NO11G00890.1, NO11G00890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00890.1
Unique NameNO11G00890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2147
Alignment locationchr11:350239..352673 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:350239..352673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00890.1 vs.
Match: XP_005856291.1 (octopine dehydrogenase [Nannochloropsis gaditana CCMP526]; EKU20071.1 octopine dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 763.5 bits (1970), Expect = 3.800e-217
Identity = 361/445 (81.12%), Postives = 396/445 (88.99%), Query Frame = 0 
Query:    1 MTLSVAQADKMLKQQMEERIRAPGGSSPRLPRQVTVCGGGNGAHVCAGYFAWKGIKVNVLTRRPQDWASQINVSTEGSSWEEKGPFVGPLQRVSDDAADVVSGSEYIIIAAPANAHPALLAKIAPHLDFGTTLGALFAQGGFDWAVKHAFGPERFKRIGVMFGLQNIPWICKATKYGHSARILGPKKQLWVATYPVEARETTAGELEGMFDIPCETLPNFLNLTLTPSNQIIHPARYHGVFRDWDGQRTYTRAELEARGGLTLYKGMDEYSAEWLAVLDNELQQIKLALLQQFPQLDLSFIVPIGERIIKQYGDDVTDTSSLRRIFSSNRGYAPCLTPLKESSPGRFQPLVNSRLFWEDIPYGLVILKNLVELLGNFPTPAIDFMIRWHQKFMGKEYLLADNQLNPRLLNETGAPNKYGIHCVEELVETCLPRELLHYRHPRSRI 446
            MTLSVAQA+ MLK+Q+EER R PG    RLPRQVT+CGGGNGAHVCAG+ AWKGIKVNVLTRRP++WA  I + T+ SSWE KG F G L  VSD+A+ VV GSEY+IIAAPANAHPALL K+APHLDFG  +GALFAQGGFDWAVKHAFG E+ KRIGVMFGLQNIPWICKA KYGHSARILGPKK LWVATYPVEAR+ TA +LE MFDIPC TLPNFLNLTLTPSNQIIHPARY+ +FRDWDG+R+Y+R ELEAR GLTLYKGMDEYSAE LA LDNELQQIK ALLQQFPQLDLS+++PIGERI+ QYGDDVT+ SSLR+IF SNRGY+ CLTPLKE SPGR+QPLV SRLFWEDIPYGLVILKNLVELLGNFPTPAIDFMIRWHQ FM K+YLL+DNQLNPRLL+ETGAP KYGIH VEE+VETCLPRELL YRHPRSR+
Sbjct:    1 MTLSVAQAENMLKRQLEERKRGPGYG--RLPRQVTICGGGNGAHVCAGFLAWKGIKVNVLTRRPREWAPSIEIITQSSSWEAKGTFAGTLHVVSDEASRVVPGSEYVIIAAPANAHPALLTKVAPHLDFGAKIGALFAQGGFDWAVKHAFGTEKIKRIGVMFGLQNIPWICKAVKYGHSARILGPKKGLWVATYPVEARDATARDLESMFDIPCHTLPNFLNLTLTPSNQIIHPARYYAIFRDWDGKRSYSRRELEAREGLTLYKGMDEYSAECLATLDNELQQIKFALLQQFPQLDLSYVMPIGERIVNQYGDDVTNRSSLRQIFRSNRGYSSCLTPLKEQSPGRYQPLVESRLFWEDIPYGLVILKNLVELLGNFPTPAIDFMIRWHQTFMKKDYLLSDNQLNPRLLHETGAPCKYGIHRVEEIVETCLPRELLGYRHPRSRM 443
The following BLAST results are available for this feature:
BLAST of NO11G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856291.13.800e-21781.12octopine dehydrogenase [Nannochloropsis gaditana C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00890NO11G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00890.1NO11G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00890.1.cds1NO11G00890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00890.1.cds2NO11G00890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00890.1 ID=NO11G00890.1|Name=NO11G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp
TCTTGATATCGACATATCACATTTCTTGTATTGTCTTTTGAGTGAGCGCT
CTGGGAGTCCTTATGCTACGCCCGTCCTCCTATTGCCCTTTTTGATTCTA
CAGCTGATAATTTTAGGATTGTAGGAAACAACAGAAAAAGACTGTCCCTG
TCCCTGTCCCCTCGCCAACCTCCTGCCTGCTCTGTTCCCCGCGTATCCCG
CGATGCATCGGCCGAACGTATCCGGGTCATGGATCATAGGGAGATAGTTG
TGTCGAGGAAGCGTGTCGATAGAAGCTTGATAAAGGGGTCCAAGGGGTTT
ACGAGAACGAGACCCATCCGAGGTTTGTAGTTACGTGTTCCTCATCGGCC
CGCACTCCTGCAGGAGGAGACTTAAAAAATGTTGTCATCAACTGACTGAT
GGCATTGTTCGCATTCGCGCGAAGAAGGGCGGCCACTCATTGCTGCATCT
ATTACCCACAACAAGCAGCGAGGGAGAAGACTGTCAAGGAAGCCTGAGTG
AGGACAAATCCCGCTCGTATTTCTCTTCCACGTACAAACCGACAGGGCAG
GCAGACAGTGAACTTCTTGAAGATCCCCCATCTTACTGACCCCTTACCGT
CACATACCATAGATCTACGTGCTCTTCTTTTGCATAATTCACTTGGAAAG
CCGGAGGTCGGGTGTCCGGCTCGGGGCGAGAAGCACACATCATAATGACG
CTGTCAGTTGCTCAAGCGGACAAGATGCTCAAACAGCAAATGGAGGAGCG
CATCAGGGCTCCGGGTGGCTCTAGTCCGCGGCTGCCGCGGCAGGTCACCG
TATGCGGGGGGGGGAACGGCGCTCATGTGTGTGCAGGGTATTTCGCCTGG
AAGGGCATCAAGGTGAATGTCTTGACACGAAGACCGCAAGACTGGGCGTC
ACAAATCAACGTGAGCACCGAGGGCTCTTCATGGGAGGAGAAGGGCCCGT
TTGTAGGTCCACTGCAGCGGGTAAGTGACGATGCCGCTGACGTCGTTTCC
GGCTCCGAATACATTATCATTGCCGCGCCTGCGAACGCCCACCCGGCCTT
ACTGGCCAAGATAGCACCGCACCTAGACTTTGGGACAACATTGGGAGCCT
TGTTTGCGCAAGGCGGATTTGACTGGGCAGTGAAGCATGCGTTCGGGCCT
GAGCGATTCAAGCGCATAGGCGTCATGTTCGGCCTGCAAAACATCCCGTG
GATATGCAAAGCTACCAAGTACGGTCACTCTGCTCGCATTCTTGGTCCCA
AAAAGCAGTTGTGGGTGGCTACCTATCCTGTTGAGGCTCGTGAGACCACA
GCAGGGGAATTGGAGGGCATGTTTGACATACCCTGCGAGACGCTCCCGAA
CTTTTTGAACCTGACCCTGACCCCCTCCAACCAAATTATCCATCCGGCAC
GGTATCACGGCGTCTTTCGGGATTGGGATGGCCAGCGGACTTATACACGG
GCAGAGCTAGAGGCCCGAGGCGGCCTGACACTCTACAAAGGCATGGACGA
GTATTCGGCCGAGTGGCTTGCCGTGCTAGACAACGAGCTGCAGCAGATAA
AGCTGGCACTCTTACAGCAGTTTCCGCAACTTGACCTGTCTTTCATCGTA
CCTATCGGGGAGCGCATTATCAAGCAGTACGGTGACGACGTCACCGACAC
ATCATCGCTTCGGAGAATCTTCAGCAGTAATAGAGGTTACGCTCCTTGCC
TCACACCGCTAAAAGAATCCAGTCCTGGGCGATTTCAACCACTGGTCAAC
TCACGGCTATTTTGGGAGGACATCCCTTACGGTTTGGTTATTCTCAAAAA
CCTTGTCGAGCTTCTGGGCAACTTTCCTACTCCAGCCATCGATTTTATGA
TCCGTTGGCACCAGAAATTTATGGGCAAGGAATACTTGCTTGCCGACAAC
CAGCTGAATCCTCGTTTACTTAATGAGACTGGGGCTCCAAATAAGTACGG
CATCCATTGCGTGGAAGAGCTGGTGGAGACATGTTTGCCACGTGAACTTT
TACATTACCGCCATCCCCGGTCGCGTATTTAGAATGCTGTGTATTTGGGA
TAAGGCACCAATAGGATAAAATGTACGGCGTACTCATTTACTTTCCTTAA
AAGAAAGAAAGGGAAAAAAGAATAAATGATATCACGATGGTATTATT
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protein sequence of NO11G00890.1

>NO11G00890.1-protein ID=NO11G00890.1-protein|Name=NO11G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MTLSVAQADKMLKQQMEERIRAPGGSSPRLPRQVTVCGGGNGAHVCAGYF
AWKGIKVNVLTRRPQDWASQINVSTEGSSWEEKGPFVGPLQRVSDDAADV
VSGSEYIIIAAPANAHPALLAKIAPHLDFGTTLGALFAQGGFDWAVKHAF
GPERFKRIGVMFGLQNIPWICKATKYGHSARILGPKKQLWVATYPVEARE
TTAGELEGMFDIPCETLPNFLNLTLTPSNQIIHPARYHGVFRDWDGQRTY
TRAELEARGGLTLYKGMDEYSAEWLAVLDNELQQIKLALLQQFPQLDLSF
IVPIGERIIKQYGDDVTDTSSLRRIFSSNRGYAPCLTPLKESSPGRFQPL
VNSRLFWEDIPYGLVILKNLVELLGNFPTPAIDFMIRWHQKFMGKEYLLA
DNQLNPRLLNETGAPNKYGIHCVEELVETCLPRELLHYRHPRSRI*
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mRNA from alignment at chr11:350239..352673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00890.1 ID=NO11G00890.1|Name=NO11G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2435bp|location=Sequence derived from alignment at chr11:350239..352673- (Nannochloropsis oceanica)
TCTTGATATCGACATATCACATTTCTTGTATTGTCTTTTGAGTGAGCGCT
CTGGGAGTCCTTATGCTACGCCCGTCCTCCTATTGCCCTTTTTGATTCTA
CAGCTGATAATTTTAGGATTGTAGGAAACAACAGAAAAAGACTGTCCCTG
TCCCTGTCCCCTCGCCAACCTCCTGCCTGCTCTGTTCCCCGCGTATCCCG
CGATGCATCGGCCGAACGTATCCGGGTCATGGATCATAGGGAGATAGTTG
TGTCGAGGAAGCGTGTCGATAGAAGCTTGATAAAGGGGTCCAAGGGGTTT
ACGAGAACGAGACCCATCCGAGGTTTGTAGTTACGTGTTCCTCATCGGCC
CGCACTCCTGCAGGAGGAGACTTAAAAAATGTTGTCATCAACTGACTGAT
GGCATTGTTCGCATTCGCGCGAAGAAGGGCGGCCACTCATTGCTGCATCT
ATTACCCACAACAAGCAGCGAGGGAGAAGACTGTCAAGGAAGCCTGAGTG
AGGACAAATCCCGCTCGTATTTCTCTTCCACGTACAAACCGACAGGGCAG
GCAGACAGTGAACTTCTTGAAGATCCCCCATCTTACTGACCCCTTACCGT
CACATACCATAGATCTACGTGCTCTTCTTTTGCATAATTCACTTGGAAAG
CCGGAGGTCGGGTGTCCGGCTCGGGGCGAGAAGCACACATCATAATGACG
CTGTCAGTTGCTCAAGCGGACAAGGTACGTCTCTATTTTTCTCTTGGTCG
TCTAAAGAGTTCGCCACAGGTTGAATGCGCCTGGCTTTCTCTCCCTATTT
GTTGCTAGCGGAGCTCATCGATCTGCCATTGTCCCCATGTTCAATTTCAT
CTTTTGAGTAGCCATTGATCAGCCAATTGTGAGAAAGTCTTCAATCCCTG
CGCCACACAGCTCCGCTTACATCTTTACCAGTCTTTTGTTTGACGCCTCG
TCTCGTCGCTAAATCCTCATTCATTTCCCTTCACATGCCTTTTCTTTTTT
TACAACGCTTAGATGCTCAAACAGCAAATGGAGGAGCGCATCAGGGCTCC
GGGTGGCTCTAGTCCGCGGCTGCCGCGGCAGGTCACCGTATGCGGGGGGG
GGAACGGCGCTCATGTGTGTGCAGGGTATTTCGCCTGGAAGGGCATCAAG
GTGAATGTCTTGACACGAAGACCGCAAGACTGGGCGTCACAAATCAACGT
GAGCACCGAGGGCTCTTCATGGGAGGAGAAGGGCCCGTTTGTAGGTCCAC
TGCAGCGGGTAAGTGACGATGCCGCTGACGTCGTTTCCGGCTCCGAATAC
ATTATCATTGCCGCGCCTGCGAACGCCCACCCGGCCTTACTGGCCAAGAT
AGCACCGCACCTAGACTTTGGGACAACATTGGGAGCCTTGTTTGCGCAAG
GCGGATTTGACTGGGCAGTGAAGCATGCGTTCGGGCCTGAGCGATTCAAG
CGCATAGGCGTCATGTTCGGCCTGCAAAACATCCCGTGGATATGCAAAGC
TACCAAGTACGGTCACTCTGCTCGCATTCTTGGTCCCAAAAAGCAGTTGT
GGGTGGCTACCTATCCTGTTGAGGCTCGTGAGACCACAGCAGGGGAATTG
GAGGGCATGTTTGACATACCCTGCGAGACGCTCCCGAACTTTTTGAACCT
GACCCTGACCCCCTCCAACCAAATTATCCATCCGGCACGGTATCACGGCG
TCTTTCGGGATTGGGATGGCCAGCGGACTTATACACGGGCAGAGCTAGAG
GCCCGAGGCGGCCTGACACTCTACAAAGGCATGGACGAGTATTCGGCCGA
GTGGCTTGCCGTGCTAGACAACGAGCTGCAGCAGATAAAGCTGGCACTCT
TACAGCAGTTTCCGCAACTTGACCTGTCTTTCATCGTACCTATCGGGGAG
CGCATTATCAAGCAGTACGGTGACGACGTCACCGACACATCATCGCTTCG
GAGAATCTTCAGCAGTAATAGAGGTTACGCTCCTTGCCTCACACCGCTAA
AAGAATCCAGTCCTGGGCGATTTCAACCACTGGTCAACTCACGGCTATTT
TGGGAGGACATCCCTTACGGTTTGGTTATTCTCAAAAACCTTGTCGAGCT
TCTGGGCAACTTTCCTACTCCAGCCATCGATTTTATGATCCGTTGGCACC
AGAAATTTATGGGCAAGGAATACTTGCTTGCCGACAACCAGCTGAATCCT
CGTTTACTTAATGAGACTGGGGCTCCAAATAAGTACGGCATCCATTGCGT
GGAAGAGCTGGTGGAGACATGTTTGCCACGTGAACTTTTACATTACCGCC
ATCCCCGGTCGCGTATTTAGAATGCTGTGTATTTGGGATAAGGCACCAAT
AGGATAAAATGTACGGCGTACTCATTTACTTTCCTTAAAAGAAAGAAAGG
GAAAAAAGAATAAATGATATCACGATGGTATTATT
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Coding sequence (CDS) from alignment at chr11:350239..352673-

>NO11G00890.1 ID=NO11G00890.1|Name=NO11G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr11:350239..352673- (Nannochloropsis oceanica)
ATGACGCTGTCAGTTGCTCAAGCGGACAAGATGCTCAAACAGCAAATGGA
GGAGCGCATCAGGGCTCCGGGTGGCTCTAGTCCGCGGCTGCCGCGGCAGG
TCACCGTATGCGGGGGGGGGAACGGCGCTCATGTGTGTGCAGGGTATTTC
GCCTGGAAGGGCATCAAGGTGAATGTCTTGACACGAAGACCGCAAGACTG
GGCGTCACAAATCAACGTGAGCACCGAGGGCTCTTCATGGGAGGAGAAGG
GCCCGTTTGTAGGTCCACTGCAGCGGGTAAGTGACGATGCCGCTGACGTC
GTTTCCGGCTCCGAATACATTATCATTGCCGCGCCTGCGAACGCCCACCC
GGCCTTACTGGCCAAGATAGCACCGCACCTAGACTTTGGGACAACATTGG
GAGCCTTGTTTGCGCAAGGCGGATTTGACTGGGCAGTGAAGCATGCGTTC
GGGCCTGAGCGATTCAAGCGCATAGGCGTCATGTTCGGCCTGCAAAACAT
CCCGTGGATATGCAAAGCTACCAAGTACGGTCACTCTGCTCGCATTCTTG
GTCCCAAAAAGCAGTTGTGGGTGGCTACCTATCCTGTTGAGGCTCGTGAG
ACCACAGCAGGGGAATTGGAGGGCATGTTTGACATACCCTGCGAGACGCT
CCCGAACTTTTTGAACCTGACCCTGACCCCCTCCAACCAAATTATCCATC
CGGCACGGTATCACGGCGTCTTTCGGGATTGGGATGGCCAGCGGACTTAT
ACACGGGCAGAGCTAGAGGCCCGAGGCGGCCTGACACTCTACAAAGGCAT
GGACGAGTATTCGGCCGAGTGGCTTGCCGTGCTAGACAACGAGCTGCAGC
AGATAAAGCTGGCACTCTTACAGCAGTTTCCGCAACTTGACCTGTCTTTC
ATCGTACCTATCGGGGAGCGCATTATCAAGCAGTACGGTGACGACGTCAC
CGACACATCATCGCTTCGGAGAATCTTCAGCAGTAATAGAGGTTACGCTC
CTTGCCTCACACCGCTAAAAGAATCCAGTCCTGGGCGATTTCAACCACTG
GTCAACTCACGGCTATTTTGGGAGGACATCCCTTACGGTTTGGTTATTCT
CAAAAACCTTGTCGAGCTTCTGGGCAACTTTCCTACTCCAGCCATCGATT
TTATGATCCGTTGGCACCAGAAATTTATGGGCAAGGAATACTTGCTTGCC
GACAACCAGCTGAATCCTCGTTTACTTAATGAGACTGGGGCTCCAAATAA
GTACGGCATCCATTGCGTGGAAGAGCTGGTGGAGACATGTTTGCCACGTG
AACTTTTACATTACCGCCATCCCCGGTCGCGTATTTAG
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Synonyms
Publications