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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:507358..509833 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01510.2 vs.
Match: EWM25071.1 (translation initiation factor eif-2b subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 508.1 bits (1307), Expect = 2.400e-140 Identity = 259/312 (83.01%), Postives = 281/312 (90.06%), Query Frame = 0
Query: 62 RTVMGTCRWSTAAELMRIVKRVGKALIDAQPLELVIGNIVRRILFLIRDEHANKLREDRARHGLATTSLSEDGEAADELNVAVPQLRMAVMEAIGELQLELDNAYGEICELALEHIHANEVILTVGRSRTVEKFLKEAAERRRIFEVIVAESAPTLAGREMAKSLAAGGIETTVISDCAVYAIMARVNQVLLPCRAMIANGGLIAPCGGHMAALAAKELSVPVVCVTGLFKLSPVYRHDQDAFNDLKSPSSLIPYPEAAAMAEGTVDILNPAYDYVPPELVDLYITNTGGHQTSYVYRLLGEYYHHDDSNLD 374
+ VMGTCRW+TAAELM +VKRVGKAL+DAQPL+LV+GN+VRRILF+IR+EH NKLRE RAR G AT SLS+DGEA +EL +VP LR VMEAIGELQLELDN Y EICELALEHIHANEVILTVGRS+TVE FL+EAAERRR FEVIVAESAP +AGREMAKSLAA GIETTVISD AVYAIMARVNQVLLPCRA+IANGGLIAPCGGHMAALAAKELSVPVVCVTGLFKLSPVYRHDQDAFNDL+SPS+LI Y + + E D LNPAYDYVPPELVDLYITNTGGHQT Y+YRLLGEYYHHDDS+LD
Sbjct: 53 KAVMGTCRWTTAAELMSVVKRVGKALVDAQPLQLVVGNVVRRILFIIREEHKNKLREVRAREGGATASLSDDGEAGNELEASVPGLRTGVMEAIGELQLELDNVYNEICELALEHIHANEVILTVGRSKTVETFLREAAERRRAFEVIVAESAPDIAGREMAKSLAAAGIETTVISDSAVYAIMARVNQVLLPCRALIANGGLIAPCGGHMAALAAKELSVPVVCVTGLFKLSPVYRHDQDAFNDLRSPSALIEYADTQLLPE--ADFLNPAYDYVPPELVDLYITNTGGHQTFYLYRLLGEYYHHDDSSLD 362
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01510.2 ID=NO11G01510.2|Name=NO11G01510.2|organism=Nannochloropsis oceanica|type=mRNA|length=2365bp
TGCACAGGTTGTTTGTATCCTGATCGCTCATTCGTCATGATATTAATTGC
TAACTCACATATGCACATTCTTAGCGGAACGAAGCTACGAATCATCATCC
AGTCGAGCATACGCTTGACTCTCCGCCTCTGACGGCGACTACTTCTCCCC
CGCCAATATCGCTGATGACGATAGTAGCACGAGGTCCGCCGGCTTGAACA
GCCGCCGGACCCACCAGGAGTTCGGGCACCATGCCCCACGTAGACGGCCC
GTTCGTAGGTCAAAACGAGTACCGAAGACAGGGTCCTGCACTGACAAAAT
TGCCGGATCCACTTCCGCGTGTAACAAGGAGTGGTTAGTGGGTGGGCAGG
TATCTTGTAGCACGAAGGTGCGACCATCTGCGATGCTGATGGTGATTGTG
GCCCGATCGCTTTGAGTGAGAGCGTGCCTCGTCAAACGGTAGAAGGGAGT
GGCCTGGAGAGCCATGCAGGCAGAGGCGTGGGGAACATTTGCAAGCAGGA
TAGGACATGGCATAAATGCCCTTGCAATAACCACCAGCTCGAGGAGTAGG
AGCAGGAGCAGCTTTGGGATGCAGCGCTGAAGTCTAGCTGCTGCCATTAG
AGGTCCAACATTTGGCAGCGCAGCGTCAGACATGGGTTGACGACGGGTCT
GTCAGTGCTTCTGATCAGGAGTGTTGTCGGAATTGTTGTTGTTAATTTTG
TTAAGGTCATTGTTGTAAGCACGCGAGGTACCTAGAGTACAAGTGATGCC
TCGCCTTCGGCCTCTCCTTCAGGCGGCGATTCTCAGACCTCTCCTCCTCC
CACCAGTACCAATCACCCACCCATCCCGTCCCACACCCCACCATAGACTG
GCAGGAGCGATGGACTCATCAGTCACGCCCCCTAAAAAAGATCTCGACAC
TTGGTTGTCCACGTGGCCGAACGTGCATGGCCAATTTCGCTTTCTCGTCA
CGAGATTGCAGCGGCGCAAGGTGGTAGGCTCCCTACAATGCGCCAAGATG
ACGATCGAATTGCTCAAGTAAGTGGTGCAAGGGGTGGGAAGGGAAGAAGC
TGGCGTAGTAAATGAGGCCGGCAGCCGAAGTCTTGCCGCCAAGTGCTCCG
CTTCGAACTCCTCATCCTCACCATGAACAAGGCTGGTTATGAGCAAGTGC
ACGCCCTGTCACCCACCACCGCTTGCAATGCCTGCTTGACACATGGGCTC
GCATTACTTCCCTCCTTACCCCCCCGTCTCATTATCCGCCCCGCCCCTGA
GACAAGAAACGATGCCTGGCACTCCTCCGCACGGAATATCCTCAAAACCT
AACTTAATACCCCTTCATGTTTTTTTGCTAACTAACATTCGCCATCTCGA
ACACCGAACTCTAAATAATACACATAGGACCGTGATGGGCACCTGCCGAT
GGTCAACCGCCGCGGAGCTCATGCGCATCGTCAAACGTGTGGGTAAAGCC
CTCATCGACGCCCAGCCTCTTGAACTTGTTATTGGAAACATTGTCCGTCG
TATCCTTTTTCTCATCCGAGACGAGCATGCCAACAAATTACGGGAGGATC
GGGCGCGACATGGTTTAGCGACCACCTCTCTCTCTGAGGATGGGGAGGCG
GCGGACGAGCTGAATGTGGCTGTGCCTCAGCTACGGATGGCGGTGATGGA
AGCCATCGGGGAATTGCAATTGGAATTAGATAATGCCTATGGGGAGATAT
GCGAGCTGGCACTGGAACATATTCATGCGAACGAGGTGATCTTGACGGTT
GGGAGGTCGAGGACGGTGGAGAAATTTTTGAAAGAAGCGGCGGAGAGACG
GAGGATATTCGAGGTGATTGTTGCCGAGTCCGCCCCAACGCTCGCGGGCA
GGGAGATGGCCAAGAGCTTGGCGGCGGGCGGGATTGAAACGACGGTGATA
AGCGACTGTGCAGTTTATGCGATCATGGCCCGAGTGAATCAGGTGTTGTT
GCCTTGTCGAGCGATGATAGCGAATGGAGGGTTAATTGCTCCGTGTGGGG
GGCATATGGCGGCGTTGGCAGCCAAGGAGCTGTCGGTCCCGGTGGTGTGT
GTGACGGGCTTGTTCAAGCTGAGTCCGGTTTACCGACATGACCAGGATGC
GTTCAATGATTTGAAGTCGCCCAGTTCCTTGATACCATACCCAGAGGCTG
CAGCAATGGCGGAGGGAACGGTGGACATTCTGAACCCGGCCTATGATTAT
GTGCCACCGGAGTTGGTCGATTTGTACATTACCAATACGGGGGGACATCA
AACGAGCTATGTCTATCGGTTGTTGGGGGAGTATTATCACCATGATGACT
CGAATTTGGATTAGATTAGATTGGAGAGCACGTAAACCACTTGTTCACAA
AGAAGCAACGCGAGA back to topprotein sequence of NO11G01510.2 >NO11G01510.2-protein ID=NO11G01510.2-protein|Name=NO11G01510.2|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MGSHYFPPYPPVSLSAPPLRQETMPGTPPHGISSKPNLIPLHVFLLTNIR
HLEHRTLNNTHRTVMGTCRWSTAAELMRIVKRVGKALIDAQPLELVIGNI
VRRILFLIRDEHANKLREDRARHGLATTSLSEDGEAADELNVAVPQLRMA
VMEAIGELQLELDNAYGEICELALEHIHANEVILTVGRSRTVEKFLKEAA
ERRRIFEVIVAESAPTLAGREMAKSLAAGGIETTVISDCAVYAIMARVNQ
VLLPCRAMIANGGLIAPCGGHMAALAAKELSVPVVCVTGLFKLSPVYRHD
QDAFNDLKSPSSLIPYPEAAAMAEGTVDILNPAYDYVPPELVDLYITNTG
GHQTSYVYRLLGEYYHHDDSNLD* back to topmRNA from alignment at chr11:507358..509833- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01510.2 ID=NO11G01510.2|Name=NO11G01510.2|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at chr11:507358..509833- (Nannochloropsis oceanica)
TGCACAGGTTGTTTGTATCCTGATCGCTCATTCGTCATGATATTAATTGC
TAACTCACATATGCACATTCTTAGCGGAACGAAGCTACGAATCATCATCC
AGTCGAGCATACGCTTGACTCTCCGCCTCTGACGGCGACTACTTCTCCCC
CGCCAATATCGCTGATGACGATAGTAGCACGAGGTCCGCCGGCTTGAACA
GCCGCCGGACCCACCAGGAGTTCGGGCACCATGCCCCACGTAGACGGCCC
GTTCGTAGGTCAAAACGAGTACCGAAGACAGGGTCCTGCACTGACAAAAT
TGCCGGATCCACTTCCGCGTGTAACAAGGAGTGGTTAGTGGGTGGGCAGG
TATCTTGTAGCACGAAGGTGCGACCATCTGCGATGCTGATGGTGATTGTG
GCCCGATCGCTTTGAGTGAGAGCGTGCCTCGTCAAACGGTAGAAGGGAGT
GGCCTGGAGAGCCATGCAGGCAGAGGCGTGGGGAACATTTGCAAGCAGGA
TAGGACATGGCATAAATGCCCTTGCAATAACCACCAGCTCGAGGAGTAGG
AGCAGGAGCAGCTTTGGGATGCAGCGCTGAAGTCTAGCTGCTGCCATTAG
AGGTCCAACATTTGGCAGCGCAGCGTCAGACATGGGTTGACGACGGGTCT
GTCAGTGCTTCTGATCAGGAGTGTTGTCGGAATTGTTGTTGTTAATTTTG
TTAAGGTCATTGTTGTAAGCACGCGAGGTACCTAGAGTACAAGTGATGCC
TCGCCTTCGGCCTCTCCTTCAGGCGGCGATTCTCAGACCTCTCCTCCTCC
CACCAGTACCAATCACCCACCCATCCCGTCCCACACCCCACCATAGACTG
GCAGGAGCGATGGACTCATCAGTCACGCCCCCTAAAAAAGATCTCGACAC
TTGGTTGTCCACGTGGCCGAACGTGCATGGCCAATTTCGCTTTCTCGTCA
CGAGGTGAGAAGAGGTTTGCAATGAAGGAGGGGAGGCGGGATAGACTTGC
CTTACCAGCATATACTCATGCCCCCGCCCCCGTACACATGCACCCCATAC
CGGTGGCGATGATAGATTGCAGCGGCGCAAGGTGGTAGGCTCCCTACAAT
GCGCCAAGATGACGATCGAATTGCTCAAGTAAGTGGTGCAAGGGGTGGGA
AGGGAAGAAGCTGGCGTAGTAAATGAGGCCGGCAGCCGAAGTCTTGCCGC
CAAGTGCTCCGCTTCGAACTCCTCATCCTCACCATGAACAAGGCTGGTTA
TGAGCAAGTGCACGCCCTGTCACCCACCACCGCTTGCAATGCCTGCTTGA
CACATGGGCTCGCATTACTTCCCTCCTTACCCCCCCGTCTCATTATCCGC
CCCGCCCCTGAGACAAGAAACGATGCCTGGCACTCCTCCGCACGGAATAT
CCTCAAAACCTAACTTAATACCCCTTCATGTTTTTTTGCTAACTAACATT
CGCCATCTCGAACACCGAACTCTAAATAATACACATAGGACCGTGATGGG
CACCTGCCGATGGTCAACCGCCGCGGAGCTCATGCGCATCGTCAAACGTG
TGGGTAAAGCCCTCATCGACGCCCAGCCTCTTGAACTTGTTATTGGAAAC
ATTGTCCGTCGTATCCTTTTTCTCATCCGAGACGAGCATGCCAACAAATT
ACGGGAGGATCGGGCGCGACATGGTTTAGCGACCACCTCTCTCTCTGAGG
ATGGGGAGGCGGCGGACGAGCTGAATGTGGCTGTGCCTCAGCTACGGATG
GCGGTGATGGAAGCCATCGGGGAATTGCAATTGGAATTAGATAATGCCTA
TGGGGAGATATGCGAGCTGGCACTGGAACATATTCATGCGAACGAGGTGA
TCTTGACGGTTGGGAGGTCGAGGACGGTGGAGAAATTTTTGAAAGAAGCG
GCGGAGAGACGGAGGATATTCGAGGTGATTGTTGCCGAGTCCGCCCCAAC
GCTCGCGGGCAGGGAGATGGCCAAGAGCTTGGCGGCGGGCGGGATTGAAA
CGACGGTGATAAGCGACTGTGCAGTTTATGCGATCATGGCCCGAGTGAAT
CAGGTGTTGTTGCCTTGTCGAGCGATGATAGCGAATGGAGGGTTAATTGC
TCCGTGTGGGGGGCATATGGCGGCGTTGGCAGCCAAGGAGCTGTCGGTCC
CGGTGGTGTGTGTGACGGGCTTGTTCAAGCTGAGTCCGGTTTACCGACAT
GACCAGGATGCGTTCAATGATTTGAAGTCGCCCAGTTCCTTGATACCATA
CCCAGAGGCTGCAGCAATGGCGGAGGGAACGGTGGACATTCTGAACCCGG
CCTATGATTATGTGCCACCGGAGTTGGTCGATTTGTACATTACCAATACG
GGGGGACATCAAACGAGCTATGTCTATCGGTTGTTGGGGGAGTATTATCA
CCATGATGACTCGAATTTGGATTAGATTAGATTGGAGAGCACGTAAACCA
CTTGTTCACAAAGAAGCAACGCGAGA back to topCoding sequence (CDS) from alignment at chr11:507358..509833- >NO11G01510.2 ID=NO11G01510.2|Name=NO11G01510.2|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr11:507358..509833- (Nannochloropsis oceanica)
ATGGGCTCGCATTACTTCCCTCCTTACCCCCCCGTCTCATTATCCGCCCC
GCCCCTGAGACAAGAAACGATGCCTGGCACTCCTCCGCACGGAATATCCT
CAAAACCTAACTTAATACCCCTTCATGTTTTTTTGCTAACTAACATTCGC
CATCTCGAACACCGAACTCTAAATAATACACATAGGACCGTGATGGGCAC
CTGCCGATGGTCAACCGCCGCGGAGCTCATGCGCATCGTCAAACGTGTGG
GTAAAGCCCTCATCGACGCCCAGCCTCTTGAACTTGTTATTGGAAACATT
GTCCGTCGTATCCTTTTTCTCATCCGAGACGAGCATGCCAACAAATTACG
GGAGGATCGGGCGCGACATGGTTTAGCGACCACCTCTCTCTCTGAGGATG
GGGAGGCGGCGGACGAGCTGAATGTGGCTGTGCCTCAGCTACGGATGGCG
GTGATGGAAGCCATCGGGGAATTGCAATTGGAATTAGATAATGCCTATGG
GGAGATATGCGAGCTGGCACTGGAACATATTCATGCGAACGAGGTGATCT
TGACGGTTGGGAGGTCGAGGACGGTGGAGAAATTTTTGAAAGAAGCGGCG
GAGAGACGGAGGATATTCGAGGTGATTGTTGCCGAGTCCGCCCCAACGCT
CGCGGGCAGGGAGATGGCCAAGAGCTTGGCGGCGGGCGGGATTGAAACGA
CGGTGATAAGCGACTGTGCAGTTTATGCGATCATGGCCCGAGTGAATCAG
GTGTTGTTGCCTTGTCGAGCGATGATAGCGAATGGAGGGTTAATTGCTCC
GTGTGGGGGGCATATGGCGGCGTTGGCAGCCAAGGAGCTGTCGGTCCCGG
TGGTGTGTGTGACGGGCTTGTTCAAGCTGAGTCCGGTTTACCGACATGAC
CAGGATGCGTTCAATGATTTGAAGTCGCCCAGTTCCTTGATACCATACCC
AGAGGCTGCAGCAATGGCGGAGGGAACGGTGGACATTCTGAACCCGGCCT
ATGATTATGTGCCACCGGAGTTGGTCGATTTGTACATTACCAATACGGGG
GGACATCAAACGAGCTATGTCTATCGGTTGTTGGGGGAGTATTATCACCA
TGATGACTCGAATTTGGATTAG back to top
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