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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:822775..825001 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02650.1 vs.
Match: XP_005855801.1 (ubiquitin carboxyl-terminal hydrolase 10, partial [Nannochloropsis gaditana CCMP526]; EKU20559.1 ubiquitin carboxyl-terminal hydrolase 10, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.7 bits (761), Expect = 9.200e-77 Identity = 167/278 (60.07%), Postives = 195/278 (70.14%), Query Frame = 0
Query: 425 EEEGNDDGWSEVGEKGRVAKLRVSGVCRGRKDGKNGESPGKGGRGGEDVSAVSALFYGRERSDLRRATSRSISATTTRLSCLQLDLPSGGGGREGGRELKLEEVIEHSFREELVENSDGSTLRKKLFIDALPRVLILHLKRFIFDVQRGAGVKLHQGVDYPSRLTFPPHLLTATLRATVAAEGGR-EG-GPTFQLFAVGLHHGRTLNGGHYTVFCKGGKGWEGGGSRGEGGGGGGGGGGGGGGGGEWYAYDDERVESVQEGQVRGWTKEVYLLFYQRV 701
EEE + GW EVGEKGRVAKL VSGV R K G DVSA+S LFYGRERSD+RRATSRSISAT TR +CLQLDLP GGG G +E+ LEEVIEHSFREE++E+SDG+ LRKKL +DALP VLILHLKRFIFD+ +G GVKLH V YPS L P +L+ +LR T EGG+ EG GP ++LFAVGLH+GR+LNGGHYTVFCK GGGG EW YDDERV+ VQE +V+ +T++VYLLFY+RV
Sbjct: 1 EEEEGEGGWQEVGEKGRVAKLSVSGVKRTEK-------------GTTDVSAISRLFYGRERSDIRRATSRSISATMTRFNCLQLDLPPLGGG--GKKEVALEEVIEHSFREEVIESSDGTFLRKKLCLDALPPVLILHLKRFIFDLHQGVGVKLHHRVHYPSCLRLPSQMLSVSLRTTAGIEGGKGEGKGPAYELFAVGLHYGRSLNGGHYTVFCK-----------------------EGGGGKEWVGYDDERVDRVQEWEVKSYTEQVYLLFYERV 240
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02650.1 ID=NO11G02650.1|Name=NO11G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp
ATGCCAAGCGCCGGCGGGAGAGAGAGGCAGACGCGGAGCTCAAGCTCCTG
CACCGACGACGATGGAGAGGCAGAGGAGACTGTCCTGGTCGCGGCTTTTG
GGGCCGCGTCGTTGGGTGAAATGAAGGAGCAGCCTCAGGACAAGGATAGG
GAGGTGCCTCGAGTCGATGGGTGGGTGGGTAAGAAGAGGAAGAAAAAGAA
GACAAAAAAGAAGGAGAAAAAGGGCACTGCAGGCCGGACGAGGGAGGGGG
AGGATGAGACCCAGGAGGCGGCCGAGGAGGGGCGTAGCACCACTGCCAAA
GCCATTACTTTTACTGAAAAGTCTATCAAATCACCATCAGACGCATTTAG
AATAAACCAATCACCCCAGGAGAGCGATTCGGCTGCCAAATCACTATCCG
GCCCCGTCGCCGCGGTGAAGGAGCAGAGACCAGAAGATGAAGGGGTATCT
CATGAAGCGTCGCCACATGCATCACCTGACCCAAAGAAACCCTCGATTTC
GTCCACTGTCGTGGCTATCACGGGCAGCGATGGCACGCCTACTGCCGCTG
ATGTGGATGGTGCCGTTGCGGCCGCCGCCGCAGCAGTCCATGCCAACTCC
ACCAAACCCAGCACCATGTCACTCACCAAAGACTACGTCTTGCACCTGCT
CTCTGGCGAAATCCTTCCCTCCTCTCCTCCCCTCGCACCTTCCCCCAGCC
ATCTTCCCCTTCCTCCTCGCCGCCAACGGGGGATGGTCAACACAGGCAAC
GCCTGCTTCCGGAACCTCGTCCTCCAAGCCCTCCTCTCCTGCGAGCCCTT
TTACCGCCTCCTCCTCACCCTCCGCCCTTTTGTCGTCAATAAACCCCCTC
CCTCCCTCCCCCAAGACTTGGAGTCCCTTCTCCCCACCTGGCTGGGCTTC
GCCAAGCTCGCCGTTGCCCTTGAAGACCCCTCACTCGTCACCCCCTCCTC
CTCTTCGTCCTCCGACCTGCCCTCTCGGACGATGTACCGCAAGAACGAGC
TAACCCCCCCCAAATCAACGGGAATATACGCAAGAAGAACCGCAGCAGAA
AGCAGCAACCACCACCCTCCTCCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAACA
ACAGCGGCAGCAGCACTCCACGAGGAAGTGAGAGGTGCGGTGAGGAAGAG
AGAGGAGGAGAGGGAGGGGGGGGAGGAGGCACGGGGGGGGGAGGGGGAAA
GGCCTGGGAGAGGGGAGCGCAGGAGGAAGAGGGGAACGATGATGGATGGT
CGGAGGTAGGGGAGAAGGGGAGAGTGGCCAAGTTAAGAGTGAGCGGAGTG
TGTCGGGGAAGGAAGGATGGGAAGAATGGAGAAAGTCCAGGGAAGGGAGG
GAGGGGAGGGGAGGATGTGAGTGCGGTGTCGGCGTTGTTTTATGGGAGGG
AAAGGTCCGATTTGAGACGGGCGACGAGTCGGAGCATTAGTGCCACCACG
ACAAGGTTGAGTTGCCTGCAGCTGGACCTGCCCTCAGGAGGGGGAGGGAG
GGAGGGAGGGAGGGAGTTGAAGTTGGAAGAGGTCATTGAGCATTCGTTTC
GGGAGGAATTGGTGGAGAACAGCGATGGGTCGACTCTGAGGAAAAAGCTG
TTTATTGATGCCCTCCCTCGTGTCCTCATTCTCCACCTGAAACGATTTAT
TTTCGACGTGCAGCGAGGTGCGGGGGTAAAGCTGCACCAGGGGGTGGATT
ATCCTTCTCGGCTGACCTTCCCTCCCCATTTACTTACAGCCACGTTGAGG
GCGACGGTGGCGGCGGAGGGAGGGAGGGAGGGAGGGCCGACATTCCAGCT
GTTCGCTGTGGGGTTGCATCACGGGCGTACATTAAATGGGGGGCATTACA
CGGTCTTTTGTAAAGGGGGGAAAGGGTGGGAGGGAGGTGGTTCTCGAGGA
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GGAGTGGTACGCATATGATGATGAGAGGGTGGAGAGCGTACAAGAGGGGC
AGGTGAGGGGATGGACGAAGGAAGTGTACCTCCTGTTTTACCAGAGGGTG
TGA back to topprotein sequence of NO11G02650.1 >NO11G02650.1-protein ID=NO11G02650.1-protein|Name=NO11G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=701bp
MPSAGGRERQTRSSSSCTDDDGEAEETVLVAAFGAASLGEMKEQPQDKDR
EVPRVDGWVGKKRKKKKTKKKEKKGTAGRTREGEDETQEAAEEGRSTTAK
AITFTEKSIKSPSDAFRINQSPQESDSAAKSLSGPVAAVKEQRPEDEGVS
HEASPHASPDPKKPSISSTVVAITGSDGTPTAADVDGAVAAAAAAVHANS
TKPSTMSLTKDYVLHLLSGEILPSSPPLAPSPSHLPLPPRRQRGMVNTGN
ACFRNLVLQALLSCEPFYRLLLTLRPFVVNKPPPSLPQDLESLLPTWLGF
AKLAVALEDPSLVTPSSSSSSDLPSRTMYRKNELTPPKSTGIYARRTAAE
SSNHHPPPSSSSSSSSSSSSSSSSSSNNSSSNNNSGSSTPRGSERCGEEE
RGGEGGGGGGTGGGGGKAWERGAQEEEGNDDGWSEVGEKGRVAKLRVSGV
CRGRKDGKNGESPGKGGRGGEDVSAVSALFYGRERSDLRRATSRSISATT
TRLSCLQLDLPSGGGGREGGRELKLEEVIEHSFREELVENSDGSTLRKKL
FIDALPRVLILHLKRFIFDVQRGAGVKLHQGVDYPSRLTFPPHLLTATLR
ATVAAEGGREGGPTFQLFAVGLHHGRTLNGGHYTVFCKGGKGWEGGGSRG
EGGGGGGGGGGGGGGGGEWYAYDDERVESVQEGQVRGWTKEVYLLFYQRV
* back to topmRNA from alignment at chr11:822775..825001- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02650.1 ID=NO11G02650.1|Name=NO11G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp|location=Sequence derived from alignment at chr11:822775..825001- (Nannochloropsis oceanica)
ATGCCAAGCGCCGGCGGGAGAGAGAGGCAGACGCGGAGCTCAAGCTCCTG
CACCGACGACGATGGAGAGGCAGAGGAGACTGTCCTGGTCGCGGCTTTTG
GGGCCGCGTCGTTGGGTGAAATGAAGGAGCAGCCTCAGGACAAGGATAGG
GAGGTGCCTCGAGTCGATGGGTGGGTGGGTAAGAAGAGGAAGAAAAAGAA
GACAAAAAAGAAGGAGAAAAAGGGCACTGCAGGCCGGACGAGGGAGGGGG
AGGATGAGACCCAGGAGGCGGCCGAGGAGGGGCGTAGCACCACTGCCAAA
GCCATTACTTTTACTGAAAAGTCTATCAAATCACCATCAGACGCATTTAG
AATAAACCAATCACCCCAGGAGAGCGATTCGGCTGCCAAATCACTATCCG
GCCCCGTCGCCGCGGTGAAGGAGCAGAGACCAGAAGATGAAGGGGTATCT
CATGAAGCGTCGCCACATGCATCACCTGACCCAAAGAAACCCTCGATTTC
GTCCACTGTCGTGGCTATCACGGGCAGCGATGGCACGCCTACTGCCGCTG
ATGTGGATGGTGCCGTTGCGGCCGCCGCCGCAGCAGTCCATGCCAACTCC
ACCAAACCCAGCACCATGTCACTCACCAAAGACTACGTCTTGCACCTGCT
CTCTGGCGAAATCCTTCCCTCCTCTCCTCCCCTCGCACCTTCCCCCAGCC
ATCTTCCCCTTCCTCCTCGCCGCCAACGGGGGATGGTCAACACAGGCAAC
GCCTGCTTCCGGAACCTCGTCCTCCAAGCCCTCCTCTCCTGCGAGCCCTT
TTACCGCCTCCTCCTCACCCTCCGCCCTTTTGTCGTCAATAAACCCCCTC
CCTCCCTCCCCCAAGACTTGGAGTCCCTTCTCCCCACCTGGCTGGGCTTC
GCCAAGCTCGCCGTTGCCCTTGAAGACCCCTCACTCGTCACCCCCTCCTC
CTCTTCGTCCTCCGACCTGCCCTCTCGGACGATGTACCGCAAGAACGAGC
TAACCCCCCCCAAATCAACGGGAATATACGCAAGAAGAACCGCAGCAGAA
AGCAGCAACCACCACCCTCCTCCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAACA
ACAGCGGCAGCAGCGTGAGTTTTGGATTGCGCCAGTATTACCCGATGATT
ACCTCGGGTTGGCTTTTGGGGCGTTTCGGTCGTCGGACGCGGGGGAACAG
GAGGATGCACAAGAGTTTATGGCCTTCATGTTGGATAGACTCCACGAGGA
AGTGAGAGGTGCGGTGAGGAAGAGAGAGGAGGAGAGGGAGGGGGGGGAGG
AGGCACGGGGGGGGGAGGGGGAAAGGCCTGGGAGAGGGGAGCGCAGGAGG
AAGAGGGGAACGATGATGGATGGTCGGAGGTAGGGGAGAAGGGGAGAGTG
GCCAAGTTAAGAGTGAGCGGAGTGTGTCGGGGAAGGAAGGATGGGAAGAA
TGGAGAAAGTCCAGGGAAGGGAGGGAGGGGAGGGGAGGATGTGAGTGCGG
TGTCGGCGTTGTTTTATGGGAGGGAAAGGTCCGATTTGAGACGGGCGACG
AGTCGGAGCATTAGTGCCACCACGACAAGGTTGAGTTGCCTGCAGCTGGA
CCTGCCCTCAGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGTTGAAGTTGG
AAGAGGTCATTGAGCATTCGTTTCGGGAGGAATTGGTGGAGAACAGCGAT
GGGTCGACTCTGAGGAAAAAGCTGTTTATTGATGCCCTCCCTCGTGTCCT
CATTCTCCACCTGAAACGATTTATTTTCGACGTGCAGCGAGGTGCGGGGG
TAAAGCTGCACCAGGGGGTGGATTATCCTTCTCGGCTGACCTTCCCTCCC
CATTTACTTACAGCCACGTTGAGGGCGACGGTGGCGGCGGAGGGAGGGAG
GGAGGGAGGGCCGACATTCCAGCTGTTCGCTGTGGGGTTGCATCACGGGC
GTACATTAAATGGGGGGCATTACACGGTCTTTTGTAAAGGGGGGAAAGGG
TGGGAGGGAGGTGGTTCTCGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGAGTGGTACGCATATGATGATGAGA
GGGTGGAGAGCGTACAAGAGGGGCAGGTGAGGGGATGGACGAAGGAAGTG
TACCTCCTGTTTTACCAGAGGGTGTGA back to topCoding sequence (CDS) from alignment at chr11:822775..825001- >NO11G02650.1 ID=NO11G02650.1|Name=NO11G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=2103bp|location=Sequence derived from alignment at chr11:822775..825001- (Nannochloropsis oceanica)
ATGCCAAGCGCCGGCGGGAGAGAGAGGCAGACGCGGAGCTCAAGCTCCTG
CACCGACGACGATGGAGAGGCAGAGGAGACTGTCCTGGTCGCGGCTTTTG
GGGCCGCGTCGTTGGGTGAAATGAAGGAGCAGCCTCAGGACAAGGATAGG
GAGGTGCCTCGAGTCGATGGGTGGGTGGGTAAGAAGAGGAAGAAAAAGAA
GACAAAAAAGAAGGAGAAAAAGGGCACTGCAGGCCGGACGAGGGAGGGGG
AGGATGAGACCCAGGAGGCGGCCGAGGAGGGGCGTAGCACCACTGCCAAA
GCCATTACTTTTACTGAAAAGTCTATCAAATCACCATCAGACGCATTTAG
AATAAACCAATCACCCCAGGAGAGCGATTCGGCTGCCAAATCACTATCCG
GCCCCGTCGCCGCGGTGAAGGAGCAGAGACCAGAAGATGAAGGGGTATCT
CATGAAGCGTCGCCACATGCATCACCTGACCCAAAGAAACCCTCGATTTC
GTCCACTGTCGTGGCTATCACGGGCAGCGATGGCACGCCTACTGCCGCTG
ATGTGGATGGTGCCGTTGCGGCCGCCGCCGCAGCAGTCCATGCCAACTCC
ACCAAACCCAGCACCATGTCACTCACCAAAGACTACGTCTTGCACCTGCT
CTCTGGCGAAATCCTTCCCTCCTCTCCTCCCCTCGCACCTTCCCCCAGCC
ATCTTCCCCTTCCTCCTCGCCGCCAACGGGGGATGGTCAACACAGGCAAC
GCCTGCTTCCGGAACCTCGTCCTCCAAGCCCTCCTCTCCTGCGAGCCCTT
TTACCGCCTCCTCCTCACCCTCCGCCCTTTTGTCGTCAATAAACCCCCTC
CCTCCCTCCCCCAAGACTTGGAGTCCCTTCTCCCCACCTGGCTGGGCTTC
GCCAAGCTCGCCGTTGCCCTTGAAGACCCCTCACTCGTCACCCCCTCCTC
CTCTTCGTCCTCCGACCTGCCCTCTCGGACGATGTACCGCAAGAACGAGC
TAACCCCCCCCAAATCAACGGGAATATACGCAAGAAGAACCGCAGCAGAA
AGCAGCAACCACCACCCTCCTCCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAACA
ACAGCGGCAGCAGCACTCCACGAGGAAGTGAGAGGTGCGGTGAGGAAGAG
AGAGGAGGAGAGGGAGGGGGGGGAGGAGGCACGGGGGGGGGAGGGGGAAA
GGCCTGGGAGAGGGGAGCGCAGGAGGAAGAGGGGAACGATGATGGATGGT
CGGAGGTAGGGGAGAAGGGGAGAGTGGCCAAGTTAAGAGTGAGCGGAGTG
TGTCGGGGAAGGAAGGATGGGAAGAATGGAGAAAGTCCAGGGAAGGGAGG
GAGGGGAGGGGAGGATGTGAGTGCGGTGTCGGCGTTGTTTTATGGGAGGG
AAAGGTCCGATTTGAGACGGGCGACGAGTCGGAGCATTAGTGCCACCACG
ACAAGGTTGAGTTGCCTGCAGCTGGACCTGCCCTCAGGAGGGGGAGGGAG
GGAGGGAGGGAGGGAGTTGAAGTTGGAAGAGGTCATTGAGCATTCGTTTC
GGGAGGAATTGGTGGAGAACAGCGATGGGTCGACTCTGAGGAAAAAGCTG
TTTATTGATGCCCTCCCTCGTGTCCTCATTCTCCACCTGAAACGATTTAT
TTTCGACGTGCAGCGAGGTGCGGGGGTAAAGCTGCACCAGGGGGTGGATT
ATCCTTCTCGGCTGACCTTCCCTCCCCATTTACTTACAGCCACGTTGAGG
GCGACGGTGGCGGCGGAGGGAGGGAGGGAGGGAGGGCCGACATTCCAGCT
GTTCGCTGTGGGGTTGCATCACGGGCGTACATTAAATGGGGGGCATTACA
CGGTCTTTTGTAAAGGGGGGAAAGGGTGGGAGGGAGGTGGTTCTCGAGGA
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GGAGTGGTACGCATATGATGATGAGAGGGTGGAGAGCGTACAAGAGGGGC
AGGTGAGGGGATGGACGAAGGAAGTGTACCTCCTGTTTTACCAGAGGGTG
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