NO11G01750.1, NO11G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01750.1
Unique NameNO11G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr11:574632..576823 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:574632..576823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01750.1 vs.
Match: EWM25060.1 (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana])

HSP 1 Score: 529.3 bits (1362), Expect = 1.000e-146
Identity = 254/353 (71.95%), Postives = 308/353 (87.25%), Query Frame = 0 
Query:    1 MKDDPLSFKVLNVFNDFLHLPIVDDLIWHLYHIIRLLLCPLGAIGVLLSFLIKLCLGAFITRFEAPKGRAILVTGCDSGFGCDFSLSLVKKGWKVYAGCLTPQGVAALQTRAAGSAGTMIALPMDVTKQADIDRMVKKIKEECPKKLFAVVNNAGVGQGGLVDWTPLESYRKTLEVNLFAMIAVCKACLPLLKESKGRIVNVTSIAGIFYGAPCMSAYAASKHAAEAFTTSLRFEMEGWGIKVITINPSFHRTQIATGAAATLKTSYDALDDVTKAEYGPEYLAAVQRLTSDHTDGCWDPSHVVNALMKATTAVMPRTQYIVGADATFYLLPLMNLPTPVVEKLMTVSLLKEL 354
            M+ DP+  K+LN+ ND +HLPIVDD+ WHLYH +RLLL PL A+G+L+SFL+KL  GA +TR E PKGRA+L+TGCD+GFG D +++LVKKGW+VYAGCLT   VA L+T+AAGSAG+M+++ MDVTKQADIDR+V++I +E PK+LFAVV NAGVG+GGLVDWTPL +YR  +EVNLFAMIA CKACLPLLKESKGRIVNVTS+AGIF GAPCMSAYAASKHAAEAF+TSLRFE+EGWGI+V+T+NPSFHRT+I+T AA T+K +YD LD  T+AEYG EYL AVQ+LTSD TDGCWDP HVVN L++ATTAV PRTQYIVGADATF LLPLMNLPTP +EK+++ +LL+ +
Sbjct: 1201 MQGDPIFIKMLNLMNDIMHLPIVDDIAWHLYHFVRLLLGPLWALGLLISFLVKLLSGALVTRLEQPKGRAVLITGCDTGFGYDLAIALVKKGWRVYAGCLTQAAVAELKTKAAGSAGSMVSVLMDVTKQADIDRVVEQIAKESPKQLFAVVCNAGVGRGGLVDWTPLATYRAIMEVNLFAMIATCKACLPLLKESKGRIVNVTSMAGIFLGAPCMSAYAASKHAAEAFSTSLRFELEGWGIRVVTVNPSFHRTRISTNAAETVKQAYDDLDAKTQAEYGLEYLRAVQKLTSDQTDGCWDPRHVVNTLVRATTAVSPRTQYIVGADATFCLLPLMNLPTPDIEKIVSFTLLQNM 1553
The following BLAST results are available for this feature:
BLAST of NO11G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25060.11.000e-14671.95serine threonine-protein kinase dclk3 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01750NO11G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01750.1NO11G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01750.1.cds1NO11G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01750.1.cds2NO11G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01750.1.cds3NO11G01750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01750.1.cds4NO11G01750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01750.1 ID=NO11G01750.1|Name=NO11G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
CACAAATTCAAAACCGGCGGGTTCGTGCGCGCTGGTCACACACTGCAAGC
ATACAGTGTCCCGGTCATCGAGGCACCGTACAAATGCTTAATTTGTAGTT
GGCTCCAGCAGGCAGGCTTTCGGAAACAACTAGGGAACCAAAGCTCAAGG
GAACTCATCATCGCGTCTCGGCGAACACAATCAGTCAGGGTCAATCGAGA
CACAAGCCACCGCAGCGAGAGGAAGATGAAAGACGACCCGTTGTCCTTCA
AGGTACTGAATGTCTTCAATGACTTCCTTCACCTCCCCATCGTTGACGAC
TTGATATGGCACCTCTACCACATTATTCGCCTTCTCCTTTGCCCTCTTGG
GGCCATTGGCGTGCTGCTATCCTTCCTTATCAAGCTCTGTTTAGGCGCCT
TCATCACGCGCTTCGAGGCCCCGAAAGGACGTGCTATTCTTGTGACAGGC
TGTGACTCGGGGTTTGGATGCGATTTTTCTTTATCACTGGTCAAGAAAGG
ATGGAAGGTCTATGCCGGCTGCTTAACCCCGCAAGGCGTGGCTGCGCTTC
AGACCAGGGCGGCCGGCAGTGCGGGAACCATGATAGCATTGCCGATGGAC
GTGACAAAGCAGGCGGACATTGACCGTATGGTAAAAAAGATCAAGGAGGA
GTGCCCGAAGAAACTTTTTGCGGTGGTGAATAACGCTGGGGTGGGTCAGG
GAGGTCTTGTGGATTGGACGCCTTTGGAGTCCTATCGCAAGACGCTGGAA
GTGAACCTGTTTGCCATGATCGCAGTCTGCAAGGCTTGCCTGCCGTTGTT
GAAGGAATCGAAAGGTCGGATTGTTAATGTTACGAGCATTGCCGGTATCT
TTTATGGCGCTCCCTGTATGAGTGCCTATGCAGCCTCCAAACACGCTGCC
GAGGCCTTCACGACATCGCTTCGCTTCGAGATGGAAGGATGGGGAATCAA
GGTTATCACTATTAACCCCTCTTTTCACCGTACGCAAATTGCGACGGGCG
CCGCGGCCACGCTCAAGACCTCATACGACGCCCTGGACGACGTCACCAAG
GCAGAATATGGGCCGGAGTACCTGGCGGCCGTGCAGAGACTGACATCGGA
CCACACGGACGGTTGCTGGGACCCAAGTCACGTAGTGAATGCCTTGATGA
AGGCCACCACTGCGGTAATGCCACGCACTCAGTATATCGTTGGGGCGGAC
GCTACCTTTTACTTACTGCCTCTCATGAATCTACCTACCCCGGTTGTTGA
AAAACTAATGACTGTGTCTCTCCTTAAGGAGTTGGTTCCTGCGAGGGAGA
AGGCGGCACTTGCTCTGCAGAAGAATGCGAAGGGGAAAGAGGGAAAGAAG
ACGAAGTAGATAAATCAGTGGCGATGAGCAAGAGAGAGGATGTTGGAGGT
GGGAAAGGAATTTAAAATGGGCCCTCCTTGTTCTTGCCCTTTTTTCTCGT
TGATGGCCAAAGAGGGGAAAGGGATCAATCAATAATCAAACATTCGGTAA
ATATTGTACCCATTCTTCCTCCCTTTTCTACTGCACATGCACAAAGAGGC
AGCACTCCATTGACACTTTTATACAGAAATGTAGCCTTGCATATACGTAC
GTACATACATGTAGTCCCATCCCAAAGGGACTTCGAGCTATCAACGAGTG
AGAGGAATACACACTTTCGCGAGATTTCTGAAGCCCGAATAAGCTGAAAG
CCAACCCAGGAATGAGAAAGTAACAACTGCGAACAAAACCAGCAGAGAGG
GACAAAGGAAAGAAAAAACAGATACCGAAAATAAGGAAGATATGCGTGTA
TGACTTTGCCTTTAC
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protein sequence of NO11G01750.1

>NO11G01750.1-protein ID=NO11G01750.1-protein|Name=NO11G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MKDDPLSFKVLNVFNDFLHLPIVDDLIWHLYHIIRLLLCPLGAIGVLLSF
LIKLCLGAFITRFEAPKGRAILVTGCDSGFGCDFSLSLVKKGWKVYAGCL
TPQGVAALQTRAAGSAGTMIALPMDVTKQADIDRMVKKIKEECPKKLFAV
VNNAGVGQGGLVDWTPLESYRKTLEVNLFAMIAVCKACLPLLKESKGRIV
NVTSIAGIFYGAPCMSAYAASKHAAEAFTTSLRFEMEGWGIKVITINPSF
HRTQIATGAAATLKTSYDALDDVTKAEYGPEYLAAVQRLTSDHTDGCWDP
SHVVNALMKATTAVMPRTQYIVGADATFYLLPLMNLPTPVVEKLMTVSLL
KELVPAREKAALALQKNAKGKEGKKTK*
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mRNA from alignment at chr11:574632..576823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01750.1 ID=NO11G01750.1|Name=NO11G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at chr11:574632..576823- (Nannochloropsis oceanica)
CACAAATTCAAAACCGGCGGGTTCGTGCGCGCTGGTCACACACTGCAAGC
ATACAGTGTCCCGGTCATCGAGGCACCGTACAAATGCTTAATTTGTAGTT
GGCTCCAGCAGGCAGGCTTTCGGAAACAACTAGGGAACCAAAGCTCAAGG
GAACTCATCATCGCGTCTCGGCGAACACAATCAGTCAGGGTCAATCGAGA
CACAAGCCACCGCAGCGAGAGGAAGATGAAAGACGACCCGTTGTCCTTCA
AGGTGTAAGTACCCGTGTTTTGTCAGTTCGCTTGTTTGACCATCCGAGGT
CCGCTTGTCTTCCCTCAACAACTGTACCAGAGCCACTTGCTTGCCTCGTC
CCCACCACATCACTCATGCCTCATTCCCCCCTCCCTTCTTGCCCCCTTCA
GACTGAATGTCTTCAATGACTTCCTTCACCTCCCCATCGTTGACGACTTG
ATATGGCACCTCTACCACATTATTCGCCTTCTCCTTTGCCCTCTTGGGGC
CATTGGCGTGCTGCTATCCTTCCTTATCAAGCTCTGTTTAGGCGCCTTCA
TCACGCGCTTCGAGGCCCCGAAAGGACGTGCTATTCTTGTGACAGGCTGT
GACTCGGGGTTTGGATGCGATTTTTCTTTATCACTGGTCAAGAAAGGATG
GAAGGTCTATGCCGGCTGCTTAACCCCGCAAGGCGTGGCTGCGCTTCAGA
CCAGGGCGGCCGGCAGTGCGGGAACCATGATAGCATTGCCGATGGACGTG
ACAAAGCAGGCGGACATTGACCGTATGGTAAAAAAGATCAAGGAGGAGTG
CCCGAAGAAACTTTTTGCGGTGGTGAATAACGCTGGGGTGGGTCAGGGAG
GTCTTGTGGATTGGACGCCTTTGGAGTCCTATCGCAAGACGCTGGAAGTG
AACCTGTTTGCCATGATCGCAGTCTGCAAGGCTTGCCTGCCGTTGTTGAA
GGAATCGAAAGGTCGGATTGTTAATGTTACGAGCATTGCCGGTATCTTTT
ATGGCGCTCCCTGTATGAGTGCCTATGCAGCCTCCAAACACGGTACGCCG
GAGACCAGCATAAAAACAACCACGCCGCTGCTGCTGTCTTTCCTGATTTA
TTTTATTAATATAATTTTTCTTCATCTCTTTCCACAATTGCCATAGCTGC
CGAGGCCTTCACGACATCGCTTCGCTTCGAGATGGAAGGATGGGGAATCA
AGGTGAGAAAAGGACGAGGAAGCAAGGAAAGTTAACAAAATCAGGGGGAA
TGGAAGGGGAGACATATGTAAGCCCGGAAAAAGCCCGTTTCATTCACCCA
CCCCGCTTTCCCTTAATTCACCCACTAGGTTATCACTATTAACCCCTCTT
TTCACCGTACGCAAATTGCGACGGGCGCCGCGGCCACGCTCAAGACCTCA
TACGACGCCCTGGACGACGTCACCAAGGCAGAATATGGGCCGGAGTACCT
GGCGGCCGTGCAGAGACTGACATCGGACCACACGGACGGTTGCTGGGACC
CAAGTCACGTAGTGAATGCCTTGATGAAGGCCACCACTGCGGTAATGCCA
CGCACTCAGTATATCGTTGGGGCGGACGCTACCTTTTACTTACTGCCTCT
CATGAATCTACCTACCCCGGTTGTTGAAAAACTAATGACTGTGTCTCTCC
TTAAGGAGTTGGTTCCTGCGAGGGAGAAGGCGGCACTTGCTCTGCAGAAG
AATGCGAAGGGGAAAGAGGGAAAGAAGACGAAGTAGATAAATCAGTGGCG
ATGAGCAAGAGAGAGGATGTTGGAGGTGGGAAAGGAATTTAAAATGGGCC
CTCCTTGTTCTTGCCCTTTTTTCTCGTTGATGGCCAAAGAGGGGAAAGGG
ATCAATCAATAATCAAACATTCGGTAAATATTGTACCCATTCTTCCTCCC
TTTTCTACTGCACATGCACAAAGAGGCAGCACTCCATTGACACTTTTATA
CAGAAATGTAGCCTTGCATATACGTACGTACATACATGTAGTCCCATCCC
AAAGGGACTTCGAGCTATCAACGAGTGAGAGGAATACACACTTTCGCGAG
ATTTCTGAAGCCCGAATAAGCTGAAAGCCAACCCAGGAATGAGAAAGTAA
CAACTGCGAACAAAACCAGCAGAGAGGGACAAAGGAAAGAAAAAACAGAT
ACCGAAAATAAGGAAGATATGCGTGTATGACTTTGCCTTTAC
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Coding sequence (CDS) from alignment at chr11:574632..576823-

>NO11G01750.1 ID=NO11G01750.1|Name=NO11G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr11:574632..576823- (Nannochloropsis oceanica)
ATGAAAGACGACCCGTTGTCCTTCAAGGTACTGAATGTCTTCAATGACTT
CCTTCACCTCCCCATCGTTGACGACTTGATATGGCACCTCTACCACATTA
TTCGCCTTCTCCTTTGCCCTCTTGGGGCCATTGGCGTGCTGCTATCCTTC
CTTATCAAGCTCTGTTTAGGCGCCTTCATCACGCGCTTCGAGGCCCCGAA
AGGACGTGCTATTCTTGTGACAGGCTGTGACTCGGGGTTTGGATGCGATT
TTTCTTTATCACTGGTCAAGAAAGGATGGAAGGTCTATGCCGGCTGCTTA
ACCCCGCAAGGCGTGGCTGCGCTTCAGACCAGGGCGGCCGGCAGTGCGGG
AACCATGATAGCATTGCCGATGGACGTGACAAAGCAGGCGGACATTGACC
GTATGGTAAAAAAGATCAAGGAGGAGTGCCCGAAGAAACTTTTTGCGGTG
GTGAATAACGCTGGGGTGGGTCAGGGAGGTCTTGTGGATTGGACGCCTTT
GGAGTCCTATCGCAAGACGCTGGAAGTGAACCTGTTTGCCATGATCGCAG
TCTGCAAGGCTTGCCTGCCGTTGTTGAAGGAATCGAAAGGTCGGATTGTT
AATGTTACGAGCATTGCCGGTATCTTTTATGGCGCTCCCTGTATGAGTGC
CTATGCAGCCTCCAAACACGCTGCCGAGGCCTTCACGACATCGCTTCGCT
TCGAGATGGAAGGATGGGGAATCAAGGTTATCACTATTAACCCCTCTTTT
CACCGTACGCAAATTGCGACGGGCGCCGCGGCCACGCTCAAGACCTCATA
CGACGCCCTGGACGACGTCACCAAGGCAGAATATGGGCCGGAGTACCTGG
CGGCCGTGCAGAGACTGACATCGGACCACACGGACGGTTGCTGGGACCCA
AGTCACGTAGTGAATGCCTTGATGAAGGCCACCACTGCGGTAATGCCACG
CACTCAGTATATCGTTGGGGCGGACGCTACCTTTTACTTACTGCCTCTCA
TGAATCTACCTACCCCGGTTGTTGAAAAACTAATGACTGTGTCTCTCCTT
AAGGAGTTGGTTCCTGCGAGGGAGAAGGCGGCACTTGCTCTGCAGAAGAA
TGCGAAGGGGAAAGAGGGAAAGAAGACGAAGTAG
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Synonyms
Publications