NO11G01610.1, NO11G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01610.1
Unique NameNO11G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr11:534856..536743 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:534856..536743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01610.1 vs.
Match: EWM25050.1 (alcohol dehydrogenase [Nannochloropsis gaditana]; EWM25051.1 alcohol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 618.2 bits (1593), Expect = 1.700e-173
Identity = 298/356 (83.71%), Postives = 319/356 (89.61%), Query Frame = 0 
Query:   34 SPPTAAAHHLPACMLAGVADHHGDRFDMREVPVETPGPGQVLVKIVTSGVCHTDVHAVDGDWPAPTKLPLIPGHEGAGIIVAVGPDVSSTIAAVGDRVGIPWLHSSCGTCEHCLSGHENLCPKQDNTGYSVDGCFAQYTLAPAAHVAKIPDAVSFEQAAPILCAGVTTYSGIKATEARPGQFLTVIGAAGGLGHLAVQFGVAMGLRVLALDCGEDKLKFCTDTLGAEAAFEAMDPEVAAHVTKATNGGSHGVLCLAPSIGAFKSAVGLCRRGGTIVMVGLPKGDMPLNIFDVVIRGITVRGSIVGTRKDLAEALDFAAQGKVNCHVDVHPFKELNQMFDDLRSGKVLGRIVLNVSG 390
            S  T AA  LP  MLAGVADHHGDRFDMRE+PV  PG GQ LVK+VTSGVCHTDVHAVDGDWPAPTKLPL+PGHEGAG++VAVGP VSST+ ++GDRVGIPWLHSSCG+CE CLSG ENLCP QDNTGYSVDGCFAQY LAPAAH+AKIPD VSFEQAAPILCAGVTTYS IKATEARPGQFLTVIGAAGGLGHLAVQFGVA+GLRV+ALD G DKLKFCTDTLGAEAAFEAMDP V   V   T GGSHGVLCLAPSIGAFKSAV LCRRGGTIVMVGLPKGD+PLNIFD+VIRGITVRGSIVGTRKDL EALDFAA+GKV CH ++H F ELNQ+FD LRSGKV+GR+VL+V G
Sbjct:    5 SASTTAAAQLPGRMLAGVADHHGDRFDMREIPVTPPGVGQALVKVVTSGVCHTDVHAVDGDWPAPTKLPLVPGHEGAGVVVAVGPGVSSTVVSLGDRVGIPWLHSSCGSCEFCLSGRENLCPLQDNTGYSVDGCFAQYVLAPAAHLAKIPDEVSFEQAAPILCAGVTTYSAIKATEARPGQFLTVIGAAGGLGHLAVQFGVALGLRVMALDRGADKLKFCTDTLGAEAAFEAMDPGVVDQVIATTKGGSHGVLCLAPSIGAFKSAVSLCRRGGTIVMVGLPKGDLPLNIFDIVIRGITVRGSIVGTRKDLDEALDFAARGKVKCHTEMHGFGELNQVFDQLRSGKVMGRLVLSVDG 360
The following BLAST results are available for this feature:
BLAST of NO11G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25050.11.700e-17383.71alcohol dehydrogenase [Nannochloropsis gaditana]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01610NO11G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01610.1NO11G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01610.1.cds1NO11G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01610.1.cds2NO11G01610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01610.1.cds3NO11G01610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01610.1.cds4NO11G01610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01610.1.cds5NO11G01610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01610.1 ID=NO11G01610.1|Name=NO11G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ATGAAAAACTACAAAGCGGCCGTCGAGGCTCGTGATCTATGTGGGAGCAT
CTGTTTCGTCGTAACCCGCGCCACGTGCAGTGTTATCTGCTCCACTATGT
CTCCACCCACTGCCGCCGCCCATCATCTTCCGGCCTGCATGCTTGCAGGT
GTGGCGGACCACCACGGCGACCGCTTTGACATGCGAGAGGTCCCCGTCGA
GACGCCGGGGCCTGGCCAGGTCCTCGTCAAGATTGTCACGAGCGGTGTCT
GCCATACCGACGTCCACGCCGTCGATGGCGACTGGCCTGCGCCCACGAAG
CTCCCTCTCATTCCCGGACACGAAGGTGCCGGCATAATTGTTGCCGTCGG
CCCCGATGTAAGCAGTACCATTGCTGCCGTTGGAGACCGCGTGGGCATCC
CCTGGCTTCATTCCAGCTGCGGCACCTGCGAGCATTGCTTGTCGGGTCAC
GAGAATTTATGTCCCAAGCAAGACAACACGGGTTATTCGGTCGACGGTTG
CTTTGCTCAGTATACGCTGGCTCCGGCAGCGCACGTGGCGAAGATTCCCG
ATGCCGTTAGTTTCGAACAGGCCGCCCCCATCCTCTGCGCCGGCGTTACA
ACCTACTCAGGCATCAAAGCCACCGAGGCTCGCCCCGGCCAGTTCCTCAC
AGTCATTGGCGCCGCCGGTGGATTGGGGCACCTGGCCGTGCAATTTGGTG
TGGCCATGGGTTTGCGTGTTTTGGCACTGGATTGTGGAGAGGATAAATTG
AAATTTTGCACAGACACATTGGGTGCGGAGGCGGCGTTCGAGGCAATGGA
CCCGGAGGTGGCAGCGCACGTGACCAAGGCCACTAACGGCGGATCGCACG
GCGTCCTCTGCCTCGCTCCCTCCATCGGCGCCTTCAAATCCGCCGTGGGG
CTTTGTCGTCGAGGGGGCACAATTGTTATGGTTGGATTGCCCAAAGGTGA
TATGCCTCTCAACATTTTTGACGTTGTCATTCGGGGGATTACAGTGCGAG
GGAGTATTGTGGGGACCCGAAAGGATTTGGCGGAGGCTTTGGATTTTGCG
GCGCAGGGGAAGGTGAATTGTCATGTGGATGTGCATCCGTTTAAGGAGCT
GAATCAGATGTTTGATGATTTGCGCTCAGGGAAGGTATTGGGACGGATTG
TGTTGAACGTGAGTGGGGACTAG
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protein sequence of NO11G01610.1

>NO11G01610.1-protein ID=NO11G01610.1-protein|Name=NO11G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MKNYKAAVEARDLCGSICFVVTRATCSVICSTMSPPTAAAHHLPACMLAG
VADHHGDRFDMREVPVETPGPGQVLVKIVTSGVCHTDVHAVDGDWPAPTK
LPLIPGHEGAGIIVAVGPDVSSTIAAVGDRVGIPWLHSSCGTCEHCLSGH
ENLCPKQDNTGYSVDGCFAQYTLAPAAHVAKIPDAVSFEQAAPILCAGVT
TYSGIKATEARPGQFLTVIGAAGGLGHLAVQFGVAMGLRVLALDCGEDKL
KFCTDTLGAEAAFEAMDPEVAAHVTKATNGGSHGVLCLAPSIGAFKSAVG
LCRRGGTIVMVGLPKGDMPLNIFDVVIRGITVRGSIVGTRKDLAEALDFA
AQGKVNCHVDVHPFKELNQMFDDLRSGKVLGRIVLNVSGD*
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mRNA from alignment at chr11:534856..536743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01610.1 ID=NO11G01610.1|Name=NO11G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at chr11:534856..536743- (Nannochloropsis oceanica)
ATGAAAAACTACAAAGCGGCCGTCGAGGCTCGTGATCTATGTGGGAGGTA
CGGTCGCCTCCGGCAGGAGTCTCGGCGTTTTTTTGGGTGGGCTCACAGAA
TCTTCGCGTGTTGCCAGTGCTCTAGAAGAACAGTCCACTCATTTTACTCA
ACCCCAACACCTCTTTATCATACAAAATCGCAGCATCTGTTTCGTCGTAA
CCCGCGCCACGTGCAGTGTTATCTGCTCCACTATGTCTCCACCCACTGCC
GCCGCCCATCATCTTCCGGCCTGCATGCTTGCAGGTGTGGCGGACCACCA
CGGCGACCGCTTTGACATGCGAGAGGTCCCCGTCGAGACGCCGGGGCCTG
GCCAGGTCCTCGTCAAGATTGTCACGAGCGGTGTCTGCCATGTAGGTGGA
GGATTTGGCGTGAAGATAGAGAGAGGGGGAAAGGCGGGGATTCAGACAGC
ACGTGAGTGTTGAATCCTGGAAGGCCGATGGCACGTGGATGTTGAATGAT
AGGCTCAACCATATGAATGAACACACCGTTTCATGCGAGGTCCTTTGCTG
AGAAATGGCAACCCCTCAACGCCTACTTCCTCATCCCAATCGCAATTACC
CTTTCCCATTCCCCACGACCAGACCGACGTCCACGCCGTCGATGGCGACT
GGCCTGCGCCCACGAAGCTCCCTCTCATTCCCGGACACGAAGGTGCCGGC
ATAATTGTTGCCGTCGGCCCCGATGTAAGCAGTACCATTGCTGCCGTTGG
AGACCGCGTGGGCATCCCCTGGCTTCATTCCAGCTGCGGCACCTGCGAGC
ATTGCTTGTCGGGTCACGAGAATTTATGTCCCAAGCAAGACAACACGGGT
TATTCGGTCGACGGTTGCTTTGCTCAGTATACGCTGGCTCCGGCAGCGCA
CGTGGCGAAGATTCCCGATGCCGTTAGTTTCGAACAGGTATGTGGGAGGT
CAAGGGAGGGAAGGATTTGAGGAGGGACAGCTTTACTTGAAGTGAGAAGT
CGTTAATGAAGTACCCAGGCACAATTTTGCTTTAAATACTGATCTAATCC
TTCTTCAAATGCATTTCTTGATAATTCACGTTTCTTTTGGCATGTCTTTT
TCTCCTGAAAAGGCCGCCCCCATCCTCTGCGCCGGCGTTACAACCTACTC
AGGCATCAAAGCCACCGAGGCTCGCCCCGGCCAGTTCCTCACAGTCATTG
GCGCCGCCGGTGGATTGGGGCACCTGGCCGTGCAATTTGGTGTGGCCATG
GGTTTGCGTGTTTTGGCACTGGATTGTGGAGAGGATAAATTGAAATTTTG
CACAGACACATTGGGTGCGGAGGCGGCGTTCGAGGCAATGGACCCGGAGG
TGGCAGCGCACGTAAGAAGGAGGGAAGGAGGAGGGGAAGCGAGGGATGCC
GCAACTATATTGTTTCATATTCTTCTCACAATTTCCCCATATGTGTTCTA
CTTTCCTTGGAATCAGACAGATCCCGTTACTCATCGGACCCCTCTTATCC
CCCCCCTCCTTCCCTCCCTTGTTGCCTCGCTCAGGTGACCAAGGCCACTA
ACGGCGGATCGCACGGCGTCCTCTGCCTCGCTCCCTCCATCGGCGCCTTC
AAATCCGCCGTGGGGCTTTGTCGTCGAGGGGGCACAATTGTTATGGTTGG
ATTGCCCAAAGGTGATATGCCTCTCAACATTTTTGACGTTGTCATTCGGG
GGATTACAGTGCGAGGGAGTATTGTGGGGACCCGAAAGGATTTGGCGGAG
GCTTTGGATTTTGCGGCGCAGGGGAAGGTGAATTGTCATGTGGATGTGCA
TCCGTTTAAGGAGCTGAATCAGATGTTTGATGATTTGCGCTCAGGGAAGG
TATTGGGACGGATTGTGTTGAACGTGAGTGGGGACTAG
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Coding sequence (CDS) from alignment at chr11:534856..536743-

>NO11G01610.1 ID=NO11G01610.1|Name=NO11G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr11:534856..536743- (Nannochloropsis oceanica)
ATGAAAAACTACAAAGCGGCCGTCGAGGCTCGTGATCTATGTGGGAGCAT
CTGTTTCGTCGTAACCCGCGCCACGTGCAGTGTTATCTGCTCCACTATGT
CTCCACCCACTGCCGCCGCCCATCATCTTCCGGCCTGCATGCTTGCAGGT
GTGGCGGACCACCACGGCGACCGCTTTGACATGCGAGAGGTCCCCGTCGA
GACGCCGGGGCCTGGCCAGGTCCTCGTCAAGATTGTCACGAGCGGTGTCT
GCCATACCGACGTCCACGCCGTCGATGGCGACTGGCCTGCGCCCACGAAG
CTCCCTCTCATTCCCGGACACGAAGGTGCCGGCATAATTGTTGCCGTCGG
CCCCGATGTAAGCAGTACCATTGCTGCCGTTGGAGACCGCGTGGGCATCC
CCTGGCTTCATTCCAGCTGCGGCACCTGCGAGCATTGCTTGTCGGGTCAC
GAGAATTTATGTCCCAAGCAAGACAACACGGGTTATTCGGTCGACGGTTG
CTTTGCTCAGTATACGCTGGCTCCGGCAGCGCACGTGGCGAAGATTCCCG
ATGCCGTTAGTTTCGAACAGGCCGCCCCCATCCTCTGCGCCGGCGTTACA
ACCTACTCAGGCATCAAAGCCACCGAGGCTCGCCCCGGCCAGTTCCTCAC
AGTCATTGGCGCCGCCGGTGGATTGGGGCACCTGGCCGTGCAATTTGGTG
TGGCCATGGGTTTGCGTGTTTTGGCACTGGATTGTGGAGAGGATAAATTG
AAATTTTGCACAGACACATTGGGTGCGGAGGCGGCGTTCGAGGCAATGGA
CCCGGAGGTGGCAGCGCACGTGACCAAGGCCACTAACGGCGGATCGCACG
GCGTCCTCTGCCTCGCTCCCTCCATCGGCGCCTTCAAATCCGCCGTGGGG
CTTTGTCGTCGAGGGGGCACAATTGTTATGGTTGGATTGCCCAAAGGTGA
TATGCCTCTCAACATTTTTGACGTTGTCATTCGGGGGATTACAGTGCGAG
GGAGTATTGTGGGGACCCGAAAGGATTTGGCGGAGGCTTTGGATTTTGCG
GCGCAGGGGAAGGTGAATTGTCATGTGGATGTGCATCCGTTTAAGGAGCT
GAATCAGATGTTTGATGATTTGCGCTCAGGGAAGGTATTGGGACGGATTG
TGTTGAACGTGAGTGGGGACTAG
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Synonyms
Publications