NO11G00840.1, NO11G00840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00840.1
Unique Name	NO11G00840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1981
Alignment location	chr11:333715..336651 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:333715..336651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO11G00840.1 vs.

BLAST of NO11G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00840	NO11G00840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00840.1	NO11G00840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00840.1.cds1	NO11G00840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00840.1.cds2	NO11G00840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00840.1.cds3	NO11G00840.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00840.1.cds4	NO11G00840.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00840.1.cds5	NO11G00840.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00840.1.cds6	NO11G00840.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:333715..336651+
coding sequence from alignment at chr11:333715..336651+

mRNA sequence

>NO11G00840.1 ID=NO11G00840.1|Name=NO11G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1981bp
ATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCGATGGAGC
CCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGTGACTGGC
CAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCACTCGCTT
ACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGCTCAAGCA
CGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGGCATACAC
ATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAGGACAAGC
AGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATTCAGAAGT
GTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACAAGCCCAC
GTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATCGTTGATC
CGGGTGGCTAGCATCCCTAGGTCGTCCAATTCTGTACCATCCTCCCCCGT
TGCCGCGATTTACACTTTTACCAGCTGTATTGCTGTACAGGCATTGGTGG
AATCGGAAGCCTTGGGGCCTGATGGGCAAGGGCAATGGAAGAAGCCGACG
AAGGCCGCAAAAATATCAAATAGGATGAGGACGAGGACGATGGCAGCCTT
CATCTGTAATTTGGGAGAGACTGGACGCGCTGGTCGTTTGGCGAAGGAGC
AAAACGCTGCCGCCATGCTTTCCATGCTAGCGCCTGCTCACGCCTGTGGG
CCTGCAAAGGGAGGAGCCTTGGAGGCTCACATGCAGGCGGGCTGCGCCAG
ATATGGGGGCCGGCACACATGCAGCTATACCTTTTTTCTTTCCCTCAATC
GATTCTTTCAACTGCTCCTAGAAAAGTGCAGATCTAAACTTTTCCTGCGC
GTCTGTATGTTGACCCTTATCGTCACCACATCGAAGCGGTACAATTTTCG
TGAAGACACGAAAAGGTCTGAAAATACATGTGGAAGCTTACAAGCAGAGT
CGACATCGACTAAACTAGTCAGCCTCCACAACCGGGAGAGGCATCCAAAG
AGGAGCCAAAGAGGAGATGGATCAGTAGCAGGAGGAGGAGGGAAAGGAGA
AGAAGGAGATGGAGGGGGGGAGGAGGAAGTGGAGGAGGTGGACGGGAAGG
GAGACGAGGAGAAGAAGAAGAAGAAGAAGAAGAAAGATAAGAGGAGGAGG
AAGAAGAAGGAGATCAACAAGAAGGAGAAAGAGGAGAAGAAGAAGAGGAA
CAAGAAGAGGAAGAGGAAGAAGGAGGAGGGTGAGACGGAGGGAGACGAGG
AGGAAATGGACGAGAAGGGAGACGAAAGAGAGATAGAGGGAGAGAAGGAG
GAAATAGCAGGAGGAGGAGGAGGAGAAGGGAGAGGCGGCGGAGGAAGAGG
AGGAGATAGGGAGGCGGAGGCGGTGGAAACAGAGGAGGCGGTGGAAGCAG
AGGAGGAGATGGAGGAGGAGGAGGCAGAGGCAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGCTGAGGCGGAGGAGGAGGAGGAGGTCACGGGCGGGCC
ATCCGAGGACTGTATTGGTGTAACACCTGTGAACAGTTCGTGTCTCGGGA
CGGCAATGGGGCACGTAACATCCTGCGGGTGTACAGGAGTATGGTCCGTG
GAGAAGCTCGTCCCCATGATCTTCGGTTCCGTCAATCGCGGCAGGATAAG
CGGACACTCTATGTGTAGCCTCCCCGCTGACCTCCTCTTTTATCCCCCTC
ACCTTTCTCCTCCTGGCCCTGTGTGGGCAGTCCGGAGACTGCCTGATGAA
AAACCTGTCAGTCGCTAGTAAATTTCGGGCAAGGGATAAGGGGTGAATAG
GCAATATTTTATTGTTGGAAGGCTCCCCATCGTATGCAAGTCCTAGAGGA
TGTCAGGTTGCATGCGATTGTTCTAGAGGGATGGAGGAACAGAAAAAAAG
AGCTAAATGACACCTCACAGCTCCACTCCAC

protein sequence of NO11G00840.1

>NO11G00840.1-protein ID=NO11G00840.1-protein|Name=NO11G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MIERTFRGLKKKTGDGALDVDLWNDAGNEKSDWPDARSESSPSSRLYHSL
TAWTGPMPEAFSFMLKHGPLERMLRQSQRARHTHKLNLRDPIVNQALRTS
STSNDDISGMYAAHSEVYLVYSDDLLEPQETSPRGQETFNGDSSVPRSLI
RVASIPRSSNSVPSSPVAAIYTFTSCIAVQALVESEALGPDGQGQWKKPT
KAAKISNRMRTRTMAAFICNLGETGRAGRLAKEQNAAAMLSMLAPAHACG
PAKGGALEAHMQAGCARYGGRHTCSYTFFLSLNRFFQLLLEKCRSKLFLR
VCMLTLIVTTSKRYNFREDTKRSENTCGSLQAESTSTKLVSLHNRERHPK
RSQRGDGSVAGGGGKGEEGDGGGEEEVEEVDGKGDEEKKKKKKKKDKRRR
KKKEINKKEKEEKKKRNKKRKRKKEEGETEGDEEEMDEKGDEREIEGEKE
EIAGGGGGEGRGGGGRGGDREAEAVETEEAVEAEEEMEEEEAEAEEEEEE
EEEEAEAEEEEEVTGGPSEDCIGVTPVNSSCLGTAMGHVTSCGCTGVWSV
EKLVPMIFGSVNRGRISGHSMCSLPADLLFYPPHLSPPGPVWAVRRLPDE
KPVSR*

mRNA from alignment at chr11:333715..336651+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00840.1 ID=NO11G00840.1|Name=NO11G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2937bp|location=Sequence derived from alignment at chr11:333715..336651+ (Nannochloropsis oceanica)
ATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCGATGGAGC
CCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGTGACTGGC
CAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCACTCGCTT
ACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGCTCAAGCA
CGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGGCATACAC
ATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAGGACAAGC
AGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATTCAGAAGT
GTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACAAGCCCAC
GTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATCGTTGATC
CGGTAGGGGCAGAAGGTGAAGAGAAGGAACTGAGGCATCTGCCTGACGAC
AAGAGACTGCTATTGATGATCCACATGCTCCTCACAACTTTTCCTCCCTA
TCGCTGCAAAGAGCAGGGAGGACCACTGTGCGCAATTCCCGTGGGATTTC
TCTTTGTCCCCCTGTTCATAGGGTGGCTAGCATCCCTAGGTCGTCCAATT
CTGTACCATCCTCCCCCGTTGCCGCGATTTACACTTTTACCAGCTGTATT
GCTGTACAGGCATTGGTGGAATCGGAAGCCTTGGGGCCTGATGGGCAAGG
GCAATGGAAGAAGCCGACGAAGGCCGCAAAAATATCAAATAGGATGAGGA
CGAGGACGATGGCAGCCTTCATCTGTAATTTGGGAGAGACTGGACGCGCT
GGTCGTTTGGTAAGGTCGAACTTCTAGAGAAAGGGCGTTCCGTGTGCGCT
GCTGCGGACCTACTCTTGCACTTCGGCACCGAGATCGACACCTTCTGGCC
CATGGAGGGTCGACTGCGTGAACCTAAATAGGTCGGTTGACCAGCTTGCA
GGGAGGAGTTTGCTTCTATCGGCAAATCGCGCTTCTCGTCCATCTTGGGC
TCCGGAACGTTTGGAGATTGTGGTGGTTCCCCTTGAAACGAAGGCGAAGG
AGCAAAACGCTGCCGCCATGCTTTCCATGCTAGCGCCTGCTCACGCCTGT
GGGCCTGCAAAGGGAGGAGCCTTGGAGGCTCACATGCAGGTATTTGAGGG
GCTAGAGGAATTAATTTGTCGGTACGAACTAACAGATCTCTTTGCACGCG
TTGATTGGCATGACCATTCCTTGATAAAGGCGGGCTGCGCCAGATATGGG
GGCCGGCACACATGCAGCTATACCTTTTTTCTTTCCCTCAATCGATTCTT
TCAACTGCTCCTAGAAAAGTGCAGATCTAAACTTTTCCTGCGCGTCTGTA
TGTTGACCCTTATCGTCACCACATCGAAGGTAAATAAATCACAGGAGGCA
CTTTCTACTCATGGGTTCATCTTTTCTAGCATCCAATTTTCAAGAACATA
TCAGGCAAAAGTGCGCTTCTTCCCATAAAGGATTTCCGCAGGAAACAACT
GATAGCATGCTGCATATTGTGAGGGCTAATTACCTTTAGCTTGAAAATCG
TCCTTTTTTTCTCATGCATGAGGAATCAGAGAGTATCTCCGGGTGTTCAT
CCATTTCCTCCTTGTTTTCCACAAAGGAAATCCATTTCCTTCTATGTTCG
TTCGTCCTCGCAGCCTCATCTGCCTTCTACCGCGTTCAATCTCTACCATT
TCTCCTCTCCATCTTACCCACGTCACCTCTTCACTTTCTTCCCGTGCGCA
GCGGTACAATTTTCGTGAAGACACGAAAAGGTCTGAAAATACATGTGGAA
GCTTACAAGCAGAGTCGACATCGACTAAACTAGTCAGCCTCCACAACCGG
GAGAGGCATCCAAAGAGGAGCCAAAGAGGAGATGGATCAGTAGCAGGAGG
AGGAGGGAAAGGAGAAGAAGGAGATGGAGGGGGGGAGGAGGAAGTGGAGG
AGGTGGACGGGAAGGGAGACGAGGAGAAGAAGAAGAAGAAGAAGAAGAAA
GATAAGAGGAGGAGGAAGAAGAAGGAGATCAACAAGAAGGAGAAAGAGGA
GAAGAAGAAGAGGAACAAGAAGAGGAAGAGGAAGAAGGAGGAGGGTGAGA
CGGAGGGAGACGAGGAGGAAATGGACGAGAAGGGAGACGAAAGAGAGATA
GAGGGAGAGAAGGAGGAAAGTAGGAGAAGGGAGAGTGAGAAAAGAGGGAA
GGGTGCGAGGAGGATTGGAAAGGGGAGAAGGAGGAGGAGGAGGCAGAGGG
GGAGGATCAGTAGCAGGAGGAGGAGGAGGAGAAGGGAGAGGCGGCGGAGG
AAGAGGAGGAGATAGGGAGGCGGAGGCGGTGGAAACAGAGGAGGCGGTGG
AAGCAGAGGAGGAGATGGAGGAGGAGGAGGCAGAGGCAGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCTGAGGCGGAGGAGGAGGAGGAGGTCACGGG
CGGGCCATCCGAGGACTGTATTGGTGTAACACCTGTGAACAGTTCGTGTC
TCGGGACGGCAATGGGGCACGTAACATCCTGCGGGTGTACAGGAGTATGG
TCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTCCGTCAATCGCGGCAG
GATAAGCGGACACTCTATGTGTAGCCTCCCCGCTGACCTCCTCTTTTATC
CCCCTCACCTTTCTCCTCCTGGCCCTGTGTGGGCAGTCCGGAGACTGCCT
GATGAAAAACCTGTCAGTCGCTAGTAAATTTCGGGCAAGGGATAAGGGGT
GAATAGGCAATATTTTATTGTTGGAAGGCTCCCCATCGTATGCAAGTCCT
AGAGGATGTCAGGTTGCATGCGATTGTTCTAGAGGGATGGAGGAACAGAA
AAAAAGAGCTAAATGACACCTCACAGCTCCACTCCAC

Coding sequence (CDS) from alignment at chr11:333715..336651+

>NO11G00840.1 ID=NO11G00840.1|Name=NO11G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at chr11:333715..336651+ (Nannochloropsis oceanica)
ATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCGATGGAGC
CCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGTGACTGGC
CAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCACTCGCTT
ACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGCTCAAGCA
CGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGGCATACAC
ATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAGGACAAGC
AGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATTCAGAAGT
GTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACAAGCCCAC
GTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATCGTTGATC
CGGGTGGCTAGCATCCCTAGGTCGTCCAATTCTGTACCATCCTCCCCCGT
TGCCGCGATTTACACTTTTACCAGCTGTATTGCTGTACAGGCATTGGTGG
AATCGGAAGCCTTGGGGCCTGATGGGCAAGGGCAATGGAAGAAGCCGACG
AAGGCCGCAAAAATATCAAATAGGATGAGGACGAGGACGATGGCAGCCTT
CATCTGTAATTTGGGAGAGACTGGACGCGCTGGTCGTTTGGCGAAGGAGC
AAAACGCTGCCGCCATGCTTTCCATGCTAGCGCCTGCTCACGCCTGTGGG
CCTGCAAAGGGAGGAGCCTTGGAGGCTCACATGCAGGCGGGCTGCGCCAG
ATATGGGGGCCGGCACACATGCAGCTATACCTTTTTTCTTTCCCTCAATC
GATTCTTTCAACTGCTCCTAGAAAAGTGCAGATCTAAACTTTTCCTGCGC
GTCTGTATGTTGACCCTTATCGTCACCACATCGAAGCGGTACAATTTTCG
TGAAGACACGAAAAGGTCTGAAAATACATGTGGAAGCTTACAAGCAGAGT
CGACATCGACTAAACTAGTCAGCCTCCACAACCGGGAGAGGCATCCAAAG
AGGAGCCAAAGAGGAGATGGATCAGTAGCAGGAGGAGGAGGGAAAGGAGA
AGAAGGAGATGGAGGGGGGGAGGAGGAAGTGGAGGAGGTGGACGGGAAGG
GAGACGAGGAGAAGAAGAAGAAGAAGAAGAAGAAAGATAAGAGGAGGAGG
AAGAAGAAGGAGATCAACAAGAAGGAGAAAGAGGAGAAGAAGAAGAGGAA
CAAGAAGAGGAAGAGGAAGAAGGAGGAGGGTGAGACGGAGGGAGACGAGG
AGGAAATGGACGAGAAGGGAGACGAAAGAGAGATAGAGGGAGAGAAGGAG
GAAATAGCAGGAGGAGGAGGAGGAGAAGGGAGAGGCGGCGGAGGAAGAGG
AGGAGATAGGGAGGCGGAGGCGGTGGAAACAGAGGAGGCGGTGGAAGCAG
AGGAGGAGATGGAGGAGGAGGAGGCAGAGGCAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGCTGAGGCGGAGGAGGAGGAGGAGGTCACGGGCGGGCC
ATCCGAGGACTGTATTGGTGTAACACCTGTGAACAGTTCGTGTCTCGGGA
CGGCAATGGGGCACGTAACATCCTGCGGGTGTACAGGAGTATGGTCCGTG
GAGAAGCTCGTCCCCATGATCTTCGGTTCCGTCAATCGCGGCAGGATAAG
CGGACACTCTATGTGTAGCCTCCCCGCTGACCTCCTCTTTTATCCCCCTC
ACCTTTCTCCTCCTGGCCCTGTGTGGGCAGTCCGGAGACTGCCTGATGAA
AAACCTGTCAGTCGCTAG

Synonyms

Publications