NO11G01390.1, NO11G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01390.1
Unique NameNO11G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1296
Alignment locationchr11:478168..479979 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:478168..479979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01390.1 vs.
Match: EWM25073.1 (cell division protein [Nannochloropsis gaditana])

HSP 1 Score: 506.1 bits (1302), Expect = 7.700e-140
Identity = 235/285 (82.46%), Postives = 262/285 (91.93%), Query Frame = 0 
Query:    1 MTDNKEARNRQIPIVCPGHSRPLAGVEYSPVTPDGVFLISACHDKEPMLRNGKTGDWIGTFKGHKGAVWSAKLNKDATFALTGSGDFSAKVWDAITGAELHTFAHKHIVKTVEFSPDSRKFVSGGHEGKLRLFDLVEPEAPAVVIDLPPPSSGGTTSITKVIWDRTDSNRVITGTSDGKVRAWDLRSRQEIHSAEVQGTVMDLELSPTVGDILTICAGDKVTFLDASSLLPLKSFQMPMHFREEGGASLHPDRQLFIAGGSDLWVRVFDFNTGAELECHKGHHGP 286
            M +NKE+RNRQIPIVCPGHSRPLAGVEYSPVTPDGVFLISACHDKEPMLRNG+TGDWIGTFKGHKGAVWSAKLNKDATFALTGSGDFSA+VWDAITGAEL  F HKHIV+TVEF+PDSR+FVSGG+EGKLR++DL+EP AP + +DL  P SG  T+ +K +WD++D  RV+TG+SDGKVRAWDLR+R+E   AEVQG VMDLELSP VGDILT+CAGDKVTFLD ++LLP+KSF MPMHFREEGGASLHPDRQLFIAGGSDLWVRVFD+NTGAELECHKGHHGP
Sbjct:    1 MAENKESRNRQIPIVCPGHSRPLAGVEYSPVTPDGVFLISACHDKEPMLRNGETGDWIGTFKGHKGAVWSAKLNKDATFALTGSGDFSARVWDAITGAELEHFPHKHIVRTVEFAPDSRRFVSGGNEGKLRVYDLMEPSAPPMTMDL--PKSG--TTFSKAVWDQSDPQRVLTGSSDGKVRAWDLRARKETQVAEVQGNVMDLELSPKVGDILTVCAGDKVTFLDTATLLPIKSFPMPMHFREEGGASLHPDRQLFIAGGSDLWVRVFDYNTGAELECHKGHHGP 281
The following BLAST results are available for this feature:
BLAST of NO11G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25073.17.700e-14082.46cell division protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01390NO11G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01390.1NO11G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01390.1.cds1NO11G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01390.1.cds2NO11G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01390.1.cds3NO11G01390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01390.1.cds4NO11G01390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01390.1 ID=NO11G01390.1|Name=NO11G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
CAGGTTTCGGTCTTCGACTACCAAGCAAAATCGTACAGGCAACACCAGCG
ACTTCCATCACAGGTGTGGCAAAGCAAGTGGACTGAAGGGGGAGGAGACT
GAAGAAAGGAGCACCAACAGTTGCGGTACCAGCAACAAGAGGAGCAATAA
TCCATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCTATAGTCTG
CCCCGGTCACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGACGC
CCGACGGGGTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGTTG
CGAAATGGAAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAAGG
CGCGGTTTGGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGACGG
GCTCGGGGGACTTCAGCGCCAAAGTCTGGGACGCCATCACCGGCGCCGAG
CTTCACACTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTTTTCGCC
TGACTCCCGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGCGTTTGT
TCGATTTGGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTGCCCCCT
CCCTCCTCCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGACCGCAC
AGATAGCAACAGGGTCATCACAGGCACGAGTGATGGGAAGGTACGGGCGT
GGGATTTGAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAAGGAACC
GTGATGGACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTTACCATCTG
CGCCGGCGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCTCCCCCTCA
AGTCCTTCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTGCATCCCTG
CATCCCGATCGCCAACTCTTTATTGCTGGAGGATCCGATTTGTGGGTGCG
GGTCTTCGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAAAGGCCATC
ATGGCCCAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGAGTTACGCG
ACGGGGAGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAGGTGGATGC
ATAGCGATTCTGCGCTTCTGGTGGGGAGGTTGTGACCTTCCCACTTCCTC
CTTCTCCAAACATTCGTTTCTATGTTGTAAAAGCATGGCAAGCATAACAA
TACATAAAGTGCTGTTCGCTCCAATCTAAGATTAGGTCGAAAAAGAAATG
AGACAATTGCGACGCATTCCAAAAAATAAAACATTTTCGACACCAA
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protein sequence of NO11G01390.1

>NO11G01390.1-protein ID=NO11G01390.1-protein|Name=NO11G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MTDNKEARNRQIPIVCPGHSRPLAGVEYSPVTPDGVFLISACHDKEPMLR
NGKTGDWIGTFKGHKGAVWSAKLNKDATFALTGSGDFSAKVWDAITGAEL
HTFAHKHIVKTVEFSPDSRKFVSGGHEGKLRLFDLVEPEAPAVVIDLPPP
SSGGTTSITKVIWDRTDSNRVITGTSDGKVRAWDLRSRQEIHSAEVQGTV
MDLELSPTVGDILTICAGDKVTFLDASSLLPLKSFQMPMHFREEGGASLH
PDRQLFIAGGSDLWVRVFDFNTGAELECHKGHHGPVRCLRYAPEGGSYAT
GSEDGTVRIWATQVDA*
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mRNA from alignment at chr11:478168..479979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01390.1 ID=NO11G01390.1|Name=NO11G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr11:478168..479979- (Nannochloropsis oceanica)
CAGGTTTCGGTCTTCGACTACCAAGCAAAATCGTACAGGCAACACCAGCG
ACTTCCATCACAGGTGTGGCAAAGCAAGTGGACTGAAGGGGGAGGAGACT
GAAGAAAGGAGCACCAACAGTTGCGGTACCAGCAACAAGAGGAGCAATAA
TCCATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCTATAGGTAA
GAGCTCTATTGGTTTTAGAGAGAGAGAAGTTGAAAGGCATTTCATCCGGC
TAGGGGAATGGCATCCGGCTCGGGGATGAAAGACCGCGGAGACCTCGTGC
GAGATATGAGTGAAGGCCGCTTGACAAAAAAAGCGTTAAGTGAGGACACC
AGGTGCGCTTTATGGTCTTCGGGAGTCTGATTTGCCCTTTGACCCTTCCC
AATCACTTGCTTTTTTTAAAGTCTGCCCCGGTCACAGCCGGCCTTTGGCA
GGTGTGGAATATAGCCCGGTGACGCCCGACGGGGTCTTCCTCATTAGCGC
TTGTCATGATAAAGAGCCCATGTTGCGAAATGGAAAGACCGGGGATTGGA
TCGGAACTTTTAAGGGGCACAAAGGCGCGGTTTGGAGCGCCAAGTTGAAT
AAGGACGCAACATTTGCCCTGACGGGCTCGGGGGACTTCAGGTGCGTGAG
AGGGAGAAGGAGGAGGAAGGAAGAAGGGAGGTTTGGACCAGGATTCTACC
TTATTTCCACATCTGGCCCACGCATATGTATACACGTTGCCCACCCGCTC
TCCCTCCTCCCCCCCTCGCCACCTCCTCGCTACCTCCCCTCCAGCGCCAA
AGTCTGGGACGCCATCACCGGCGCCGAGCTTCACACTTTCGCGCACAAAC
ACATCGTGAAGACCGTGGAGTTTTCGCCTGACTCCCGGAAATTTGTCTCT
GGTGGACACGAGGGAAAATTGCGTTTGTTCGATTTGGTGGAGCCCGAGGC
GCCGGCTGTGGTGATTGACCTGCCCCCTCCCTCCTCCGGTGGCACCACGT
CAATCACGAAAGTCATTTGGGACCGCACAGATAGCAACAGGGTCATCACA
GGCACGAGTGATGGGAAGGTACGGGCGTGGGATTTGAGGAGCAGGCAGGA
GATCCACTCGGCGGAGGTGCAAGGTGAGAAGGCGGCGGAGGGAAGTAGGA
TGGAAAGAAGATGGGAGGGGGGATGGCTGTCGTCAACAAATGCTCTGCTC
GTGTTTCCCACACTTACGTCTTTCATTCTTTTTCGTCCTTTCATTGACGT
CTACAAAATAGGAACCGTGATGGACCTGGAGCTCTCTCCTACAGTTGGCG
ATATTCTTACCATCTGCGCCGGCGACAAGGTGACCTTCCTCGACGCCTCC
TCACTCCTCCCCCTCAAGTCCTTCCAAATGCCCATGCACTTCCGGGAAGA
AGGCGGTGCATCCCTGCATCCCGATCGCCAACTCTTTATTGCTGGAGGAT
CCGATTTGTGGGTGCGGGTCTTCGATTTTAATACCGGCGCGGAGCTTGAG
TGTCATAAAGGCCATCATGGCCCAGTACGATGTCTGCGGTATGCACCTGA
AGGTGGGAGTTACGCGACGGGGAGTGAGGATGGAACGGTTCGTATCTGGG
CGACGCAGGTGGATGCATAGCGATTCTGCGCTTCTGGTGGGGAGGTTGTG
ACCTTCCCACTTCCTCCTTCTCCAAACATTCGTTTCTATGTTGTAAAAGC
ATGGCAAGCATAACAATACATAAAGTGCTGTTCGCTCCAATCTAAGATTA
GGTCGAAAAAGAAATGAGACAATTGCGACGCATTCCAAAAAATAAAACAT
TTTCGACACCAA
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Coding sequence (CDS) from alignment at chr11:478168..479979-

>NO11G01390.1 ID=NO11G01390.1|Name=NO11G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr11:478168..479979- (Nannochloropsis oceanica)
ATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCTATAGTCTGCCC
CGGTCACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGACGCCCG
ACGGGGTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGTTGCGA
AATGGAAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAAGGCGC
GGTTTGGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGACGGGCT
CGGGGGACTTCAGCGCCAAAGTCTGGGACGCCATCACCGGCGCCGAGCTT
CACACTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTTTTCGCCTGA
CTCCCGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGCGTTTGTTCG
ATTTGGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTGCCCCCTCCC
TCCTCCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGACCGCACAGA
TAGCAACAGGGTCATCACAGGCACGAGTGATGGGAAGGTACGGGCGTGGG
ATTTGAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAAGGAACCGTG
ATGGACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTTACCATCTGCGC
CGGCGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCTCCCCCTCAAGT
CCTTCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTGCATCCCTGCAT
CCCGATCGCCAACTCTTTATTGCTGGAGGATCCGATTTGTGGGTGCGGGT
CTTCGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAAAGGCCATCATG
GCCCAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGAGTTACGCGACG
GGGAGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAGGTGGATGCATA
G
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Synonyms
Publications