCCTGCCTCAACGGCGACTTCGGCATCGACCGC CGCGGCCGCTCTTGCAGGTACCGCTGCCCTGCGTGCTCTTCCTGCAGGTC ATAAAACCTCTAATTCTTCTGCACTCGCTCTGAATTCCTCTCCTTCTTGT GCTGTCAAGGCCGGGAGGTATGTGCGTAATTTTGGCCTTCTGTTCCTCGG CATTGGTTTGTTGGCCTTGGGGGCAGCGATCTTTAGCCACACCTACCTTC CCGCCTGGCGCAATAAAAAGCTTCTAACCTCCTTAGTAGTAGACTCTACC AAACACCCTGGTTATGCGACGTGGGCTAATCCCTCGTCCAAGGAAAAAGG GGGAGGGGACTCGCCTATGTACCAGACATTTTATTTCTTCCACCTTGTCA ACCCGGCGAATTTTTTGCAGGGCAGGAGGCCCGTGTACCTGGAGAAGGGG CCCTATACCTTCCAGCAGAAGAAAAAAAAAGTGGAGGTGGAGTTCTCGGA GGATGGGACGCTGGTGTCGTACGTGACGCTGGTGCAGAACGAGTATAAGC CGGTACGTTTCTCTGGGGCATTGAGTAAAATATGCACTCTTCTCTTTTCC AAAAATGTTATCCATGATAATATGAGCGCTTTCTCCTCCCCTTTCCCCCC CACTTCTTCCTCCTCCCTCTCTAGGACAAATCTGGCGCCGATGTCCTCCT GTCTGACGAAGTGAGCATGATAAATCTCGCCTACTCCACGGCTGTCGCCA CTTTTGGGAGCGAATCAAACCTCCTTCGCGTCGGCACCCGCATGGCGTTG GGGGAGGTCGAACGGGCATTGGAAGCGGAATTTTTGCCCACCTTGAAAGA GAATGCGCTGGTCACCGGGGCAGTCAAGGCGCTGGCATTGACGGAGACGA ACCTCAACAAGCTGAACTATCCCCAGGACGGAGTCGCGATTCGATGGGGA GGTGGCTGCGTGGAGACTGGGATGTTCACAAAACAGTGCGGATTTGAGAA GGCTCCCTTTCTAAAGTCTATGATGGGGAAGGAAGATCCGCGGGATGTCG AGTTCTTCCAGATGTGTCTGGATCCTGGGCTGGGGTCGGAGCCCGGACAG GTAGGGTGGTGGATGATGAGGGACGGAGGGTGGGTGTAAAGAGGACGTGG GAAGGAAAGGTACAGTGAAGTAGATAGAAAGGTGATGGAAGGGACTGCAC AGCCGGGGTTTGGTCTTTTTCATCACGGGTTATGGTTATGGTATTTTTCA TTATTAATGGCGATGATGAGAACTCGTCATTTACTTTTCCTTTTTCCCCT TGCATCTCTCTCCCTCCCTTTCTCCCCTTTCAGTTCATCCCACTGGCAAC TGTACATGAACTCTGGAACACGACCAATCCTCTCTCTATTTTCAGTGTGA AAAGGGTCAACACAAGCACGCGTGTTGGCGTCTCACACTGGTTGAATGGC GATGCGGACATGCGAGACACTCTCATGGCTCACTTCAGGTATCGTGGGGG GGGAGGGGAGAGAGGGCAGGAAGGCAAGAGAGGATTTCAGCTGGCTAGGT GTGCACTCGGGCGTAATTTTATATCTTGCTCCTTATTTTATCTCTCACAT GTGATTCTCCTATGTTCCCTCATGCATCACCTTTCATCCTGTCAGCCTCA ACACCTACCAGTACACCAAGCTCACAAACTACGTCCGCACGATTTACGAA TCCCCGCTATTGGAATACTCTGTGGTGAAGAATTTCCTCCAAAGTTTACC TCCTGGGGAGATCGAATCCGCGAACGAGGTCGAAGACTGGTCGAGGTAAA TATCGGGGGGGACGAGTGTAGTGGGTCAAAACCGTTGTGCACGGGACACC GTGCTCCAGACTTTTCGCTTTTGGTCTTTATTGCTTTCCTCACTCATCCC CTTTTTCTATAACAAAGTCTCGTGTGGCGACAGTGGGCGGTCGGGGACGT GATCCAGACCTTCAATGGCGCGAGTTTGCCCGAATCGGTCATTCCTGAGA CACCTCCCGAACTCTCTTTCTATTTGGCTTCAGTTGGGAAACCCGTCTGG ACGACCGGAGGAGTGATCGTGGGTGAATCTGAGGCCCCTGCACCCATCAG TAAGGCACGATGGTCAATACGCCAAACTAAATGTCTGTTTGACACGGTTC TGCGAAAGATGGATGCGGAAATTTTTGCCGAGGACCTCTTAGGCTTGCCC ACGCCTCCAAACAAAACGCCCCGCAAGCCTTTCGTGAACTCGCGAGCAAC AAAGACCGCCACAGCGGAAGCGAGCAAGGCAGCACTTCAAGAGTGCCTTA TGTCAGAAGACGCGTGGGACGTCATGCTTGGTTACCTCGACTACCTTGGC CAGAAACTGGTGGCGCCCTATATACAACGCCACGTCCTGGATGCACAAGG CGGGCTGGTCGTGACTCGTTCAGTCCAATCCTGGTTGGAGGGACGCGTAG AACCCATCTTGGCTTTAGCCCTCCAGGCTGGCGATCCTCGAATTATGTTT GGCTTCATGGGGCAGGATAAGCAGATGGAGGCACCTGGAAAGTGCACGCG GCTGGCAGACGTCGAAAATGCGTACTCTGCATGTGCCCCGGTGTTGTCGG CTGCAGACTCTAAGACGGTGAGCTACTACAAAAAGGTCGCAAATACCTAT CACACTGGGAAAGACCACCCGGAAAGGCTAGGTGCGCTGGCAAAATACAA GGGCGATGACGTGGCGTGGGGCATCTGGCCTCGGGATTCCGTGGAGATCT TGGGCGGGGCGGAGAAAGAGGAAGGAAGTGTATTACAGTACGGCTTCTCA GAGGGGGAGCAATTCCCGCCTCTGAACCGTATCATGCAGGCAACGACGGA GCATGTGGGAGAGGGACTCTTGGCCGGACTGGAGCAAACGCTCAGCACAC TGGCCTTCGAGGATGGTACGGCGGAAGAGTTGGAGAAGGACACGGACCTG ATGGTCTTCCTGGCCAAGTTTATCATGCCCTTACGGTTCCGGTACGAAGG GCCCTCTGATTCAGTGCAAGGCATCGAGGGCTTAATGCGTTTTGGATTAT CACCAATCAATTTCTCGCCCCAGCGCCGAGACGCAGCACGCTTTTCAATG GACGGGCCGGGCGCGAGGGACGGACTCTTCAACCTCACCGACCTCCAAAG TACGCCACTTTTTCTAAGCACCCCGCACTACATGGGCTATCCGCAGCTCA ACTCGTTGGAGTGTTTGAGTGTCATTGCCTACGATCCAGTCGGCGAGCAA GACGCTGCCATGGGGAGTCATCTGGATATAGATCCCTACACGGGAAGGAC AATGTCAGCAGCGGTTCGTATGCAGCTGTCAACCTCAACAGCAGATGGGA ACAAGGTCTATGATGTGTTCCATGACAAAGCTTACGCTGCTGAGGTTATT CCACTACTGTGGATGACGCAGCGGGCAGAAGTGGGGCCAGCGGACGCGGT ATTATTCAAGAAGCTGTGTTCTGCGCCGCTAACCGCGGTCGAGCAATTCC AAAGATATACCTTGCTGGTAGGGATTGCGTTGACGGTGTTGGGTCTGGTA ATGGTAGTGGCCGGCTGTTTCTTTGCTCGCAGAAAGCGAAGTGAAGAGAA GACTGCAGATTCTCGGGGATCCACCATTAATATTCTTTGAGTTTGACACC ACACCAACGCAACGAAAGGCCATAAAATGAAGAATACAAGAGAGTCAATT TGTGAAATCGATTCCCATTTTAGTGCTGTGCAGGTGCTTGTGAAGATGTG TGTGGGCGCAAGTGTGAGCAGAATGCAAAAGAGGGACACTTTCCAGGGAA AAACACGAAAGAGATTTGCTTTAAGTTTGAGACGCGACCAAATAATTGAA TCGTAAATTATTTTTGTAATTATTGTAATTTGGTTGTGACAGGTAACGAC TATGCCAATACGAACAACTGGGAGGGAACAAAAGGCCGGAAGCTTCTCGC TAATTAGAAGCAGAAATAGGACACCTTGCATGATAAACCTAAAATACAGC TTCTACGTTTTTTTGACTCGAGAATTTGATCACGCAGCCAACGTCCATAT CTTCATTATGTTCTGGCGGTCGCCGCTTCCATAGAATCTTCTCTCTAAGT TCCTCTTCCTCCTCCACATCCTCATTTTCTTCCCCTCCTTCCATTAAGGG TAGGTTGGGAAAGTCTGTGACGCACAAGTCTACAAAAGCTGACTTGACTA CTTTATCCTCTTTCTCTCTCTCGCTCCTCGTTTTGCTTTCCACCTGCTTC TCCTCTTCCCCTTCATCTCCCTTCTCCTCCTCCTTTCTCTTCCACGATAC AAGGGTCTCTCTCATCCAGGGCAACAATGGGAGGATGCAATCACTCTCAT CCTTCTCCTTCTCGCTCGCCAATGTCCTCTCTTCGTAGCTCCTCAATCTA TTTCCAACCAACAACACATTCTGTAGGCAATCGGGTGACCAATTGGCCCA TAAGAGATTACTGTAAAGACGACGATGACAGCAGGGCATAAAAAAGACTG TCGGTGTGAGGGCCCGGCGTTTGCCGTGTTCGTTGTGAGGGAGGACGTGC CACCCGAGAAGGGTCAGGAGATGAGTGTCCAAGCCATCAAACAAGGGGTC GTAGACTTCGGCTGTTAAGAGAGGAGGAGAAGAGGGAGAGGGGGGGAGGG AGCTAAGGAGAATGTGAAGGCGGTCCTTAAGAAGACAGGCACATGCCAAC TGCCATAGTGGATGACTATCGGTGCTCTGTATGCTTCCCAAGCCGTAGCA GACTAGTGTGCGGACTTCTCGATCTTCCCTCCCTCCTGTTTTCCATCCCG ACCCAGATGTGAAGCGCGACAGGAGCGCATGTTCGAGGTTGGAATAGAAA GCAGTGGGTGATAGCATTCTTTTGGCAATCTCTACGGCAGCGAGCAGGCG GGTGGTCTCGCATTGTATATCAGCGGACGTGTACGTATCCCTATGCGTGG ATACAGGTGCCGGGATAGGGTGAGGGACGAGATGGGCAAGGGGAAGGGCC AGGGCTATGCTATGACGGGCGCCCACACACAAGCAGATATCAAGATCCAT ATGTCCACAGTACAACACGGTGACGTACCTTAGGCCTCCCCCATGAGGTT GGTGGAAGGAGGCAGGGAATGCCGTGGTGCTGCTGCTGCGGCTGCTGGGC TTTCTTTTTGCGCTTTTGCCCTTCTTGCTGGACGTGACAAATACCCATTC TGTCTCTTTTTCTTTCTTTTTGTTGTCATCGTCCTTGTCATCATCGGCGC CGGTCTCTGCCATCTTGCCCTGT
back to top

Coding sequence (CDS) from alignment at chr11:1113675..1119497+

>NO11G03460.1 ID=NO11G03460.1|Name=NO11G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=3309bp|location=Sequence derived from alignment at chr11:1113675..1119497+ (Nannochloropsis oceanica)
ATGGAAGAATGCTCAGAGCAGCGACCACCCCTGGAGACTGAATCTCCGTC
TCTCCAGCAAGATGAGCTCCTTTCTATGGCCCGTATCCTACCTTCAAACG
AAGAAGATCACGAGGACGGCTACTCAGAGACGGCAACAGCTGACGACATC
GACCTACCATCCCCTTCTTCCCCACGACCTGACCGCCGCCACTCCAGCCC
CCTGTCAGAACCCAGCAATTATAGTGCACACAGACACAGTCATACCACTT
GTCGGGATGTTGAGGCTGGTCTTGACTCCAGCAATCTGTCCAGGTCCTCT
TCTTCTTCTATTGAACCTTCGCCTGCCTCAACGGCGACTTCGGCATCGAC
CGCCGCGGCCGCTCTTGCAGGTACCGCTGCCCTGCGTGCTCTTCCTGCAG
GTCATAAAACCTCTAATTCTTCTGCACTCGCTCTGAATTCCTCTCCTTCT
TGTGCTGTCAAGGCCGGGAGGTATGTGCGTAATTTTGGCCTTCTGTTCCT
CGGCATTGGTTTGTTGGCCTTGGGGGCAGCGATCTTTAGCCACACCTACC
TTCCCGCCTGGCGCAATAAAAAGCTTCTAACCTCCTTAGTAGTAGACTCT
ACCAAACACCCTGGTTATGCGACGTGGGCTAATCCCTCGTCCAAGGAAAA
AGGGGGAGGGGACTCGCCTATGTACCAGACATTTTATTTCTTCCACCTTG
TCAACCCGGCGAATTTTTTGCAGGGCAGGAGGCCCGTGTACCTGGAGAAG
GGGCCCTATACCTTCCAGCAGAAGAAAAAAAAAGTGGAGGTGGAGTTCTC
GGAGGATGGGACGCTGGTGTCGTACGTGACGCTGGTGCAGAACGAGTATA
AGCCGGACAAATCTGGCGCCGATGTCCTCCTGTCTGACGAAGTGAGCATG
ATAAATCTCGCCTACTCCACGGCTGTCGCCACTTTTGGGAGCGAATCAAA
CCTCCTTCGCGTCGGCACCCGCATGGCGTTGGGGGAGGTCGAACGGGCAT
TGGAAGCGGAATTTTTGCCCACCTTGAAAGAGAATGCGCTGGTCACCGGG
GCAGTCAAGGCGCTGGCATTGACGGAGACGAACCTCAACAAGCTGAACTA
TCCCCAGGACGGAGTCGCGATTCGATGGGGAGGTGGCTGCGTGGAGACTG
GGATGTTCACAAAACAGTGCGGATTTGAGAAGGCTCCCTTTCTAAAGTCT
ATGATGGGGAAGGAAGATCCGCGGGATGTCGAGTTCTTCCAGATGTGTCT
GGATCCTGGGCTGGGGTCGGAGCCCGGACAGTTCATCCCACTGGCAACTG
TACATGAACTCTGGAACACGACCAATCCTCTCTCTATTTTCAGTGTGAAA
AGGGTCAACACAAGCACGCGTGTTGGCGTCTCACACTGGTTGAATGGCGA
TGCGGACATGCGAGACACTCTCATGGCTCACTTCAGCCTCAACACCTACC
AGTACACCAAGCTCACAAACTACGTCCGCACGATTTACGAATCCCCGCTA
TTGGAATACTCTGTGGTGAAGAATTTCCTCCAAAGTTTACCTCCTGGGGA
GATCGAATCCGCGAACGAGGTCGAAGACTGGTCGAGTCTCGTGTGGCGAC
AGTGGGCGGTCGGGGACGTGATCCAGACCTTCAATGGCGCGAGTTTGCCC
GAATCGGTCATTCCTGAGACACCTCCCGAACTCTCTTTCTATTTGGCTTC
AGTTGGGAAACCCGTCTGGACGACCGGAGGAGTGATCGTGGGTGAATCTG
AGGCCCCTGCACCCATCAGTAAGGCACGATGGTCAATACGCCAAACTAAA
TGTCTGTTTGACACGGTTCTGCGAAAGATGGATGCGGAAATTTTTGCCGA
GGACCTCTTAGGCTTGCCCACGCCTCCAAACAAAACGCCCCGCAAGCCTT
TCGTGAACTCGCGAGCAACAAAGACCGCCACAGCGGAAGCGAGCAAGGCA
GCACTTCAAGAGTGCCTTATGTCAGAAGACGCGTGGGACGTCATGCTTGG
TTACCTCGACTACCTTGGCCAGAAACTGGTGGCGCCCTATATACAACGCC
ACGTCCTGGATGCACAAGGCGGGCTGGTCGTGACTCGTTCAGTCCAATCC
TGGTTGGAGGGACGCGTAGAACCCATCTTGGCTTTAGCCCTCCAGGCTGG
CGATCCTCGAATTATGTTTGGCTTCATGGGGCAGGATAAGCAGATGGAGG
CACCTGGAAAGTGCACGCGGCTGGCAGACGTCGAAAATGCGTACTCTGCA
TGTGCCCCGGTGTTGTCGGCTGCAGACTCTAAGACGGTGAGCTACTACAA
AAAGGTCGCAAATACCTATCACACTGGGAAAGACCACCCGGAAAGGCTAG
GTGCGCTGGCAAAATACAAGGGCGATGACGTGGCGTGGGGCATCTGGCCT
CGGGATTCCGTGGAGATCTTGGGCGGGGCGGAGAAAGAGGAAGGAAGTGT
ATTACAGTACGGCTTCTCAGAGGGGGAGCAATTCCCGCCTCTGAACCGTA
TCATGCAGGCAACGACGGAGCATGTGGGAGAGGGACTCTTGGCCGGACTG
GAGCAAACGCTCAGCACACTGGCCTTCGAGGATGGTACGGCGGAAGAGTT
GGAGAAGGACACGGACCTGATGGTCTTCCTGGCCAAGTTTATCATGCCCT
TACGGTTCCGGTACGAAGGGCCCTCTGATTCAGTGCAAGGCATCGAGGGC
TTAATGCGTTTTGGATTATCACCAATCAATTTCTCGCCCCAGCGCCGAGA
CGCAGCACGCTTTTCAATGGACGGGCCGGGCGCGAGGGACGGACTCTTCA
ACCTCACCGACCTCCAAAGTACGCCACTTTTTCTAAGCACCCCGCACTAC
ATGGGCTATCCGCAGCTCAACTCGTTGGAGTGTTTGAGTGTCATTGCCTA
CGATCCAGTCGGCGAGCAAGACGCTGCCATGGGGAGTCATCTGGATATAG
ATCCCTACACGGGAAGGACAATGTCAGCAGCGGTTCGTATGCAGCTGTCA
ACCTCAACAGCAGATGGGAACAAGGTCTATGATGTGTTCCATGACAAAGC
TTACGCTGCTGAGGTTATTCCACTACTGTGGATGACGCAGCGGGCAGAAG
TGGGGCCAGCGGACGCGGTATTATTCAAGAAGCTGTGTTCTGCGCCGCTA
ACCGCGGTCGAGCAATTCCAAAGATATACCTTGCTGGTAGGGATTGCGTT
GACGGTGTTGGGTCTGGTAATGGTAGTGGCCGGCTGTTTCTTTGCTCGCA
GAAAGCGAAGTGAAGAGAAGACTGCAGATTCTCGGGGATCCACCATTAAT
ATTCTTTGA
back to top
Synonyms
Publications