NO11G01430.1, NO11G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01430.1
Unique NameNO11G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length797
Alignment locationchr11:485797..486723 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:485797..486723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01430.1 vs.
Match: EWM25062.1 (protein binding protein [Nannochloropsis gaditana])

HSP 1 Score: 327.0 bits (837), Expect = 4.800e-86
Identity = 171/237 (72.15%), Postives = 202/237 (85.23%), Query Frame = 0 
Query:    1 MPAAELKWGAGLIAFSPISSLFLLVVTKRPELVIISIIGAFAYLVALLLSSALWAVLGPGKQFAALTVVMGVICQALMRACLYKLYHKTEILIKSANHPFLHMPLNDVTSSLSAGTGYAVMHCVMLFGSVLASGSSDPGVLYAPSCRGSPLVLVLAFLALAFTLLDLCFMALTFLYMRRRMIRRMVVMLGLHLVASGVTISNKMDNGCTVSLPLVYGVVAAALLTTVREWRELREDT 238
            M AA L WGAGLI FSPIS +F+LVVT+RPELVII+I GAFAYLVALLLSSALWA+ GP KQ AA+ VV+GV+CQ +MRA LY+LYH+TEILIKSANHP LHMPLND+TSSL+AGTGY +MH VM+FGSVLASG+SDPGVL+APSC  +PLV+VLA LALAFT++DL FMALTFLY+RRR   RM V+  +H  ASG+TI N ++NGCT+SLPLVY V+ A +L T REWR+L EDT
Sbjct:    1 MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLVTFREWRQLNEDT 237
The following BLAST results are available for this feature:
BLAST of NO11G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25062.14.800e-8672.15protein binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01430NO11G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01430.1NO11G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01430.1.cds1NO11G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01430.1.cds2NO11G01430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01430.1 ID=NO11G01430.1|Name=NO11G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=797bp
ACAGCCCAAGCCCACTATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTC
TGATCGCCTTCTCCCCCATTTCCTCACTCTTTCTCCTCGTCGTCACCAAG
CGGCCGGAGCTTGTCATCATCAGCATCATCGGAGCCTTTGCCTACCTCGT
CGCCTTGCTCTTGTCATCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGC
AATTCGCTGCACTGACGGTGGTGATGGGTGTGATATGCCAAGCCTTGATG
AGGGCATGCCTCTACAAACTCTACCACAAAACGGAAATTTTGATCAAGTC
TGCCAACCACCCCTTCCTCCACATGCCGTTAAACGACGTGACTTCTTCCT
TGTCAGCAGGCACGGGTTATGCGGTCATGCATTGCGTCATGCTATTTGGG
AGTGTCCTTGCCTCTGGCTCGTCAGACCCCGGCGTGTTGTACGCACCATC
CTGCCGGGGAAGCCCCTTGGTGCTGGTCCTGGCATTCCTAGCACTGGCAT
TCACGTTGCTCGACCTTTGCTTCATGGCCTTGACATTTTTGTACATGCGC
CGACGGATGATACGACGAATGGTCGTTATGTTGGGGTTGCATTTGGTGGC
GAGTGGTGTGACGATCTCCAACAAGATGGACAATGGCTGCACGGTCTCTT
TGCCTCTTGTCTATGGCGTGGTGGCCGCTGCTCTTCTAACTACCGTGCGG
GAATGGAGGGAGCTGCGCGAAGATACCTAGAGAAGTTATGACAGATGAAC
AAAGGCATATACCCAAATGAAAGAAAAAATGTCTGATGTAAATGGAA
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protein sequence of NO11G01430.1

>NO11G01430.1-protein ID=NO11G01430.1-protein|Name=NO11G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MPAAELKWGAGLIAFSPISSLFLLVVTKRPELVIISIIGAFAYLVALLLS
SALWAVLGPGKQFAALTVVMGVICQALMRACLYKLYHKTEILIKSANHPF
LHMPLNDVTSSLSAGTGYAVMHCVMLFGSVLASGSSDPGVLYAPSCRGSP
LVLVLAFLALAFTLLDLCFMALTFLYMRRRMIRRMVVMLGLHLVASGVTI
SNKMDNGCTVSLPLVYGVVAAALLTTVREWRELREDT*
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mRNA from alignment at chr11:485797..486723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01430.1 ID=NO11G01430.1|Name=NO11G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=927bp|location=Sequence derived from alignment at chr11:485797..486723+ (Nannochloropsis oceanica)
ACAGCCCAAGCCCACTATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTC
TGATCGCCTTCTCCCCCATTTCCTCACTCTTTCTCCTCGTCGTCACCAAG
CGGCCGGAGCTTGTCATCATCAGCATCATCGGAGCCTTTGCCTACCTCGT
CGCCTTGCTCTTGTCATCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGC
AATTCGCTGCACTGACGGTGGTGATGGGTGTGATATGCCAAGCCTTGATG
AGGGCATGCCTCTACAAACTCTACCACAAAACGGAAATTTTGATCAAGTC
TGCCAACCACCCCTTCCTCCACATGCCGTTAAACGACGTGACTTCTTCCT
TGTCAGCAGGCACGGGTTATGCGGTCATGCATTGCGTCATGCTATTTGGG
AGTGTCCTTGCCTCTGGCTCGTCAGACCCCGGCGTGTTGTACGCACCATC
CTGCCGGGGAAGCCCCTTGGTGCTGGTCCTGGCATTCCTAGCACTGGCAT
TCACGTTGCTCGACCTTTGCTTCATGGCCTTGACATTTTTGTACATGCGC
CGACGGATGATACGACGAATGGTCGTTATGTTGGGGTTGCATTTGGTGGC
GAGTGGTGTGGTAAGTATGCTGGGGAGGGAAGAGAGGTGGGTTATGGAAG
TGACTGCCCGAGAGAGTGCATTCCCTACGCATTTCGATATCACACCAACC
GATGTTTTTCCTCATTCCATTCTCTTTTCGGTACTTTAAGACGATCTCCA
ACAAGATGGACAATGGCTGCACGGTCTCTTTGCCTCTTGTCTATGGCGTG
GTGGCCGCTGCTCTTCTAACTACCGTGCGGGAATGGAGGGAGCTGCGCGA
AGATACCTAGAGAAGTTATGACAGATGAACAAAGGCATATACCCAAATGA
AAGAAAAAATGTCTGATGTAAATGGAA
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Coding sequence (CDS) from alignment at chr11:485797..486723+

>NO11G01430.1 ID=NO11G01430.1|Name=NO11G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr11:485797..486723+ (Nannochloropsis oceanica)
ATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTCTGATCGCCTTCTCCCC
CATTTCCTCACTCTTTCTCCTCGTCGTCACCAAGCGGCCGGAGCTTGTCA
TCATCAGCATCATCGGAGCCTTTGCCTACCTCGTCGCCTTGCTCTTGTCA
TCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGCAATTCGCTGCACTGAC
GGTGGTGATGGGTGTGATATGCCAAGCCTTGATGAGGGCATGCCTCTACA
AACTCTACCACAAAACGGAAATTTTGATCAAGTCTGCCAACCACCCCTTC
CTCCACATGCCGTTAAACGACGTGACTTCTTCCTTGTCAGCAGGCACGGG
TTATGCGGTCATGCATTGCGTCATGCTATTTGGGAGTGTCCTTGCCTCTG
GCTCGTCAGACCCCGGCGTGTTGTACGCACCATCCTGCCGGGGAAGCCCC
TTGGTGCTGGTCCTGGCATTCCTAGCACTGGCATTCACGTTGCTCGACCT
TTGCTTCATGGCCTTGACATTTTTGTACATGCGCCGACGGATGATACGAC
GAATGGTCGTTATGTTGGGGTTGCATTTGGTGGCGAGTGGTGTGACGATC
TCCAACAAGATGGACAATGGCTGCACGGTCTCTTTGCCTCTTGTCTATGG
CGTGGTGGCCGCTGCTCTTCTAACTACCGTGCGGGAATGGAGGGAGCTGC
GCGAAGATACCTAG
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Synonyms
Publications