NO11G00940.1, NO11G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00940.1
Unique NameNO11G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1287
Alignment locationchr11:361886..363172 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:361886..363172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00940.1 vs.
Match: XP_005856278.1 (calreticulin, partial [Nannochloropsis gaditana CCMP526]; EKU20058.1 calreticulin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 697.2 bits (1798), Expect = 3.200e-197
Identity = 339/435 (77.93%), Postives = 382/435 (87.82%), Query Frame = 0 
Query:    1 MAGRGLLTVGMLAATASATVYFKENFDDKWETRWVVPSKWKSAEEMGKWVLTAGDWFGDANDKGIKTTEDARFYGLSAKLAKPFSNEGKDLVLQFTVKHEQRLDCGGAYIKLLGPKLDQASFGGDSPYQIMFGPDICGSTQRTHVIFNYPQVKSEEKNLLIKQDVPTRTDQLSHLYTLHLIAANNSFNVLIDGESVRAGALEGAWDFLPPKTIPDPAQSKPADWVDEAMIVDPSDIKPAGWDDIPATVPDAEAVQPEDWDEEEDGAWEAPMVDNPEYMGTWTPRMIDNPAYKGVWEHPQVPNPDYFEDPKLHARAKEVTAVGFELWQVKSGTMFDDIILTDSLDEAKAYAKDTFWAKKEGEKAMFDAAEAVRVEKEKAEREEMMKNAKVNG---EDGESMFSGSDIEIS----EMDEDDEDEDDEDGEITFSDEL 429
            M  RGLL VG+L A+ SATVYF ENFDDKWE+RWVVPSKWK+AEE+G+W  TAG+WFGDA DKGIKT++DARFYGLSAKLAKPFSNEGKDLVLQ+ VKHEQRLDCGGAYIKLLGP+LDQASFGGD+PYQIMFGPD+CGST+RTHVIFNYP+ K E+KNLLIK DVPTRTDQLSHLYTLH++AANNSFNVLIDGESVR G+LE +WDF PPKTIPDP QSKPADWVDE M+ DP+D+KP G+DDIPAT+PD+EAVQPEDWDEEEDG WEAPMVDNP+Y G W+P+MI NP YKG WEHP +PNP+Y  DPKLHARA EVTAVGFELWQVKSGTMFDDIILTDSLDEA  YAK+TFW K+EGEKAMF+ AE  RVEKEKAEREEM K A+ NG   E+G+S FS SD+EI+    E DED EDE++ED E +F+ EL
Sbjct:   14 MISRGLLAVGLLTASTSATVYFTENFDDKWESRWVVPSKWKAAEEIGEWAHTAGEWFGDAADKGIKTSQDARFYGLSAKLAKPFSNEGKDLVLQYVVKHEQRLDCGGAYIKLLGPELDQASFGGDTPYQIMFGPDVCGSTKRTHVIFNYPEAKGEDKNLLIKTDVPTRTDQLSHLYTLHIMAANNSFNVLIDGESVREGSLEESWDFRPPKTIPDPEQSKPADWVDEEMMADPADVKPEGYDDIPATLPDSEAVQPEDWDEEEDGVWEAPMVDNPDYKGPWSPKMIPNPDYKGAWEHPHIPNPEYSPDPKLHARATEVTAVGFELWQVKSGTMFDDIILTDSLDEATEYAKETFWKKQEGEKAMFEKAEEERVEKEKAEREEMKKKAEENGEPFEEGDSPFSVSDMEITEDEDEDDEDWEDEEEEDDENSFTMEL 448
The following BLAST results are available for this feature:
BLAST of NO11G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856278.13.200e-19777.93calreticulin, partial [Nannochloropsis gaditana CC... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00940NO11G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00940.1NO11G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00940.1.cds1NO11G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00940.1 ID=NO11G00940.1|Name=NO11G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
ATGGCCGGACGCGGGTTGCTCACGGTGGGAATGCTGGCCGCCACGGCTTC
GGCCACTGTCTATTTCAAGGAGAACTTCGATGATAAATGGGAGACCCGGT
GGGTTGTGCCCAGCAAATGGAAGTCGGCAGAGGAGATGGGTAAGTGGGTG
CTCACAGCCGGTGACTGGTTTGGGGACGCCAATGACAAGGGGATCAAGAC
CACGGAAGACGCTCGCTTCTACGGCCTCTCGGCCAAGCTGGCCAAACCCT
TCTCGAACGAGGGCAAGGACCTGGTGCTCCAGTTCACCGTCAAGCACGAG
CAGCGCTTGGACTGTGGTGGCGCCTACATCAAATTACTAGGGCCCAAGCT
GGATCAAGCCTCCTTTGGGGGCGATTCGCCCTATCAAATCATGTTCGGTC
CCGATATATGTGGCTCGACGCAGCGCACGCACGTCATCTTCAACTACCCG
CAGGTCAAAAGTGAGGAAAAGAACCTCCTGATCAAACAGGATGTGCCCAC
GCGCACGGATCAGCTCAGTCATCTGTACACGCTGCACCTCATTGCTGCAA
ACAACTCGTTCAACGTCCTCATCGACGGCGAGTCCGTTCGCGCCGGTGCC
CTGGAGGGCGCCTGGGACTTTCTCCCGCCCAAGACCATCCCGGACCCAGC
CCAGAGCAAGCCAGCGGACTGGGTGGACGAGGCGATGATTGTGGATCCGT
CAGATATCAAGCCGGCCGGCTGGGACGACATCCCCGCCACCGTGCCTGAC
GCTGAGGCCGTTCAGCCCGAGGACTGGGACGAGGAGGAGGATGGGGCCTG
GGAGGCGCCCATGGTGGACAACCCCGAGTACATGGGCACCTGGACGCCCA
GGATGATCGACAACCCGGCCTACAAGGGCGTCTGGGAGCACCCGCAAGTG
CCAAACCCCGACTACTTCGAGGACCCCAAGCTGCACGCACGCGCCAAGGA
GGTGACGGCTGTCGGCTTCGAGCTCTGGCAAGTCAAGTCGGGCACCATGT
TCGACGACATCATCCTGACTGACTCACTGGATGAGGCCAAAGCCTATGCG
AAGGATACATTTTGGGCCAAGAAGGAGGGCGAGAAAGCTATGTTCGACGC
GGCCGAGGCGGTGCGCGTGGAGAAAGAGAAGGCTGAGCGCGAAGAGATGA
TGAAGAACGCCAAGGTCAATGGGGAAGATGGTGAGAGCATGTTCTCTGGC
TCCGATATTGAGATCTCCGAGATGGACGAAGACGACGAGGACGAAGACGA
CGAGGACGGGGAGATCACCTTCTCAGACGAGCTCTAG
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protein sequence of NO11G00940.1

>NO11G00940.1-protein ID=NO11G00940.1-protein|Name=NO11G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MAGRGLLTVGMLAATASATVYFKENFDDKWETRWVVPSKWKSAEEMGKWV
LTAGDWFGDANDKGIKTTEDARFYGLSAKLAKPFSNEGKDLVLQFTVKHE
QRLDCGGAYIKLLGPKLDQASFGGDSPYQIMFGPDICGSTQRTHVIFNYP
QVKSEEKNLLIKQDVPTRTDQLSHLYTLHLIAANNSFNVLIDGESVRAGA
LEGAWDFLPPKTIPDPAQSKPADWVDEAMIVDPSDIKPAGWDDIPATVPD
AEAVQPEDWDEEEDGAWEAPMVDNPEYMGTWTPRMIDNPAYKGVWEHPQV
PNPDYFEDPKLHARAKEVTAVGFELWQVKSGTMFDDIILTDSLDEAKAYA
KDTFWAKKEGEKAMFDAAEAVRVEKEKAEREEMMKNAKVNGEDGESMFSG
SDIEISEMDEDDEDEDDEDGEITFSDEL*
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mRNA from alignment at chr11:361886..363172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00940.1 ID=NO11G00940.1|Name=NO11G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at chr11:361886..363172- (Nannochloropsis oceanica)
ATGGCCGGACGCGGGTTGCTCACGGTGGGAATGCTGGCCGCCACGGCTTC
GGCCACTGTCTATTTCAAGGAGAACTTCGATGATAAATGGGAGACCCGGT
GGGTTGTGCCCAGCAAATGGAAGTCGGCAGAGGAGATGGGTAAGTGGGTG
CTCACAGCCGGTGACTGGTTTGGGGACGCCAATGACAAGGGGATCAAGAC
CACGGAAGACGCTCGCTTCTACGGCCTCTCGGCCAAGCTGGCCAAACCCT
TCTCGAACGAGGGCAAGGACCTGGTGCTCCAGTTCACCGTCAAGCACGAG
CAGCGCTTGGACTGTGGTGGCGCCTACATCAAATTACTAGGGCCCAAGCT
GGATCAAGCCTCCTTTGGGGGCGATTCGCCCTATCAAATCATGTTCGGTC
CCGATATATGTGGCTCGACGCAGCGCACGCACGTCATCTTCAACTACCCG
CAGGTCAAAAGTGAGGAAAAGAACCTCCTGATCAAACAGGATGTGCCCAC
GCGCACGGATCAGCTCAGTCATCTGTACACGCTGCACCTCATTGCTGCAA
ACAACTCGTTCAACGTCCTCATCGACGGCGAGTCCGTTCGCGCCGGTGCC
CTGGAGGGCGCCTGGGACTTTCTCCCGCCCAAGACCATCCCGGACCCAGC
CCAGAGCAAGCCAGCGGACTGGGTGGACGAGGCGATGATTGTGGATCCGT
CAGATATCAAGCCGGCCGGCTGGGACGACATCCCCGCCACCGTGCCTGAC
GCTGAGGCCGTTCAGCCCGAGGACTGGGACGAGGAGGAGGATGGGGCCTG
GGAGGCGCCCATGGTGGACAACCCCGAGTACATGGGCACCTGGACGCCCA
GGATGATCGACAACCCGGCCTACAAGGGCGTCTGGGAGCACCCGCAAGTG
CCAAACCCCGACTACTTCGAGGACCCCAAGCTGCACGCACGCGCCAAGGA
GGTGACGGCTGTCGGCTTCGAGCTCTGGCAAGTCAAGTCGGGCACCATGT
TCGACGACATCATCCTGACTGACTCACTGGATGAGGCCAAAGCCTATGCG
AAGGATACATTTTGGGCCAAGAAGGAGGGCGAGAAAGCTATGTTCGACGC
GGCCGAGGCGGTGCGCGTGGAGAAAGAGAAGGCTGAGCGCGAAGAGATGA
TGAAGAACGCCAAGGTCAATGGGGAAGATGGTGAGAGCATGTTCTCTGGC
TCCGATATTGAGATCTCCGAGATGGACGAAGACGACGAGGACGAAGACGA
CGAGGACGGGGAGATCACCTTCTCAGACGAGCTCTAG
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Coding sequence (CDS) from alignment at chr11:361886..363172-

>NO11G00940.1 ID=NO11G00940.1|Name=NO11G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr11:361886..363172- (Nannochloropsis oceanica)
ATGGCCGGACGCGGGTTGCTCACGGTGGGAATGCTGGCCGCCACGGCTTC
GGCCACTGTCTATTTCAAGGAGAACTTCGATGATAAATGGGAGACCCGGT
GGGTTGTGCCCAGCAAATGGAAGTCGGCAGAGGAGATGGGTAAGTGGGTG
CTCACAGCCGGTGACTGGTTTGGGGACGCCAATGACAAGGGGATCAAGAC
CACGGAAGACGCTCGCTTCTACGGCCTCTCGGCCAAGCTGGCCAAACCCT
TCTCGAACGAGGGCAAGGACCTGGTGCTCCAGTTCACCGTCAAGCACGAG
CAGCGCTTGGACTGTGGTGGCGCCTACATCAAATTACTAGGGCCCAAGCT
GGATCAAGCCTCCTTTGGGGGCGATTCGCCCTATCAAATCATGTTCGGTC
CCGATATATGTGGCTCGACGCAGCGCACGCACGTCATCTTCAACTACCCG
CAGGTCAAAAGTGAGGAAAAGAACCTCCTGATCAAACAGGATGTGCCCAC
GCGCACGGATCAGCTCAGTCATCTGTACACGCTGCACCTCATTGCTGCAA
ACAACTCGTTCAACGTCCTCATCGACGGCGAGTCCGTTCGCGCCGGTGCC
CTGGAGGGCGCCTGGGACTTTCTCCCGCCCAAGACCATCCCGGACCCAGC
CCAGAGCAAGCCAGCGGACTGGGTGGACGAGGCGATGATTGTGGATCCGT
CAGATATCAAGCCGGCCGGCTGGGACGACATCCCCGCCACCGTGCCTGAC
GCTGAGGCCGTTCAGCCCGAGGACTGGGACGAGGAGGAGGATGGGGCCTG
GGAGGCGCCCATGGTGGACAACCCCGAGTACATGGGCACCTGGACGCCCA
GGATGATCGACAACCCGGCCTACAAGGGCGTCTGGGAGCACCCGCAAGTG
CCAAACCCCGACTACTTCGAGGACCCCAAGCTGCACGCACGCGCCAAGGA
GGTGACGGCTGTCGGCTTCGAGCTCTGGCAAGTCAAGTCGGGCACCATGT
TCGACGACATCATCCTGACTGACTCACTGGATGAGGCCAAAGCCTATGCG
AAGGATACATTTTGGGCCAAGAAGGAGGGCGAGAAAGCTATGTTCGACGC
GGCCGAGGCGGTGCGCGTGGAGAAAGAGAAGGCTGAGCGCGAAGAGATGA
TGAAGAACGCCAAGGTCAATGGGGAAGATGGTGAGAGCATGTTCTCTGGC
TCCGATATTGAGATCTCCGAGATGGACGAAGACGACGAGGACGAAGACGA
CGAGGACGGGGAGATCACCTTCTCAGACGAGCTCTAG
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Synonyms
Publications