NO11G02990.1, NO11G02990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G02990.1
Unique Name	NO11G02990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2788
Alignment location	chr11:938032..941348 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:938032..941348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO11G02990.1 vs.
Match: EWM24917.1 (fad nad -binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 485.0 bits (1247), Expect = 3.000e-133
Identity = 235/317 (74.13%), Postives = 273/317 (86.12%), Query Frame = 0

Query:   15 EDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESRDGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGRRMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLERRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHVEGFKSQITPWGVQFRLLFSKPGAGALAPYLKPENHYVMSGIYVSIIEGNVWVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPFLTEEDLSMYFKRRSFRGAMVKVNRLNLGEWGVLLG 332
            E+  +II+GAGPVGLLAAILLVQE  A QV+IYE+RDGL TDL ESYP+GVNPRG+RALDRARPDMAIALR R  M+DAW+IYAG RM+AEVPSGLVVGTTRS INE+LYEEV KHF+ +I+I W HRLK+LD+LER L+FDVK+P  D +LA+TYEEVTV+GGGAR+LACDGVWS VR FAE HVEGF S ++PW VQFRLLFSKPGAG L P L+P  HYVM GIY+SIIE +VWV+GLGI + LP QTR+LL AT +TP R+AALRAYVTKKAPLAAPFLT EDL +YF R++F GAMVKV++LN+GEW VLLG
Sbjct:   12 ENNRYIIIGAGPVGLLAAILLVQEKHAAQVSIYEARDGLTTDLHESYPIGVNPRGSRALDRARPDMAIALRMRSSMIDAWRIYAGSRMVAEVPSGLVVGTTRSTINEILYEEVCKHFQEQIKILWSHRLKTLDILERSLIFDVKRPRADEELAQTYEEVTVQGGGARVLACDGVWSVVRGFAEKHVEGFTSNVSPWRVQFRLLFSKPGAGKLVPELEPRYHYVMGGIYLSIIEEDVWVLGLGIGEHLPRQTRELLTATVATPERIAALRAYVTKKAPLAAPFLTAEDLELYFTRKTFGGAMVKVSQLNIGEWAVLLG 328

The following BLAST results are available for this feature:

BLAST of NO11G02990.1 vs.

BLAST of NO11G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24917.1	3.000e-133	74.13	fad nad -binding domain-containing protein [Nannoc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G02990	NO11G02990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G02990.1	NO11G02990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G02990.1.cds1	NO11G02990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G02990.1.cds2	NO11G02990.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G02990.1.cds3	NO11G02990.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:938032..941348+
coding sequence from alignment at chr11:938032..941348+

mRNA sequence

>NO11G02990.1 ID=NO11G02990.1|Name=NO11G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2788bp
TATTTGCGGGTGTATCCTGTGTCTTGTGTGCATGAGGATGTCGCCACGAT
TTGTGAGCTCAAGAGCCGGTTTGGACACCACCAGCCTGCAAGCCCCTTCT
CACAAATCAGCAGTAAGCTTCCTGCAAGTCCATTCATTGAGCTTCTCACG
CTCTTCATCCCGTCTCCGCTCGTCCATACCCGGCACACACATCCATAGAG
GCCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGACAA
CAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGGGCG
GGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGACGC
CCTTCAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGATCTGC
AAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTTGGAT
CGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCATGGT
TGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTACCAT
CGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTTGTAT
GAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGGGGCA
TCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGACGTAA
AACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGTGACG
GTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGAGCGA
GGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAAATCA
CTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGCGGGA
GCCTTGGCGCCGTACCTGAAGCCTGAGAATCACTATGTAATGAGCGGGAT
CTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGGATAG
ATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGAATCG
ACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGGCACC
CTTGGCGGCCCCATTCTTGACGGAGGAGGATTTGAGTATGTATTTTAAGA
GGAGGAGCTTTCGCGGAGCGATGGTGAAGGTTAACCGACTTAATCTTGGG
GAGTGGGGCGTGTTGCTGGGTGACGCCGCACACTGCGTCATTCCTCCCAT
CGGCGAAGGATTTAATTCCGGGGCGGAGGATGTGGAAGTCCTCATGGATG
CCATGCACCACGACCTCGACAACCCCTTCAGCAAATACAACGAGTGGCGT
CTCCCCGATTTGCACGCCCTGCATGAACTGGCTTTCGATGTCAATCAATC
GAATTTTGGAAATTTAGGCCCGGAAAAGATAAGTCGGTTGATAACTTCGA
TGATGGTAGGGCTTGCCAAGAGCTGCGGGGTGTTCAGGACAACGTGGGAA
GACATGAGTTTTGGCGCGGATGCCTTCCCGCCCAAATCGTACCTGGAAAT
CGGGAGTGTGTGGCGGTGGCAGCGCTTGTTTCTTCTACCGCTGGCAAGGA
TAATTGTGTGGCCTATGTATTTATTGGTTTGGGTGGTGATGCGGCCGGTA
CAATTGATGTGGACGGTGATGACGGGCCCTAATCGAGGAGGAGGAGGAGG
AGGAGGAGAAGGAGGAGGAGGAGAGAGAGGAAGAGGAGGAGACGGGACTC
AGAAGTCGAAGCGGGCGTGACGATAACGACAAAGCACAGCGGAATTTAAC
GGCAAGAATTTATACAAGTAACAATGGCGCTGCAAAAATTGAAATATTAT
CGACAACACGACCCATGCACGCGCAAGACTTAAAGAAACTATATATCAAG
CTGCACTTATCCACTCATTTGAACAAATACACGGGACTATCTTCAGTTTT
CTTCTTCTTTGCGTCCCATTGGCATATGCCACGGGCTGCTTGTCGGTCCA
GGGCTTGCTGTACACTAGCTATGTCCTCGTCCTTCTCTTTGAATCATTAA
ACTCTACCTCCCCTCTTACACCCTCCACTTACAAAATATCTTCCCAGTAA
TCTTCCGCTTCCTCGACCCCTCCTCCTTCCTCTTCCTCCGCTGCCACCTT
CTGCTTCCCTCCGCCCCCTCCTTTACCCTCCCCATCCCCCTCCACCTCTA
CCCTCCTAATCTGCATCCTGAACAACTCTGCTATCTGCGCCGCAGTCGTT
GCGTCCTCCACCCCCTTATCCTCCCTCACCTTCAAAAAGCGCGGAAACCT
CAAACTCATCCCCTTCTGCTTGTCTACCAACCCCACCCCTGCCTTATGCA
CCGGGCTTATGGTCAGTTCCGCCCCCCGTATCTCCCAAACCTGACAGGGG
TCGAACCATATCGGGCACGTCTCCCCTGTCCTGACGTAACTCTTAGGCGC
GTCAATGATCCTCCCCTCACTCTGATAAAATTTGGTGGTGTCGGCGTACA
TGGCATCGGTTAATCCCGACATGCACCGACAGAGGGACTGGAGCTCTTCG
GTCTCGGGGTTGTAGCAGGCGAGGAGGATGGGAGAGAACCAACCGGCCTT
GCGGCCGTTGCCGTACCTGTAGGAAAGGGAGGGAGGGAGGGAGGGAAAAA
GAGGATCGGACGACAAGACAAAGAAGAAAGAAGGGCATGCGCCTAGACTG
GAAGAAAAGCGCAGGGACGGGGGAAGAGAGGGATGGAAGGAGAAATGGAG
GGAGGGATGGAGGGAGGGATGGAGGGAGGGATGGAGGG

protein sequence of NO11G02990.1

>NO11G02990.1-protein ID=NO11G02990.1-protein|Name=NO11G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MTTSGETTGQKLHPEDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESR
DGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGR
RMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLE
RRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHV
EGFKSQITPWGVQFRLLFSKPGAGALAPYLKPENHYVMSGIYVSIIEGNV
WVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPFLTEE
DLSMYFKRRSFRGAMVKVNRLNLGEWGVLLGDAAHCVIPPIGEGFNSGAE
DVEVLMDAMHHDLDNPFSKYNEWRLPDLHALHELAFDVNQSNFGNLGPEK
ISRLITSMMVGLAKSCGVFRTTWEDMSFGADAFPPKSYLEIGSVWRWQRL
FLLPLARIIVWPMYLLVWVVMRPVQLMWTVMTGPNRGGGGGGGEGGGGER
GRGGDGTQKSKRA*

mRNA from alignment at chr11:938032..941348+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G02990.1 ID=NO11G02990.1|Name=NO11G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=3317bp|location=Sequence derived from alignment at chr11:938032..941348+ (Nannochloropsis oceanica)
TATTTGCGGGTGTATCCTGTGTCTTGTGTGCATGAGGATGTCGCCACGAT
TTGTGAGCTCAAGAGCCGGTTTGGACACCACCAGCCTGCAAGCCCCTTCT
CACAAATCAGCAGTAAGCTTCCTGCAAGTCCATTCATTGAGCTTCTCACG
CTCTTCATCCCGTCTCCGCTCGTCCATACCCGGCACACACATCCATAGAG
GCCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGACAA
CAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGGGCG
GGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGACGC
CCTTCAGGTAAAACACACACGCCTCAAGGATGGCATCACCGTACACTCTT
GTCCAGAAGATAGAGGTGGTATGTCGTTGTTGATGTTAAGCCTTACTCGC
CGAAGAGAGTTTGCATCAACATGGCCCGCCCTCCCGCCCTCCTTGCACCC
TCCTTCAAACCCTTCCTTACGCACATGTATTCCCGCATCACCACATCACA
CACCAAAATAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGAT
CTGCAAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTT
GGATCGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCA
TGGTTGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTA
CCATCGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTT
GTATGAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGG
GGCATCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGAC
GTAAAACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGT
GACGGTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGA
GCGAGGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAA
ATCACTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGC
GGGAGCCTTGGCGCCGTACCTGAAGCCTGAGAATCACTATGTAATGAGCG
GGATCTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGG
ATAGATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGA
ATCGACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGG
CACCCTTGGCGGCCCCATTCTTGACGGAGGAGGATTTGAGTATGTATTTT
AAGAGGAGGAGCTTTCGCGGAGCGATGGTGAAGGTTAACCGACTTAATCT
TGGGGAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGCGTGGGAGAAC
AAGAAGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCCATG
TTTTTTGCGTCGAGTACATGAGTAAATGTGACGTGTTTAAAAAAGGTCAG
ATATTATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCCTCT
GTCCCCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATTTAG
GGCCGAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGAACCACTCCA
TCCCCCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATACGCA
GACGCCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGG
GGCGGAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACA
ACCCCTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTG
CATGAACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCC
GGAAAAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGA
GCTGCGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCGGAT
GCCTTCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCA
GCGCTTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATT
TATTGGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATG
ACGGGCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGG
AGAGAGAGGAAGAGGAGGAGACGGGACTCAGAAGTCGAAGCGGGCGTGAC
GATAACGACAAAGCACAGCGGAATTTAACGGCAAGAATTTATACAAGTAA
CAATGGCGCTGCAAAAATTGAAATATTATCGACAACACGACCCATGCACG
CGCAAGACTTAAAGAAACTATATATCAAGCTGCACTTATCCACTCATTTG
AACAAATACACGGGACTATCTTCAGTTTTCTTCTTCTTTGCGTCCCATTG
GCATATGCCACGGGCTGCTTGTCGGTCCAGGGCTTGCTGTACACTAGCTA
TGTCCTCGTCCTTCTCTTTGAATCATTAAACTCTACCTCCCCTCTTACAC
CCTCCACTTACAAAATATCTTCCCAGTAATCTTCCGCTTCCTCGACCCCT
CCTCCTTCCTCTTCCTCCGCTGCCACCTTCTGCTTCCCTCCGCCCCCTCC
TTTACCCTCCCCATCCCCCTCCACCTCTACCCTCCTAATCTGCATCCTGA
ACAACTCTGCTATCTGCGCCGCAGTCGTTGCGTCCTCCACCCCCTTATCC
TCCCTCACCTTCAAAAAGCGCGGAAACCTCAAACTCATCCCCTTCTGCTT
GTCTACCAACCCCACCCCTGCCTTATGCACCGGGCTTATGGTCAGTTCCG
CCCCCCGTATCTCCCAAACCTGACAGGGGTCGAACCATATCGGGCACGTC
TCCCCTGTCCTGACGTAACTCTTAGGCGCGTCAATGATCCTCCCCTCACT
CTGATAAAATTTGGTGGTGTCGGCGTACATGGCATCGGTTAATCCCGACA
TGCACCGACAGAGGGACTGGAGCTCTTCGGTCTCGGGGTTGTAGCAGGCG
AGGAGGATGGGAGAGAACCAACCGGCCTTGCGGCCGTTGCCGTACCTGTA
GGAAAGGGAGGGAGGGAGGGAGGGAAAAAGAGGATCGGACGACAAGACAA
AGAAGAAAGAAGGGCATGCGCCTAGACTGGAAGAAAAGCGCAGGGACGGG
GGAAGAGAGGGATGGAAGGAGAAATGGAGGGAGGGATGGAGGGAGGGATG
GAGGGAGGGATGGAGGG

Coding sequence (CDS) from alignment at chr11:938032..941348+

>NO11G02990.1 ID=NO11G02990.1|Name=NO11G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr11:938032..941348+ (Nannochloropsis oceanica)
ATGACGACGTCGGGCGAGACAACAGGCCAGAAGTTGCATCCCGAAGACCG
GCACTTCATTATTGTGGGGGCGGGCCCCGTGGGTCTCCTGGCCGCAATCC
TTCTGGTCCAAGAGATCGACGCCCTTCAGGTGACAATATACGAATCTCGT
GATGGCCTCATTACGGATCTGCAAGAGAGCTATCCCGTTGGCGTCAACCC
TCGAGGGGCCAGGGCGTTGGATCGGGCTAGGCCCGACATGGCCATTGCCC
TGCGCAAACGGGGCGTCATGGTTGATGCCTGGAAGATTTATGCTGGCAGA
CGGATGATCGCTGAGGTACCATCGGGCTTGGTGGTGGGTACTACGCGGAG
CATGATTAACGAGATGTTGTATGAGGAGGTCCGGAAGCATTTTCGAGGAC
GGATTGAAATCAAGTGGGGGCATCGCCTCAAGTCCTTGGACTTGCTCGAA
CGCCGCTTGGTCTTTGACGTAAAACAGCCAGCGACGGATCCTGACCTGGC
ACGGACATATGAGGAAGTGACGGTGGAGGGAGGGGGGGCAAGAATGTTGG
CATGCGATGGGGTCTGGAGCGAGGTGCGTGCGTTTGCAGAGAACCACGTG
GAGGGCTTCAAGAGTCAAATCACTCCCTGGGGGGTTCAATTTCGACTGCT
CTTTTCTAAACCTGGTGCGGGAGCCTTGGCGCCGTACCTGAAGCCTGAGA
ATCACTATGTAATGAGCGGGATCTACGTGTCAATCATTGAGGGCAACGTG
TGGGTCATGGGCTTAGGGATAGATGATGGTCTTCCTGCCCAAACCCGAGA
TCTCCTTCTCGCCACGGAATCGACGCCTACACGTGTGGCGGCCTTGCGGG
CATATGTCACGAAGAAGGCACCCTTGGCGGCCCCATTCTTGACGGAGGAG
GATTTGAGTATGTATTTTAAGAGGAGGAGCTTTCGCGGAGCGATGGTGAA
GGTTAACCGACTTAATCTTGGGGAGTGGGGCGTGTTGCTGGGTGACGCCG
CACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGGGGCGGAG
GATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACAACCCCTT
CAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTGCATGAAC
TGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCCGGAAAAG
ATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGAGCTGCGG
GGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCGGATGCCTTCC
CGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCAGCGCTTG
TTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATTTATTGGT
TTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATGACGGGCC
CTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAGAGA
GGAAGAGGAGGAGACGGGACTCAGAAGTCGAAGCGGGCGTGA

Synonyms

Publications