NO11G02050.1, NO11G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02050.1
Unique NameNO11G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1620
Alignment locationchr11:653343..654962 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:653343..654962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02050.1 vs.
Match: EWM24999.1 (heparanase-like protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 798.5 bits (2061), Expect = 1.300e-227
Identity = 376/538 (69.89%), Postives = 444/538 (82.53%), Query Frame = 0 
Query:    1 MALRGALDGLLALAPGPAFKAPTAQVINLSLGANIIARTGEDYICATTDWWPPNKCDYGICAWSNTPYGPNPSIPNLDLSQPLFKAAFDTLSPFIWRLGGSLQDDITYEEPGNPAVVCPPITDDPTAKWGFTGGCLNRSRWSEIANFAKDHEAKLVFGLNGLKGRVHVEGKQWEGMWDQSNAKSLMTYTKEAGLPIYAWELGNELGGFNGIQAQLSARDVGQDFVTLRGMVTELWGEGEEAPLVVGPDTDLDITWFTEFFEAAQGSLDGVAIHMYALGAGVDPTLAGKIINPSHMAKATRTAEDLTQLMQGLVAKNVGGVVKMPQLWMGEDGGAYNSGQNGTTNRFTAGFWSLNELGIFAKNGFTVYCRQTLLGGNYGLLDKDTLLPNPDFFNYLLFKRLMGREVLRVESSSPEVTVYAHCTRKGGKEDELQGLEPGAVTVLIINFMAQHDAQIGVLKLEGE-WRDLLPEPRLEYTLTSGMPGKLNGTFSLLNGSPLQVSSEGVYPAMDPLVVKKGEDLVLPKQSYGFYVFPKAGVRA 538
            MALRG L  L  L    AF+   A+ + L +G +++ARTGE+YICATTDWWPP KCDYG CAWS+ P G NPSIPNLDL++PLFKAAFD LSPFIWRLGGSLQDDITYEEPGNP V CPPIT+DP A+WGF GGCL R+RW+EIA+FA+DH AKLVFGLNGL GR HV+ ++W G WD +NAKSLM+YTKE+GLPI+AWELGNELGG+NGIQAQL A++VG+DFV LR +VTELWG GE +PL+VGPDT LDI WFT+F +AA GSLD VAIHMYALGAGVDPTLA KI++P+HMA A++TA+DL  L+  L A +     ++PQLWMGEDGGAYNSG+NGTTNRFTAGFWSLNELGIFA+ GF+VYCRQTLLGGNYGLLDKDTL PNPDFFNYLLFKRLMG EVL V+SS  EVT YAHCTR+G     +   E GAVTVLI+NFM+  DA+IG + +  +  +DLL  PRLEYTLTSG PG+LN TFS LNG PL+VS  G++PAM PL++++ + L +PKQSYGFYVFP+A V+A
Sbjct:    1 MALRGVLGSLPVLDHSVAFEVLPAKNVGLVMGMDVVARTGEEYICATTDWWPPTKCDYGTCAWSDAPSGSNPSIPNLDLNKPLFKAAFDALSPFIWRLGGSLQDDITYEEPGNPEVTCPPITNDPDAQWGFIGGCLTRARWTEIASFARDHNAKLVFGLNGLHGRRHVKDREWTGSWDPTNAKSLMSYTKESGLPIHAWELGNELGGWNGIQAQLGAQEVGRDFVALRSIVTELWGSGEGSPLIVGPDTGLDIPWFTDFLKAANGSLDAVAIHMYALGAGVDPTLAEKIMDPAHMATASKTAQDLATLITNLAATS---GEEVPQLWMGEDGGAYNSGRNGTTNRFTAGFWSLNELGIFARAGFSVYCRQTLLGGNYGLLDKDTLQPNPDFFNYLLFKRLMGPEVLDVQSSRREVTAYAHCTRRGIAGFPI--FEAGAVTVLILNFMSDFDAEIGTMTVTRDAQKDLLTGPRLEYTLTSGTPGELNSTFSNLNGQPLRVSETGIFPAMLPLIIQREQTLTVPKQSYGFYVFPEARVQA 533
The following BLAST results are available for this feature:
BLAST of NO11G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24999.11.300e-22769.89heparanase-like protein 3 [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02050NO11G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02050.1NO11G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02050.1.cds1NO11G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02050.1 ID=NO11G02050.1|Name=NO11G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
ATGGCCTTGCGCGGCGCCTTGGACGGCCTGCTGGCCCTGGCCCCCGGGCC
TGCTTTCAAAGCCCCGACCGCCCAGGTAATCAACCTGAGCCTTGGAGCCA
ATATCATTGCCAGGACAGGTGAGGATTACATCTGCGCAACGACGGACTGG
TGGCCCCCCAACAAGTGCGACTATGGGATCTGTGCCTGGAGCAACACCCC
TTACGGGCCCAACCCCTCCATACCCAATCTCGACTTGAGCCAACCCTTGT
TCAAGGCAGCTTTCGATACCCTGTCGCCGTTTATTTGGCGCTTGGGCGGG
TCCTTGCAGGATGACATTACGTACGAAGAGCCAGGGAACCCTGCAGTAGT
CTGCCCTCCCATAACTGACGACCCTACCGCCAAATGGGGCTTTACGGGCG
GCTGCCTCAATCGGAGCCGCTGGTCCGAAATCGCAAATTTTGCCAAAGAC
CACGAGGCGAAATTGGTGTTTGGGTTGAATGGGTTGAAGGGCCGTGTGCA
TGTCGAGGGGAAACAGTGGGAGGGGATGTGGGACCAAAGCAATGCCAAGT
CGCTGATGACTTACACGAAAGAAGCAGGACTCCCCATCTATGCTTGGGAG
CTCGGAAATGAACTTGGGGGTTTCAATGGCATCCAGGCTCAACTATCTGC
GCGAGATGTAGGACAGGATTTTGTGACGTTAAGAGGAATGGTCACGGAAC
TCTGGGGGGAAGGGGAGGAGGCGCCTTTGGTGGTGGGTCCTGATACGGAC
TTGGACATCACATGGTTTACTGAGTTTTTTGAGGCAGCACAGGGGAGTTT
GGATGGGGTGGCAATACACATGTATGCTTTGGGAGCTGGTGTTGACCCTA
CCTTGGCTGGAAAAATCATAAACCCCTCACATATGGCCAAAGCCACCCGG
ACTGCCGAAGACCTCACGCAGCTCATGCAAGGGTTGGTTGCGAAAAATGT
TGGGGGTGTGGTAAAGATGCCTCAGTTGTGGATGGGTGAGGATGGGGGAG
CGTATAATTCAGGGCAAAACGGGACGACCAATCGATTTACGGCCGGATTT
TGGTCCTTGAATGAGCTGGGGATTTTCGCGAAAAATGGTTTCACCGTTTA
TTGTCGCCAGACGCTTTTGGGAGGGAATTACGGATTGCTTGACAAGGATA
CTTTGCTGCCGAATCCGGACTTTTTCAACTATCTGTTGTTTAAACGGCTG
ATGGGGCGGGAGGTGCTGAGAGTAGAGAGCAGTAGTCCAGAGGTGACGGT
GTATGCGCATTGTACGAGGAAGGGAGGGAAGGAGGACGAGCTGCAAGGGT
TGGAGCCTGGGGCGGTTACTGTTTTGATAATTAATTTCATGGCTCAACAT
GACGCGCAGATTGGCGTCTTGAAGCTGGAGGGAGAGTGGAGGGATCTGTT
GCCAGAACCCCGCTTGGAATATACCTTGACCTCAGGCATGCCGGGAAAGC
TCAACGGAACCTTTTCCCTTTTGAATGGCAGCCCGCTTCAGGTGTCGTCG
GAGGGAGTATATCCCGCCATGGACCCCTTGGTGGTGAAGAAGGGCGAGGA
CTTGGTGCTGCCGAAGCAGAGCTATGGATTTTATGTGTTCCCCAAGGCGG
GTGTGCGGGCTTGCATGTAA
back to top

protein sequence of NO11G02050.1

>NO11G02050.1-protein ID=NO11G02050.1-protein|Name=NO11G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MALRGALDGLLALAPGPAFKAPTAQVINLSLGANIIARTGEDYICATTDW
WPPNKCDYGICAWSNTPYGPNPSIPNLDLSQPLFKAAFDTLSPFIWRLGG
SLQDDITYEEPGNPAVVCPPITDDPTAKWGFTGGCLNRSRWSEIANFAKD
HEAKLVFGLNGLKGRVHVEGKQWEGMWDQSNAKSLMTYTKEAGLPIYAWE
LGNELGGFNGIQAQLSARDVGQDFVTLRGMVTELWGEGEEAPLVVGPDTD
LDITWFTEFFEAAQGSLDGVAIHMYALGAGVDPTLAGKIINPSHMAKATR
TAEDLTQLMQGLVAKNVGGVVKMPQLWMGEDGGAYNSGQNGTTNRFTAGF
WSLNELGIFAKNGFTVYCRQTLLGGNYGLLDKDTLLPNPDFFNYLLFKRL
MGREVLRVESSSPEVTVYAHCTRKGGKEDELQGLEPGAVTVLIINFMAQH
DAQIGVLKLEGEWRDLLPEPRLEYTLTSGMPGKLNGTFSLLNGSPLQVSS
EGVYPAMDPLVVKKGEDLVLPKQSYGFYVFPKAGVRACM*
back to top

mRNA from alignment at chr11:653343..654962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02050.1 ID=NO11G02050.1|Name=NO11G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp|location=Sequence derived from alignment at chr11:653343..654962+ (Nannochloropsis oceanica)
ATGGCCTTGCGCGGCGCCTTGGACGGCCTGCTGGCCCTGGCCCCCGGGCC
TGCTTTCAAAGCCCCGACCGCCCAGGTAATCAACCTGAGCCTTGGAGCCA
ATATCATTGCCAGGACAGGTGAGGATTACATCTGCGCAACGACGGACTGG
TGGCCCCCCAACAAGTGCGACTATGGGATCTGTGCCTGGAGCAACACCCC
TTACGGGCCCAACCCCTCCATACCCAATCTCGACTTGAGCCAACCCTTGT
TCAAGGCAGCTTTCGATACCCTGTCGCCGTTTATTTGGCGCTTGGGCGGG
TCCTTGCAGGATGACATTACGTACGAAGAGCCAGGGAACCCTGCAGTAGT
CTGCCCTCCCATAACTGACGACCCTACCGCCAAATGGGGCTTTACGGGCG
GCTGCCTCAATCGGAGCCGCTGGTCCGAAATCGCAAATTTTGCCAAAGAC
CACGAGGCGAAATTGGTGTTTGGGTTGAATGGGTTGAAGGGCCGTGTGCA
TGTCGAGGGGAAACAGTGGGAGGGGATGTGGGACCAAAGCAATGCCAAGT
CGCTGATGACTTACACGAAAGAAGCAGGACTCCCCATCTATGCTTGGGAG
CTCGGAAATGAACTTGGGGGTTTCAATGGCATCCAGGCTCAACTATCTGC
GCGAGATGTAGGACAGGATTTTGTGACGTTAAGAGGAATGGTCACGGAAC
TCTGGGGGGAAGGGGAGGAGGCGCCTTTGGTGGTGGGTCCTGATACGGAC
TTGGACATCACATGGTTTACTGAGTTTTTTGAGGCAGCACAGGGGAGTTT
GGATGGGGTGGCAATACACATGTATGCTTTGGGAGCTGGTGTTGACCCTA
CCTTGGCTGGAAAAATCATAAACCCCTCACATATGGCCAAAGCCACCCGG
ACTGCCGAAGACCTCACGCAGCTCATGCAAGGGTTGGTTGCGAAAAATGT
TGGGGGTGTGGTAAAGATGCCTCAGTTGTGGATGGGTGAGGATGGGGGAG
CGTATAATTCAGGGCAAAACGGGACGACCAATCGATTTACGGCCGGATTT
TGGTCCTTGAATGAGCTGGGGATTTTCGCGAAAAATGGTTTCACCGTTTA
TTGTCGCCAGACGCTTTTGGGAGGGAATTACGGATTGCTTGACAAGGATA
CTTTGCTGCCGAATCCGGACTTTTTCAACTATCTGTTGTTTAAACGGCTG
ATGGGGCGGGAGGTGCTGAGAGTAGAGAGCAGTAGTCCAGAGGTGACGGT
GTATGCGCATTGTACGAGGAAGGGAGGGAAGGAGGACGAGCTGCAAGGGT
TGGAGCCTGGGGCGGTTACTGTTTTGATAATTAATTTCATGGCTCAACAT
GACGCGCAGATTGGCGTCTTGAAGCTGGAGGGAGAGTGGAGGGATCTGTT
GCCAGAACCCCGCTTGGAATATACCTTGACCTCAGGCATGCCGGGAAAGC
TCAACGGAACCTTTTCCCTTTTGAATGGCAGCCCGCTTCAGGTGTCGTCG
GAGGGAGTATATCCCGCCATGGACCCCTTGGTGGTGAAGAAGGGCGAGGA
CTTGGTGCTGCCGAAGCAGAGCTATGGATTTTATGTGTTCCCCAAGGCGG
GTGTGCGGGCTTGCATGTAA
back to top

Coding sequence (CDS) from alignment at chr11:653343..654962+

>NO11G02050.1 ID=NO11G02050.1|Name=NO11G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr11:653343..654962+ (Nannochloropsis oceanica)
ATGGCCTTGCGCGGCGCCTTGGACGGCCTGCTGGCCCTGGCCCCCGGGCC
TGCTTTCAAAGCCCCGACCGCCCAGGTAATCAACCTGAGCCTTGGAGCCA
ATATCATTGCCAGGACAGGTGAGGATTACATCTGCGCAACGACGGACTGG
TGGCCCCCCAACAAGTGCGACTATGGGATCTGTGCCTGGAGCAACACCCC
TTACGGGCCCAACCCCTCCATACCCAATCTCGACTTGAGCCAACCCTTGT
TCAAGGCAGCTTTCGATACCCTGTCGCCGTTTATTTGGCGCTTGGGCGGG
TCCTTGCAGGATGACATTACGTACGAAGAGCCAGGGAACCCTGCAGTAGT
CTGCCCTCCCATAACTGACGACCCTACCGCCAAATGGGGCTTTACGGGCG
GCTGCCTCAATCGGAGCCGCTGGTCCGAAATCGCAAATTTTGCCAAAGAC
CACGAGGCGAAATTGGTGTTTGGGTTGAATGGGTTGAAGGGCCGTGTGCA
TGTCGAGGGGAAACAGTGGGAGGGGATGTGGGACCAAAGCAATGCCAAGT
CGCTGATGACTTACACGAAAGAAGCAGGACTCCCCATCTATGCTTGGGAG
CTCGGAAATGAACTTGGGGGTTTCAATGGCATCCAGGCTCAACTATCTGC
GCGAGATGTAGGACAGGATTTTGTGACGTTAAGAGGAATGGTCACGGAAC
TCTGGGGGGAAGGGGAGGAGGCGCCTTTGGTGGTGGGTCCTGATACGGAC
TTGGACATCACATGGTTTACTGAGTTTTTTGAGGCAGCACAGGGGAGTTT
GGATGGGGTGGCAATACACATGTATGCTTTGGGAGCTGGTGTTGACCCTA
CCTTGGCTGGAAAAATCATAAACCCCTCACATATGGCCAAAGCCACCCGG
ACTGCCGAAGACCTCACGCAGCTCATGCAAGGGTTGGTTGCGAAAAATGT
TGGGGGTGTGGTAAAGATGCCTCAGTTGTGGATGGGTGAGGATGGGGGAG
CGTATAATTCAGGGCAAAACGGGACGACCAATCGATTTACGGCCGGATTT
TGGTCCTTGAATGAGCTGGGGATTTTCGCGAAAAATGGTTTCACCGTTTA
TTGTCGCCAGACGCTTTTGGGAGGGAATTACGGATTGCTTGACAAGGATA
CTTTGCTGCCGAATCCGGACTTTTTCAACTATCTGTTGTTTAAACGGCTG
ATGGGGCGGGAGGTGCTGAGAGTAGAGAGCAGTAGTCCAGAGGTGACGGT
GTATGCGCATTGTACGAGGAAGGGAGGGAAGGAGGACGAGCTGCAAGGGT
TGGAGCCTGGGGCGGTTACTGTTTTGATAATTAATTTCATGGCTCAACAT
GACGCGCAGATTGGCGTCTTGAAGCTGGAGGGAGAGTGGAGGGATCTGTT
GCCAGAACCCCGCTTGGAATATACCTTGACCTCAGGCATGCCGGGAAAGC
TCAACGGAACCTTTTCCCTTTTGAATGGCAGCCCGCTTCAGGTGTCGTCG
GAGGGAGTATATCCCGCCATGGACCCCTTGGTGGTGAAGAAGGGCGAGGA
CTTGGTGCTGCCGAAGCAGAGCTATGGATTTTATGTGTTCCCCAAGGCGG
GTGTGCGGGCTTGCATGTAA
back to top
Synonyms
Publications