NO11G02820.1, NO11G02820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02820.1
Unique NameNO11G02820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length768
Alignment locationchr11:892105..893224 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:892105..893224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02820.1 vs.
Match: EWM24956.1 (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana])

HSP 1 Score: 300.8 bits (769), Expect = 4.000e-78
Identity = 134/178 (75.28%), Postives = 153/178 (85.96%), Query Frame = 0 
Query:   80 PHGPPAPPAAPSFDR--QLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPPSGTTVK 256
            P   P PP   S D    +++EIP+L TRAGPRD + W++RVKEEMQA+IALVRINKEKDNDWF INP NK CTRWEGKCWTYHQGV+FEF +HF+VP SYPATCPDL++P LDGKTAKIYRGGRICLD+HFQPLWARNVPKFG+AHALALGLGPWLSLE+PSLV A +LP +GTT +
Sbjct:   15 PASEPMPPVWASTDHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGTTAR 192
The following BLAST results are available for this feature:
BLAST of NO11G02820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24956.14.000e-7875.28Ubiquitin-conjugating enzyme/RWD [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02820NO11G02820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02820.1NO11G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02820.1.cds1NO11G02820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02820.1.cds2NO11G02820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02820.1 ID=NO11G02820.1|Name=NO11G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ATGGCCGGTTATGGTGACGTGGGAGTGTTGCGGGTGGATGGCCCGGGAAC
CAGACAGAGGGACACCCAACGCCAGCCAAGCGATACCACGGTGGTCTTAG
AATGCCTGTGCTATCAGTGCAGTGCGCAGTGTGGGGAGGATTGTGACAGG
TCCTTCGCCGGTGCGATGGACGCTGCTCCGATTCCACCATCGTCATCAGA
ATTATCATCCAAACCCCCAGCCCAAAGTAGCATCACGCCGCATGGCCCAC
CGGCTCCACCCGCAGCTCCCTCCTTCGACAGACAACTTGTCCAAGAAATC
CCCTTGTTGCGCACACGCGCTGGTCCCCGTGATAGGGATGCGTGGCTGGC
GAGGGTCAAGGAAGAAATGCAAGCTCTCATAGCCCTGGTCCGGATAAACA
AGGAGAAAGACAACGACTGGTTTACCATAAACCCCACCAATAAAACCTGC
ACGAGGTGGGAAGGCAAGTGCTGGACATACCACCAAGGCGTAAAATTTGA
GTTTGACTTGCATTTCGAGGTTCCTGTATCATACCCCGCAACGTGCCCCG
ACCTTGTCCTTCCTGAGCTCGATGGAAAGACGGCCAAGATATACCGCGGG
GGTCGTATTTGCTTGGACATCCATTTTCAGCCTTTATGGGCGCGGAATGT
GCCTAAGTTTGGCTTAGCTCATGCGTTAGCGTTGGGTTTGGGGCCGTGGT
TGTCTTTGGAAGTGCCTTCGTTGGTAGATGCACAGATTTTGCCACCGTCG
GGGACGACGGTCAAGTAG
back to top

protein sequence of NO11G02820.1

>NO11G02820.1-protein ID=NO11G02820.1-protein|Name=NO11G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAGYGDVGVLRVDGPGTRQRDTQRQPSDTTVVLECLCYQCSAQCGEDCDR
SFAGAMDAAPIPPSSSELSSKPPAQSSITPHGPPAPPAAPSFDRQLVQEI
PLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTC
TRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRG
GRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPPS
GTTVK*
back to top

mRNA from alignment at chr11:892105..893224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02820.1 ID=NO11G02820.1|Name=NO11G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp|location=Sequence derived from alignment at chr11:892105..893224+ (Nannochloropsis oceanica)
ATGGCCGGTTATGGTGACGTGGGAGTGTTGCGGGTGGATGGCCCGGGAAC
CAGACAGAGGGACACCCAACGCCAGCCAAGCGATACCACGGTGGTCTTAG
AATGCCTGTGCTATCAGTGCAGTGCGCAGTGTGGGGAGGATTGTGGTAGG
GTATGGTTGGTCGAGGCTTTAGGCAGAAGGAGAAGTGATTAGATGGGGAG
GAGGGAGGCTAAGGCATTGTTGCCTGGCCTCACATCCACGCCCAGGCCCC
AGTCACCCCCTGTCAAGGACACGATAATAAAGCGCACAGAATCGAGGAGA
TCTCTTTAGCCTTTTGCTTGCTGGATATAAATCGTAGGGAGAAAGAAGCG
AAATTGATCGGTTGGTATAGCAATAGCTTTCCTCGCGCCATCTTGCCCAC
ACGCCTTTCTTGTGCTCTTTGTTGACCAAAAACACTCCTGCAGGGACACA
AAACGCAATCATCCAGCCCCGCCACCCTCTTATCACATACCCTCAAGACA
GGTCCTTCGCCGGTGCGATGGACGCTGCTCCGATTCCACCATCGTCATCA
GAATTATCATCCAAACCCCCAGCCCAAAGTAGCATCACGCCGCATGGCCC
ACCGGCTCCACCCGCAGCTCCCTCCTTCGACAGACAACTTGTCCAAGAAA
TCCCCTTGTTGCGCACACGCGCTGGTCCCCGTGATAGGGATGCGTGGCTG
GCGAGGGTCAAGGAAGAAATGCAAGCTCTCATAGCCCTGGTCCGGATAAA
CAAGGAGAAAGACAACGACTGGTTTACCATAAACCCCACCAATAAAACCT
GCACGAGGTGGGAAGGCAAGTGCTGGACATACCACCAAGGCGTAAAATTT
GAGTTTGACTTGCATTTCGAGGTTCCTGTATCATACCCCGCAACGTGCCC
CGACCTTGTCCTTCCTGAGCTCGATGGAAAGACGGCCAAGATATACCGCG
GGGGTCGTATTTGCTTGGACATCCATTTTCAGCCTTTATGGGCGCGGAAT
GTGCCTAAGTTTGGCTTAGCTCATGCGTTAGCGTTGGGTTTGGGGCCGTG
GTTGTCTTTGGAAGTGCCTTCGTTGGTAGATGCACAGATTTTGCCACCGT
CGGGGACGACGGTCAAGTAG
back to top

Coding sequence (CDS) from alignment at chr11:892105..893224+

>NO11G02820.1 ID=NO11G02820.1|Name=NO11G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr11:892105..893224+ (Nannochloropsis oceanica)
ATGGCCGGTTATGGTGACGTGGGAGTGTTGCGGGTGGATGGCCCGGGAAC
CAGACAGAGGGACACCCAACGCCAGCCAAGCGATACCACGGTGGTCTTAG
AATGCCTGTGCTATCAGTGCAGTGCGCAGTGTGGGGAGGATTGTGACAGG
TCCTTCGCCGGTGCGATGGACGCTGCTCCGATTCCACCATCGTCATCAGA
ATTATCATCCAAACCCCCAGCCCAAAGTAGCATCACGCCGCATGGCCCAC
CGGCTCCACCCGCAGCTCCCTCCTTCGACAGACAACTTGTCCAAGAAATC
CCCTTGTTGCGCACACGCGCTGGTCCCCGTGATAGGGATGCGTGGCTGGC
GAGGGTCAAGGAAGAAATGCAAGCTCTCATAGCCCTGGTCCGGATAAACA
AGGAGAAAGACAACGACTGGTTTACCATAAACCCCACCAATAAAACCTGC
ACGAGGTGGGAAGGCAAGTGCTGGACATACCACCAAGGCGTAAAATTTGA
GTTTGACTTGCATTTCGAGGTTCCTGTATCATACCCCGCAACGTGCCCCG
ACCTTGTCCTTCCTGAGCTCGATGGAAAGACGGCCAAGATATACCGCGGG
GGTCGTATTTGCTTGGACATCCATTTTCAGCCTTTATGGGCGCGGAATGT
GCCTAAGTTTGGCTTAGCTCATGCGTTAGCGTTGGGTTTGGGGCCGTGGT
TGTCTTTGGAAGTGCCTTCGTTGGTAGATGCACAGATTTTGCCACCGTCG
GGGACGACGGTCAAGTAG
back to top
Synonyms
Publications