NO11G03160.1, NO11G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03160.1
Unique NameNO11G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1731
Alignment locationchr11:990767..993556 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:990767..993556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G03160.1 vs.
Match: CBJ28056.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.1 bits (357), Expect = 3.100e-30
Identity = 72/195 (36.92%), Postives = 114/195 (58.46%), Query Frame = 0 
Query:  134 NGKEVTFKASKSAECDVMEGIRSLKDYMALPPSEYSVLDADAIVRLGEDSFRCQIGSLSFFGYQMTPILYVKVNVDPAQGKSTLNIYKLELTGSRIAEIANGTFQVKARNVVSYR----NTAISTSKILQSTVSVQVDAQVPRGNMIPLHVLESGGSLVIKGVLKVMVPRFVKILAKDYENWSSGDDSRRAVAQD 325
            NG  V + ASK +  +V EG R LKDY+ALPP+EYS+LD   I RL E++FR    ++S  G ++ P+L+V+V V P    + + + ++EL GS     A G+F V +  VVS        A +    L+++ ++ ++  VP  N +P+ VL   G+ V++ V+ + +P+F   L +DY  W+ GDD R AVA +
Sbjct:  125 NGDRVVWSASKRSNVEVGEGTRKLKDYLALPPTEYSLLDPKMITRLSEETFRMDGATMSIVGTKIKPVLFVRVEVQPENSMANIMVERVELDGSEAVRSAGGSFNVSSSTVVSCAKKEGTPADANIMELRASSNIAIELLVPNENFVPVGVLRRAGNFVMQRVVDIGLPQFTYFLRRDYARWAEGDDDRAAVAAE 319
The following BLAST results are available for this feature:
BLAST of NO11G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28056.13.100e-3036.92conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03160NO11G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03160.1NO11G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03160.1.cds1NO11G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds2NO11G03160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds3NO11G03160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds4NO11G03160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds5NO11G03160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds6NO11G03160.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds7NO11G03160.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03160.1.cds8NO11G03160.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03160.1 ID=NO11G03160.1|Name=NO11G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp
AAAAGGTTGGCACGCAAGGTTGTTCATTGTTGTTTTTCCTTCAGTCGTCA
GCAATATCCTACCCGGGAGAAGTTGCAGCACACCTTTCCGGAGCCTCCGT
TTGTAATGATGCCCAAGCTCACCATAAAGCAACTCAAATTCTAGCAAGGT
ATACTCTCTCTGTGTTCTTCACTTATAAAGCCATGCAGCGCAATCATTGT
CACTCTCCCCACACACACACATCCAGGCGCAAAAGAAGCAGGCCGATCCC
ACTCTTCCTTCTTCCACCTCCCCTCTGTCCTGCCACCGCGACAACAGAGA
AGCCCACTCCATAGAAAGCCCATGGAAGGTACAAGAAGAGATTCGGCCAC
CCCTACTACCACAAGCTGTACGAACACTAGCAGTAGCAGCCGTACGCATG
GCCGGAAACAGCGCTTGATTTATCTGGAGTGCTGTTATCTGGTCGTGTTT
CTGTTGTCCTTGCCCGGCCCGGTCCGAGCCTTTTTCTTTTCCTCCTCACC
CCCCTCCTCCACTCCACTGCGACAACTCCAACCATCATGGCCAGCACCCA
CACAGCGCACAATGAGTAGACATACGGCTCCCTCTATGCTGCTCCGCCGG
TGGATGGGCTCCACCCCAACGCCGGATTCCACCACCCCCCCGCGTTCCTC
CTCCTCCTCCCTCTCTTCCAGCACCCCTCCCACCACGGATCCCTCGAATC
TGAAGTATGGCGGGACGCACAACGGCAAGGAAGTCACGTTCAAGGCCTCC
AAGAGCGCTGAGTGCGACGTGATGGAAGGCATTCGGTCCCTCAAGGACTA
CATGGCGTTGCCCCCCTCGGAGTACTCAGTGCTTGATGCTGATGCCATCG
TCAGGTTGGGAGAGGACTCATTTCGCTGCCAAATCGGCTCCCTGTCCTTC
TTCGGCTATCAGATGACGCCCATCCTCTACGTCAAGGTCAATGTGGACCC
CGCCCAGGGCAAGAGCACCCTCAACATCTACAAGCTCGAGCTCACGGGCT
CGCGGATCGCTGAGATTGCAAATGGCACATTTCAAGTGAAGGCACGCAAC
GTGGTGAGCTACCGCAACACGGCCATCTCCACCTCCAAGATCTTGCAGTC
CACCGTCTCCGTGCAGGTGGATGCCCAGGTCCCAAGGGGTAACATGATTC
CTCTCCACGTCTTGGAGTCGGGGGGCTCTCTGGTCATCAAGGGCGTGCTT
AAGGTGATGGTGCCTCGGTTTGTCAAGATCTTGGCCAAAGATTATGAAAA
TTGGAGCTCAGGGGACGACTCGAGACGCGCCGTCGCCCAGGATATGCCGG
AAAAGCTGACTGCTCCCAAAATATAATGTAATTTGACCCAAGCAGATGCT
TTGGATGTAAGATGACAAGCAGATGCTATGATGATCCAGAAGAGAAGCAG
ATGATAATTATCATCATTGTCACGATGATTCAGAAGAGAAGCAGGTCATA
ATAATCAACATGATTGTTATTATGTGTTTATGCCGATTATGAAGATCCTC
ACACGGTATCCATGTCAAGCAGATCACTATCATGATCACCACCATCTCGA
TGGCCACGAACAGAAAGATAAGTACAGCAAGAGGAAGAAGAATGTGATGT
CCATGAAGAAGACTTAGACGACGGCTATGAAGGTAAATCAAATAAATACA
GTGGAAACCCTGCACACAAGGGCAACAGCCGCACCACGATCTGACGCATG
CGACTGGAGAACGTGAGAGAGAGAGAGAGAG
back to top

protein sequence of NO11G03160.1

>NO11G03160.1-protein ID=NO11G03160.1-protein|Name=NO11G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MEGTRRDSATPTTTSCTNTSSSSRTHGRKQRLIYLECCYLVVFLLSLPGP
VRAFFFSSSPPSSTPLRQLQPSWPAPTQRTMSRHTAPSMLLRRWMGSTPT
PDSTTPPRSSSSSLSSSTPPTTDPSNLKYGGTHNGKEVTFKASKSAECDV
MEGIRSLKDYMALPPSEYSVLDADAIVRLGEDSFRCQIGSLSFFGYQMTP
ILYVKVNVDPAQGKSTLNIYKLELTGSRIAEIANGTFQVKARNVVSYRNT
AISTSKILQSTVSVQVDAQVPRGNMIPLHVLESGGSLVIKGVLKVMVPRF
VKILAKDYENWSSGDDSRRAVAQDMPEKLTAPKI*
back to top

mRNA from alignment at chr11:990767..993556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03160.1 ID=NO11G03160.1|Name=NO11G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp|location=Sequence derived from alignment at chr11:990767..993556- (Nannochloropsis oceanica)
AAAAGGTTGGCACGCAAGGTTGTTCATTGTTGTTTTTCCTTCAGTCGTCA
GCAATATCCTACCCGGGAGAAGTTGCAGCACACCTTTCCGGAGCCTCCGT
TTGTAATGATGCCCAAGCTCACCATAAAGCAACTCAAATTCTAGCAAGGT
ATACTCTCTCTGTGTTCTTCACTTATAAAGCCATGCAGCGCAATCATTGT
CACTCTCCCCACACACACACATCCAGGCGCAAAAGAAGCAGGCCGATCCC
ACTCTTCCTTCTTCCACCTCCCCTCTGTCCTGCCACCGCGACAACAGAGA
AGCCCACTCCATAGAAAGCCCATGGAAGGTACAAGAAGAGATTCGGCCAC
CCCTACTACCACAAGCTGTACGAACACTAGCAGTAGCAGCCGTACGCATG
GCCGGAAACAGCGCTTGATTTATCTGGAGTGCTGTTATCTGGTCGTGTTT
CTGTTGTCCTTGCCCGGCCCGGTCCGAGCCTTTTTCTTTTCCTCCTCACC
CCCCTCCTCCACTCCACTGCGACAACTCCAACCATCATGGCCAGCACCCA
CACAGCGCACAATGAGTAGACATACGGTAAGCTTGAGTAGTCAGTCAGTC
CCTAGAGCCACGCGCCTCCCTCGTCTCTCACCCCTTCCGGGCCGCTCCGT
TGCACCATCTCACAGGCTCCCTCTATGCTGCTCCGCCGGTGGATGGGCTC
CACCCCAACGCCGGATTCCACCACCCCCCCGCGTTCCTCCTCCTCCTCCC
TCTCTTCCAGCACCCCTCCCACCACGGATCCCTCGAATCTGAAGTATGGC
GGGACGCACAACGGCAAGGAAGTCACGTTCAAGGCCTCCAAGAGCGCTGA
GTGCGACGTGGTATGAGAGGGAGGAAAGGATGGAGGGAGGGAGGGAGGGA
GGGCAAGACTGGGACTCACAAAATTCTATTGGTGGATCTTTGGGGGGATG
TCGATAGTCCTGTCTGGTGAAGGCTTTGTATGCTTGACGGGAGTGGAGGG
ATTTAGGCGTCTGTACACGGATCTTATGTCCCTCCCTCCCTCCCTCCCTC
CCTCCTTCCCCCCCTTCCTTTCTCTCTCCTTGTAGATGGAAGGCATTCGG
TCCCTCAAGGACTACATGGCGTTGCCCCCCTCGGAGTACTCAGTGCTTGA
TGCTGATGCCATCGTCAGGTTGGGAGAGGACTCATTTCGGTAGGTGGACG
AGGAGGGGAGGGAAGGAGGGAGGAAGGGAGGGAAGGAGGGAGGGAGGGAG
GGAGGGAGTTTCAATGGCATACACTCATACTTGATTCTCCTCGCTCCCTC
CCCCCTCAGCTGCCAAATCGGCTCCCTGTCCTTCTTCGGCTATCAGATGA
CGCCCATCCTCTACGTCAAGGTCAATGTGGACCCCGCCCAGGGCAAGAGC
ACCCTCAACATCTACAAGCTCGAGCTCACGGGCTCGCGGATCGCTGAGAT
TGCAAATGGCACATTTCAAGGTAGGCACTTCCCTCCGTCCCTCCCTCCTT
CCCTCCCTCCTTCCCTCCCTCCCTTTCCTCTTGTTCTTGCCCTTTGACCT
CCCTTCCTTTCTCACCTACCTACCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTTCCCTCTCCACAGTGAAGGCACGCAACGTGGTGA
GCTACCGCAACACGGCCATCTCCACCTCCAAGATCTTGCAGTCCACCGTC
TCCGTGCAGGTGGATGCCCAGGTACGCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTACTCCCTCCCTCCCTTACTCCCTCCCTCT
CCAGGTCCCAAGGGGTAACATGATTCCTCTCCACGTCTTGGAGTCGGGGG
GCTCTCTGGTCATCAAGGGCGTGCTTAAGGTGATGGTGCCTCGGTTTGTC
AAGGTAGGGAGGGAGGGAGGGAGGGACGGACGGACGGACCGACGGACCGA
CGGAAGGATGATGCGAAATCAATGCAAGACTAACAGGTCCATTGCTCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGTGTGTCAGATCTTGGC
CAAAGATTATGAAAATTGGAGCTCAGGGGACGACTCGAGACGCGCCGTCG
CCCAGGCACGGCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGAAGGAGG
GAGGGAATGCAACGTTAAAAGATGCTGACGATAGAAACCATATTCTCTGT
CCTTCCTCCCTGCCCTTCTCCCTCCCTTCCTCTCTCCCTCCCTTCAATGG
AGCCGCTGGACCCCGGGACATTCTCATTTGACATTCGTCCCTCGCTCCTC
TTCCTCCCTCTCTCCCTCCCTCTCCCCTCCTCCCTTCTCTGTAATGCAGG
ATATGCCGGAAAAGCTGACTGCTCCCAAAATATAATGTAATTTGACCCAA
GCAGATGCTTTGGATGTAAGATGACAAGCAGATGCTATGATGATCCAGAA
GAGAAGCAGATGATAATTATCATCATTGTCACGATGATTCAGAAGAGAAG
CAGGTCATAATAATCAACATGATTGTTATTATGTGTTTATGCCGATTATG
AAGATCCTCACACGGTATCCATGTCAAGCAGATCACTATCATGATCACCA
CCATCTCGATGGCCACGAACAGAAAGATAAGTACAGCAAGAGGAAGAAGA
ATGTGATGTCCATGAAGAAGACTTAGACGACGGCTATGAAGGTAAATCAA
ATAAATACAGTGGAAACCCTGCACACAAGGGCAACAGCCGCACCACGATC
TGACGCATGCGACTGGAGAACGTGAGAGAGAGAGAGAGAG
back to top

Coding sequence (CDS) from alignment at chr11:990767..993556-

>NO11G03160.1 ID=NO11G03160.1|Name=NO11G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr11:990767..993556- (Nannochloropsis oceanica)
ATGGAAGGTACAAGAAGAGATTCGGCCACCCCTACTACCACAAGCTGTAC
GAACACTAGCAGTAGCAGCCGTACGCATGGCCGGAAACAGCGCTTGATTT
ATCTGGAGTGCTGTTATCTGGTCGTGTTTCTGTTGTCCTTGCCCGGCCCG
GTCCGAGCCTTTTTCTTTTCCTCCTCACCCCCCTCCTCCACTCCACTGCG
ACAACTCCAACCATCATGGCCAGCACCCACACAGCGCACAATGAGTAGAC
ATACGGCTCCCTCTATGCTGCTCCGCCGGTGGATGGGCTCCACCCCAACG
CCGGATTCCACCACCCCCCCGCGTTCCTCCTCCTCCTCCCTCTCTTCCAG
CACCCCTCCCACCACGGATCCCTCGAATCTGAAGTATGGCGGGACGCACA
ACGGCAAGGAAGTCACGTTCAAGGCCTCCAAGAGCGCTGAGTGCGACGTG
ATGGAAGGCATTCGGTCCCTCAAGGACTACATGGCGTTGCCCCCCTCGGA
GTACTCAGTGCTTGATGCTGATGCCATCGTCAGGTTGGGAGAGGACTCAT
TTCGCTGCCAAATCGGCTCCCTGTCCTTCTTCGGCTATCAGATGACGCCC
ATCCTCTACGTCAAGGTCAATGTGGACCCCGCCCAGGGCAAGAGCACCCT
CAACATCTACAAGCTCGAGCTCACGGGCTCGCGGATCGCTGAGATTGCAA
ATGGCACATTTCAAGTGAAGGCACGCAACGTGGTGAGCTACCGCAACACG
GCCATCTCCACCTCCAAGATCTTGCAGTCCACCGTCTCCGTGCAGGTGGA
TGCCCAGGTCCCAAGGGGTAACATGATTCCTCTCCACGTCTTGGAGTCGG
GGGGCTCTCTGGTCATCAAGGGCGTGCTTAAGGTGATGGTGCCTCGGTTT
GTCAAGATCTTGGCCAAAGATTATGAAAATTGGAGCTCAGGGGACGACTC
GAGACGCGCCGTCGCCCAGGATATGCCGGAAAAGCTGACTGCTCCCAAAA
TATAA
back to top
Synonyms
Publications