NO11G01600.1, NO11G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01600.1
Unique NameNO11G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr11:531534..533074 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:531534..533074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01600.1 vs.
Match: XP_005718227.1 (Histone deacetylases (HDA1 superfamily) [Chondrus crispus]; CDF38343.1 Histone deacetylases (HDA1 superfamily) [Chondrus crispus])

HSP 1 Score: 214.9 bits (546), Expect = 4.100e-52
Identity = 115/274 (41.97%), Postives = 163/274 (59.49%), Query Frame = 0 
Query:   17 RKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGLR 291
            R   +L  C+AE  GT  +V FG+G    A+L N    L+  A +WG  + L I  TAS+S AHLNPAVS+A+A+FR  +F+ R  + Y  +Q +G  +G      ++      +EQ+  IVRGS  S+     +GE+FP+P + P  +   A                GT +LMF+ILA+ D  Q  +++KE+ P  IG ++  ++++ AP T+A  NPARDFG RLVA M G+GK+A+PGPRN  WVYI  P +GA +GAL +DLLIA GLR
Sbjct:  974 RTAALLHQCVAECIGTMFIVVFGVGSVCVAILTNTSSGLWQIATVWGFGVALAILATASVSGAHLNPAVSLAMALFRPNDFSFRKLIPYWCAQYLGGVLGGAFNLMIYGPLFRYHEQQGGIVRGSAESVLTARAFGEYFPDPGLGPTIISPEAW---------------GTGILMFVILALTDSRQKIIQNKEMLPFYIGFTVAVLITLYAPLTQAGWNPARDFGPRLVAAMAGWGKIAIPGPRNGFWVYIVGPKIGAPIGALLYDLLIARGLR 1232
The following BLAST results are available for this feature:
BLAST of NO11G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005718227.14.100e-5241.97Histone deacetylases (HDA1 superfamily) [Chondrus ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01600NO11G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01600.1NO11G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01600.1.cds1NO11G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01600.1.cds2NO11G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01600.1.cds3NO11G01600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01600.1 ID=NO11G01600.1|Name=NO11G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp
ATGGCTTTCCATCTCGAGGACATCCTCACTGCGTTTACGGAGAAGTACAG
GAAGAACAAGGTGTTGACGAGTTGCCTTGCGGAAGCCACAGGCACCTTCC
TGCTCGTATTTTTCGGCTTAGGCTTCACGGCAAACGCTGTTCTCGTTAAC
GCGCCCATAGACCTCTTTGGTGGAGCTTTCCTATGGGGCTTGGCCTTGAC
TCTGGGCATCTACGTGACCGCCTCCATCTCTACTGCGCATCTGAACCCGG
CTGTTTCAATTGCTCTGGCAATTTTTCGCTCCAAGGAGTTCACACCTCGG
ATGTGCGTGTGTTACATCGTCAGTCAAACCATCGGGGCCTTCATAGGCGC
CCTCCTTGTCTTTGGGCTCTTCAACGACTTTCTCGTCGCATATGAGCAAG
AGAACAATATCGTGCGGGGATCTGTGGCTAGCATTGGGCAAGAGATGATT
TATGGGGAGTTCTTTCCCAATCCCGCAATCATTCCCCACACTGTTGGGAA
CAGCGCTCTTCTCCCGGGAGGCTCGATCGAGCACGCATTTGCCATGGAAT
TTGTTGGTACGTTTTTGTTGATGTTTTTGATCCTGGCAATCGTGGATCGT
AACCAGAACACTTTGAAGCATAAGGAATTGGCGCCACTCATTATTGGCTT
ATCCTTGGTGAGCATCGTTTCTGTTGTGGCCCCGTCGACGGAGGCATGCA
TCAACCCCGCAAGGGACTTCGGTGCGAGGCTCGTGGCGGTGATGATGGGA
TATGGAAAAGTAGCGCTTCCGGGGCCGAGGAACGAAATGTGGGTCTATAT
CTTTGCGCCGATATTGGGGGCGTTGGTGGGAGCGTTGTTCCATGATCTTT
TGATTGCTCCGGGCCTGCGAAGGACTGCGAAACCGTATGTGACGTATCAG
TCGAAGGTCCATGATTTGCAATTGCAGAGGTCGCTGCGCGACATCTTCAG
CAACCAGGGGTCCAAAGACGAAATCAGCAGCCCCTCTTCTGGTGGTGGTC
TCACCCTCGAGCAACAGACGAAGCTGCTTGCCATTCTGGCTGGTGCTGCC
TTTCAAGGCGGCAAGCAGGAGGAAGCGGCGGAGGCAGAGGCACGCCCTGC
CTAA
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protein sequence of NO11G01600.1

>NO11G01600.1-protein ID=NO11G01600.1-protein|Name=NO11G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MAFHLEDILTAFTEKYRKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVN
APIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPR
MCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMI
YGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDR
NQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMG
YGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGLRRTAKPYVTYQ
SKVHDLQLQRSLRDIFSNQGSKDEISSPSSGGGLTLEQQTKLLAILAGAA
FQGGKQEEAAEAEARPA*
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mRNA from alignment at chr11:531534..533074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01600.1 ID=NO11G01600.1|Name=NO11G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp|location=Sequence derived from alignment at chr11:531534..533074- (Nannochloropsis oceanica)
ATGGCTTTCCATCTCGAGGACATCCTCACTGCGTTTACGGAGAAGTACAG
GAAGAACAAGGTGTTGACGAGTTGCCTTGCGGAAGCCACAGGCACCTTCC
TGCTCGTATTTTTCGGCTTAGGCTTCACGGCAAACGCTGTTCTCGTTAAC
GCGCCCATAGACCTCTTTGGTGGAGCTTTCCTATGGGGCTTGGCCTTGAC
TCTGGGCATCTACGTGACCGCCTCCATCTCTACTGGTACGTGCCCGGACA
GGGAATGGGAAAAAGAATAGTTGGCCAAGTGGGCCACTTGTGTTCTTGCC
CGAAGGCCTGGCAGGACTCCTTCATATTGCGCCTTGATTTGACGGCATAC
AAGAAGCATATGAGCAAGCTTACTTCCTGTGTATCTGCCTTATGTGTGAT
GTAGAGAGAGCGGGCATTGGTCGCTATGCTTCTACACGCCGCCACACAAT
ATGCGTTCATGAACATTATCCTTACCGCCCACATCCCTCAAACCTCTCCC
TTTCCCTTCACCCATCCTACACACATAGCGCATCTGAACCCGGCTGTTTC
AATTGCTCTGGCAATTTTTCGCTCCAAGGAGTTCACACCTCGGATGTGCG
TGTGTTACATCGTCAGTCAAACCATCGGGGCCTTCATAGGCGCCCTCCTT
GTCTTTGGGCTCTTCAACGACTTTCTCGTCGCATATGAGCAAGAGAACAA
TATCGTGCGGGGATCTGTGGCTAGCATTGGGCAAGAGATGATTTATGGGG
AGTTCTTTCCCAATCCCGCAATCATTCCCCACACTGTTGGGAACAGCGCT
CTTCTCCCGGGAGGCTCGATCGAGCACGCATTTGCCATGGAATTTGTTGG
TACGTTTTTGTTGATGTTTTTGATCCTGGCAATCGTGGATCGTAACCAGA
ACACTTTGAAGCATAAGGAATTGGCGCCACTCATTATTGGCTTATCCTTG
GTGAGCATCGTTTCTGTTGTGGCCCCGTCGACGGAGGCATGCATCAACCC
CGCAAGGGACTTCGGTGCGAGGCTCGTGGCGGTGATGATGGGATATGGAA
AAGTAGCGCTTCCGGGGCCGAGGAACGAAATGTGGGTCTATATCTTTGCG
CCGATATTGGGGGCGTTGGTGGGAGCGTTGTTCCATGATCTTTTGATTGC
TCCGGGCCTGCGAAGGACTGCGAAACCGTATGTGACGTATCAGTCGAAGG
TCCATGATTTGCAATTGCAGAGGTCGCTGCGGTGAGTGTGTATTTGTCTT
CCCCCCGACGGGTGGAGGGGAAAAGACGAAGGAGGTTGAAGGGGGGGGGG
GTCATACGTATTCGCTTACATTTCCACCCCCTATTTCTCACAATCATCTC
CTGCCCCCTTGATTCACTCAAATAGCGACATCTTCAGCAACCAGGGGTCC
AAAGACGAAATCAGCAGCCCCTCTTCTGGTGGTGGTCTCACCCTCGAGCA
ACAGACGAAGCTGCTTGCCATTCTGGCTGGTGCTGCCTTTCAAGGCGGCA
AGCAGGAGGAAGCGGCGGAGGCAGAGGCACGCCCTGCCTAA
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Coding sequence (CDS) from alignment at chr11:531534..533074-

>NO11G01600.1 ID=NO11G01600.1|Name=NO11G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr11:531534..533074- (Nannochloropsis oceanica)
ATGGCTTTCCATCTCGAGGACATCCTCACTGCGTTTACGGAGAAGTACAG
GAAGAACAAGGTGTTGACGAGTTGCCTTGCGGAAGCCACAGGCACCTTCC
TGCTCGTATTTTTCGGCTTAGGCTTCACGGCAAACGCTGTTCTCGTTAAC
GCGCCCATAGACCTCTTTGGTGGAGCTTTCCTATGGGGCTTGGCCTTGAC
TCTGGGCATCTACGTGACCGCCTCCATCTCTACTGCGCATCTGAACCCGG
CTGTTTCAATTGCTCTGGCAATTTTTCGCTCCAAGGAGTTCACACCTCGG
ATGTGCGTGTGTTACATCGTCAGTCAAACCATCGGGGCCTTCATAGGCGC
CCTCCTTGTCTTTGGGCTCTTCAACGACTTTCTCGTCGCATATGAGCAAG
AGAACAATATCGTGCGGGGATCTGTGGCTAGCATTGGGCAAGAGATGATT
TATGGGGAGTTCTTTCCCAATCCCGCAATCATTCCCCACACTGTTGGGAA
CAGCGCTCTTCTCCCGGGAGGCTCGATCGAGCACGCATTTGCCATGGAAT
TTGTTGGTACGTTTTTGTTGATGTTTTTGATCCTGGCAATCGTGGATCGT
AACCAGAACACTTTGAAGCATAAGGAATTGGCGCCACTCATTATTGGCTT
ATCCTTGGTGAGCATCGTTTCTGTTGTGGCCCCGTCGACGGAGGCATGCA
TCAACCCCGCAAGGGACTTCGGTGCGAGGCTCGTGGCGGTGATGATGGGA
TATGGAAAAGTAGCGCTTCCGGGGCCGAGGAACGAAATGTGGGTCTATAT
CTTTGCGCCGATATTGGGGGCGTTGGTGGGAGCGTTGTTCCATGATCTTT
TGATTGCTCCGGGCCTGCGAAGGACTGCGAAACCGTATGTGACGTATCAG
TCGAAGGTCCATGATTTGCAATTGCAGAGGTCGCTGCGCGACATCTTCAG
CAACCAGGGGTCCAAAGACGAAATCAGCAGCCCCTCTTCTGGTGGTGGTC
TCACCCTCGAGCAACAGACGAAGCTGCTTGCCATTCTGGCTGGTGCTGCC
TTTCAAGGCGGCAAGCAGGAGGAAGCGGCGGAGGCAGAGGCACGCCCTGC
CTAA
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Synonyms
Publications