NO11G01260.1, NO11G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01260.1
Unique NameNO11G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1505
Alignment locationchr11:439579..441175 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:439579..441175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01260.1 vs.
Match: EWM25120.1 (u5 small nuclear ribonucleoprotein 40 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 572.8 bits (1475), Expect = 7.500e-160
Identity = 286/356 (80.34%), Postives = 314/356 (88.20%), Query Frame = 0 
Query:    1 MEEGSETK-RVGGADEGALVSVPQSSEALALTCAP-APGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYNVLTGHTNAVLDLKWSRDSTMIASASADKTLMIWDTNKGTRLRKCTEHTSCVNSVAAAGGKASTGSVATLFATASDDKTVKLWDTRSRRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETVTGLSLSPDGKYLLSNAMDNTLRQWDVRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGELAG 355
            M+EG E + R  GAD+ AL +VP+SS  LA++ AP APGRTSHLAASTMLLTGHAAAVYCLQFNP GDALA+GSFDK+ILLWD+Y E+CKNYNVL GHTNAVLDLKWS + + IASASADKTLM+WD+NKGTR+RKC EHT CVNSVA AG K     VA L ATASDD+TVKLWD RSRR+V+T+EHRFQLLAVALSADGKKV+AGG+DN+I +WD++K G  P DV EGHSETVTGLSLSPDGKYLLSNAMDNT+RQWDVRPFVTG R VQVFQG  HGSDRNLLRCAWS DGEMVSAGS DRAVHVWDVPSGQELYYLPGHKGTVNEVVFHP EPVIASASSDKTC+LGELAG
Sbjct:    1 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVY-EDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDK-----VAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAK-GPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 349
The following BLAST results are available for this feature:
BLAST of NO11G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25120.17.500e-16080.34u5 small nuclear ribonucleoprotein 40 kda protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01260NO11G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01260.1NO11G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01260.1.cds1NO11G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01260.1.cds2NO11G01260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01260.1 ID=NO11G01260.1|Name=NO11G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
AAAATCAATTAAAAAAAAAAAAGTGCTTTCTTTTGTGCTTTCAGCTCGCG
GGTCATGGCAAAGGCGGCTGAGGAATAATGTGAGTGAGGGCAACACAATG
CCTAGCGTGCTGCCCCTTGCTTGGTTTTCTCACCCACGCCTAGCGGCCTT
CGTTTACCCACTCTGTATATCAGTGTTACCCTGCCAAAACATTCATCACC
ACTGTAAGCTTTGCCTGAACGCCTATGAGTTGGTCCTGGAAATGTGCCGG
ACGGGGCTGCGCGATTCCCTTCTCCTCCCGCCCTCCTTCCGAATCATCGT
CACGTTGACCTTCATTCTCGACCCACATCACTATCTACGACAGCGCAGGG
CCTTGAGACATGGAGGAAGGGTCTGAAACCAAGAGGGTGGGCGGCGCCGA
CGAAGGTGCCCTCGTGTCCGTTCCCCAAAGTTCAGAGGCACTTGCCCTGA
CTTGTGCTCCTGCGCCGGGACGGACAAGCCACCTCGCGGCCTCAACCATG
CTCTTGACTGGCCACGCCGCTGCCGTCTACTGCTTGCAATTCAATCCAAC
GGGAGATGCCTTGGCTTCTGGCTCGTTTGATAAGAGCATTTTGTTATGGG
ACATCTACGGCGAGGAATGCAAGAACTACAATGTATTGACCGGCCATACC
AACGCTGTGTTGGACCTCAAGTGGTCACGCGACAGTACCATGATCGCCTC
AGCCTCCGCGGACAAGACCCTCATGATCTGGGACACCAACAAGGGCACGC
GCCTCCGCAAATGCACCGAACACACGAGCTGCGTCAACAGCGTGGCAGCA
GCGGGAGGCAAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGCAACTGC
CAGCGATGACAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGCGGGCGG
TCGAGACGATGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTATCGGCA
GATGGGAAGAAGGTGTACGCAGGAGGACTTGACAATAACATCCTCATGTG
GGACTTAAGCAAAGGTGGGGAGGAACCGGCGGATGTATACGAGGGGCATT
CCGAGACAGTGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTACCTGCTC
TCGAACGCCATGGACAATACGCTTCGACAATGGGATGTACGGCCATTCGT
GACGGGCGCACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACGGTTCGG
ACCGCAACCTCTTGCGGTGTGCCTGGTCATACGATGGAGAGATGGTGTCG
GCAGGTTCGGTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTCGGGGCA
GGAGCTGTATTACTTGCCCGGGCACAAGGGCACGGTTAACGAGGTGGTGT
TCCATCCTAACGAACCCGTGATTGCATCGGCCTCGTCAGATAAAACCTGC
TTCCTGGGGGAGCTGGCTGGGTAGGGTTATGGGATAGATAAAGATGCGAC
ACGTGAAAAAAAGTGAAAACTTAATCTGAAAGTAAGTGATTGTCTCGGAT
GTTGT
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protein sequence of NO11G01260.1

>NO11G01260.1-protein ID=NO11G01260.1-protein|Name=NO11G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MEEGSETKRVGGADEGALVSVPQSSEALALTCAPAPGRTSHLAASTMLLT
GHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYNVLTGHTNAV
LDLKWSRDSTMIASASADKTLMIWDTNKGTRLRKCTEHTSCVNSVAAAGG
KASTGSVATLFATASDDKTVKLWDTRSRRAVETMEHRFQLLAVALSADGK
KVYAGGLDNNILMWDLSKGGEEPADVYEGHSETVTGLSLSPDGKYLLSNA
MDNTLRQWDVRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGS
VDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLG
ELAG*
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mRNA from alignment at chr11:439579..441175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01260.1 ID=NO11G01260.1|Name=NO11G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at chr11:439579..441175+ (Nannochloropsis oceanica)
AAAATCAATTAAAAAAAAAAAAGTGCTTTCTTTTGTGCTTTCAGCTCGCG
GGTCATGGCAAAGGCGGCTGAGGAATAATGTGAGTGAGGGCAACACAATG
CCTAGCGTGCTGCCCCTTGCTTGGTTTTCTCACCCACGCCTAGCGGCCTT
CGTTTACCCACTCTGTATATCAGTGTTACCCTGCCAAAACATTCATCACC
ACTGTAAGCTTTGCCTGAACGCCTATGAGTTGGTCCTGGAAATGTGCCGG
ACGGGGCTGCGCGATTCCCTTCTCCTCCCGCCCTCCTTCCGAATCATCGT
CACGTTGACCTTCATTCTCGACCCACATCACTATCTACGACAGCGCAGGG
CCTTGAGACATGGAGGAAGGGTCTGAAACCAAGAGGGTGGGCGGCGCCGA
CGAAGGTGCCCTCGTGTCCGTTCCCCAAAGTTCAGAGGCACTTGCCCTGA
CTTGTGCTCCTGCGCCGGGACGGACAAGCCACCTCGCGGCCTCAACCATG
CTCTTGACTGGCCACGCCGCTGCCGTCTACTGCTTGCAATTCAATCCAAC
GGGAGATGCCTTGGCTTCTGGCTCGTTTGATAAGAGCATTTTGTTATGGG
ACATCTACGGCGAGGTAAATCTATATACGTCTGTTCCTTCTCACATTAAT
ACTCCTACTACGCTCGCTATCGGCTTTGCCTCATTCTTCCCAAACCAATT
GCATAGGAATGCAAGAACTACAATGTATTGACCGGCCATACCAACGCTGT
GTTGGACCTCAAGTGGTCACGCGACAGTACCATGATCGCCTCAGCCTCCG
CGGACAAGACCCTCATGATCTGGGACACCAACAAGGGCACGCGCCTCCGC
AAATGCACCGAACACACGAGCTGCGTCAACAGCGTGGCAGCAGCGGGAGG
CAAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGCAACTGCCAGCGATG
ACAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGCGGGCGGTCGAGACG
ATGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTATCGGCAGATGGGAA
GAAGGTGTACGCAGGAGGACTTGACAATAACATCCTCATGTGGGACTTAA
GCAAAGGTGGGGAGGAACCGGCGGATGTATACGAGGGGCATTCCGAGACA
GTGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTACCTGCTCTCGAACGC
CATGGACAATACGCTTCGACAATGGGATGTACGGCCATTCGTGACGGGCG
CACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACGGTTCGGACCGCAAC
CTCTTGCGGTGTGCCTGGTCATACGATGGAGAGATGGTGTCGGCAGGTTC
GGTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTCGGGGCAGGAGCTGT
ATTACTTGCCCGGGCACAAGGGCACGGTTAACGAGGTGGTGTTCCATCCT
AACGAACCCGTGATTGCATCGGCCTCGTCAGATAAAACCTGCTTCCTGGG
GGAGCTGGCTGGGTAGGGTTATGGGATAGATAAAGATGCGACACGTGAAA
AAAAGTGAAAACTTAATCTGAAAGTAAGTGATTGTCTCGGATGTTGT
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Coding sequence (CDS) from alignment at chr11:439579..441175+

>NO11G01260.1 ID=NO11G01260.1|Name=NO11G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr11:439579..441175+ (Nannochloropsis oceanica)
ATGGAGGAAGGGTCTGAAACCAAGAGGGTGGGCGGCGCCGACGAAGGTGC
CCTCGTGTCCGTTCCCCAAAGTTCAGAGGCACTTGCCCTGACTTGTGCTC
CTGCGCCGGGACGGACAAGCCACCTCGCGGCCTCAACCATGCTCTTGACT
GGCCACGCCGCTGCCGTCTACTGCTTGCAATTCAATCCAACGGGAGATGC
CTTGGCTTCTGGCTCGTTTGATAAGAGCATTTTGTTATGGGACATCTACG
GCGAGGAATGCAAGAACTACAATGTATTGACCGGCCATACCAACGCTGTG
TTGGACCTCAAGTGGTCACGCGACAGTACCATGATCGCCTCAGCCTCCGC
GGACAAGACCCTCATGATCTGGGACACCAACAAGGGCACGCGCCTCCGCA
AATGCACCGAACACACGAGCTGCGTCAACAGCGTGGCAGCAGCGGGAGGC
AAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGCAACTGCCAGCGATGA
CAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGCGGGCGGTCGAGACGA
TGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTATCGGCAGATGGGAAG
AAGGTGTACGCAGGAGGACTTGACAATAACATCCTCATGTGGGACTTAAG
CAAAGGTGGGGAGGAACCGGCGGATGTATACGAGGGGCATTCCGAGACAG
TGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTACCTGCTCTCGAACGCC
ATGGACAATACGCTTCGACAATGGGATGTACGGCCATTCGTGACGGGCGC
ACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACGGTTCGGACCGCAACC
TCTTGCGGTGTGCCTGGTCATACGATGGAGAGATGGTGTCGGCAGGTTCG
GTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTCGGGGCAGGAGCTGTA
TTACTTGCCCGGGCACAAGGGCACGGTTAACGAGGTGGTGTTCCATCCTA
ACGAACCCGTGATTGCATCGGCCTCGTCAGATAAAACCTGCTTCCTGGGG
GAGCTGGCTGGGTAG
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Synonyms
Publications