NO11G00810.1, NO11G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00810.1
Unique NameNO11G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1882
Alignment locationchr11:322751..324632 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:322751..324632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00810.1 vs.
Match: EWM25153.1 (ATPase, F0 complex, subunit B, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 510.8 bits (1314), Expect = 3.100e-141
Identity = 270/324 (83.33%), Postives = 294/324 (90.74%), Query Frame = 0 
Query:    1 MLSTLSRRAVLASARSQRVPLVASFHSGPVRRDAAP-----PTAVDDHARKPADVTLEGPLDRYGLTDWKLYVPVGLALSVPFLANEWIILSEETQLVAAFVAFGTTVYKYAGGAIGRSLDERQDAIIQEINRLEELELKLYKETIDAATIEKTIVEDLTALEAKSEEMAQKLEVVLTGEVKHRIREQFVRWLDAAVASEKTGKKALVQSFLDQTAVQVTKNFASDAKLKKAAVEQVVAILKDPAAKQADLVGAEFERVGKKLWDDLVKKELAGVAPKEHVAALTAEIKAIKAKGPALSEMDLDNAVRVYHTAMKGGVKPAMLK 320
            MLS LSRRA+ ASAR Q +   ++FHSGPVRRDAA      P AVDD +RKPADV+LEGPL+RYGLTDWK+YVP GLALSVPFLANEW ILSEETQLVAAF+AF TTVYKYAGGAIGRSLDERQ+AII+EINRLEELEL+LYKETIDAAT+EKTIVEDLTALEAKS EMA KLE VL GEVKHRIR+Q+VRWLDAAVASEKTGKKALVQSFLD+TAVQVTKNFASDAKLKKAAV+QVVAILKDPAA+QADLVGAEFERVGK +W++LVKKE  G APKE VA L AEIKAIKAKGPA+SEMDLDNAVRVYHTAMKGG+KPA L+
Sbjct:   44 MLSILSRRALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAKLKKAAVDQVVAILKDPAAEQADLVGAEFERVGKTMWEELVKKETGGAAPKEQVATLAAEIKAIKAKGPAVSEMDLDNAVRVYHTAMKGGIKPAQLR 367
The following BLAST results are available for this feature:
BLAST of NO11G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25153.13.100e-14183.33ATPase, F0 complex, subunit B, mitochondrial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00810NO11G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00810.1NO11G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00810.1.cds1NO11G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00810.1 ID=NO11G00810.1|Name=NO11G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
TAAGAGAAAGGCTAAGAGAGCGTGGACTGCATCTCTCTCCGTCATGAAGA
GAAGGCCAGACCGCGTACATCCTCCTCACACCCCAAGGCCTCTCTTCGGT
TTTATCATATTTGAGATTCAAGGTGTTCCTCGGCTACCCGTAACCAGCTC
ATCCATCTTTTCTCTCACCTTCTCACCCACGCATTCAGACTCATGGGGTG
GTCGAGGCCGGGCTTGCGAATGGATGCATCCAATGCCTGAGGGCATATTC
ACAAGCCAAGACTTGCAAAAAGCGCTGGCTCCTCTTATTATCTGGAGATT
AGCCTTTCCCCCGAGGGTCATACTCATGTCCTGTCCCTCGTCCCCAACTA
CAAATACAGGAGAGCGCCCGGTCGTCTTGCCTGCTGTTTGTTAGTTCGAG
TGCAGGCGGTAGTAGCGTCTTCGTACACGTGCACCTCGCCTGCCTATTGC
ATAATGCTCTCTACCCTCTCCCGCCGAGCCGTTCTGGCCTCGGCCCGCTC
CCAACGCGTGCCGCTGGTTGCATCCTTCCACTCAGGTCCTGTACGGCGTG
ATGCCGCCCCCCCGACCGCAGTGGATGACCATGCCCGCAAACCCGCAGAC
GTGACTTTGGAGGGACCTTTAGACCGGTATGGGTTGACAGACTGGAAGCT
GTACGTACCCGTGGGTTTGGCGCTGTCGGTGCCCTTTTTGGCCAATGAGT
GGATCATTCTGAGTGAGGAGACACAGCTGGTGGCGGCCTTTGTGGCGTTC
GGCACCACGGTGTACAAGTACGCCGGTGGGGCCATAGGGCGTAGCTTGGA
TGAACGACAAGATGCGATCATTCAGGAAATCAACAGGTTGGAGGAGCTGG
AACTGAAACTTTACAAGGAGACTATTGATGCTGCCACGATCGAGAAGACG
ATAGTAGAGGACCTGACAGCTTTGGAGGCCAAGAGCGAGGAGATGGCGCA
GAAGCTGGAGGTGGTACTGACGGGTGAGGTGAAGCACCGGATTCGCGAGC
AGTTCGTCCGATGGCTGGACGCGGCGGTGGCGTCGGAGAAGACGGGGAAG
AAGGCCTTGGTGCAATCTTTCCTTGATCAGACCGCTGTCCAGGTCACCAA
GAACTTTGCCTCGGATGCCAAGCTCAAGAAAGCGGCTGTCGAGCAAGTGG
TTGCCATTCTGAAAGACCCTGCGGCTAAGCAGGCTGATTTGGTAGGTGCG
GAGTTTGAGCGTGTGGGGAAGAAATTGTGGGATGACCTTGTGAAGAAGGA
GCTAGCGGGCGTGGCGCCTAAGGAGCATGTGGCGGCACTGACGGCCGAGA
TCAAGGCGATCAAGGCTAAGGGCCCTGCGCTCTCGGAGATGGATTTGGAC
AATGCCGTGCGTGTTTACCACACTGCAATGAAAGGTGGTGTGAAACCGGC
GATGCTTAAGTAGAGAGGAGGAAGGCATGAGGGAGAGAGAGGGGTGGTTG
ATGTGGGAGCTTTTGTTTCTGGGTCGGGGATATAGGTTCTGTGTCTCGGA
GGTGGATTTGGACAATGCCGTGCGTGTTCACCACACTGCAATGAAAGGTG
GTGTGGAACCGGCGATGCTTAAGTAGAGAGGAGGAAGGCATGAGGGAGAG
AGAGGGGTGGTTGATGTGGGAGCTTTTGTTTCTGTGTCGGGGATATAGGG
TGAGGGAGGGATGGGAGGAATAGAAGTGTGTTTTTGGTTCCGTGCGAGGA
GAAAGGGCGTAGCATAGTATTCATTCGTGGTGTAGAGGAAAGAAAGACGA
GATGTGTTGTTTTGTTGCCAAGCCTCATGGTCTGTGTAGGTTGTCGGTTG
CCGTGGCACCAGAAGAGATAAAGAAGGAGCCAAATGAGGCCATCAGAAGA
GAGATGAGATGATGAGCAAAAAAGCTACGAAT
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protein sequence of NO11G00810.1

>NO11G00810.1-protein ID=NO11G00810.1-protein|Name=NO11G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MLSTLSRRAVLASARSQRVPLVASFHSGPVRRDAAPPTAVDDHARKPADV
TLEGPLDRYGLTDWKLYVPVGLALSVPFLANEWIILSEETQLVAAFVAFG
TTVYKYAGGAIGRSLDERQDAIIQEINRLEELELKLYKETIDAATIEKTI
VEDLTALEAKSEEMAQKLEVVLTGEVKHRIREQFVRWLDAAVASEKTGKK
ALVQSFLDQTAVQVTKNFASDAKLKKAAVEQVVAILKDPAAKQADLVGAE
FERVGKKLWDDLVKKELAGVAPKEHVAALTAEIKAIKAKGPALSEMDLDN
AVRVYHTAMKGGVKPAMLK*
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mRNA from alignment at chr11:322751..324632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00810.1 ID=NO11G00810.1|Name=NO11G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at chr11:322751..324632+ (Nannochloropsis oceanica)
TAAGAGAAAGGCTAAGAGAGCGTGGACTGCATCTCTCTCCGTCATGAAGA
GAAGGCCAGACCGCGTACATCCTCCTCACACCCCAAGGCCTCTCTTCGGT
TTTATCATATTTGAGATTCAAGGTGTTCCTCGGCTACCCGTAACCAGCTC
ATCCATCTTTTCTCTCACCTTCTCACCCACGCATTCAGACTCATGGGGTG
GTCGAGGCCGGGCTTGCGAATGGATGCATCCAATGCCTGAGGGCATATTC
ACAAGCCAAGACTTGCAAAAAGCGCTGGCTCCTCTTATTATCTGGAGATT
AGCCTTTCCCCCGAGGGTCATACTCATGTCCTGTCCCTCGTCCCCAACTA
CAAATACAGGAGAGCGCCCGGTCGTCTTGCCTGCTGTTTGTTAGTTCGAG
TGCAGGCGGTAGTAGCGTCTTCGTACACGTGCACCTCGCCTGCCTATTGC
ATAATGCTCTCTACCCTCTCCCGCCGAGCCGTTCTGGCCTCGGCCCGCTC
CCAACGCGTGCCGCTGGTTGCATCCTTCCACTCAGGTCCTGTACGGCGTG
ATGCCGCCCCCCCGACCGCAGTGGATGACCATGCCCGCAAACCCGCAGAC
GTGACTTTGGAGGGACCTTTAGACCGGTATGGGTTGACAGACTGGAAGCT
GTACGTACCCGTGGGTTTGGCGCTGTCGGTGCCCTTTTTGGCCAATGAGT
GGATCATTCTGAGTGAGGAGACACAGCTGGTGGCGGCCTTTGTGGCGTTC
GGCACCACGGTGTACAAGTACGCCGGTGGGGCCATAGGGCGTAGCTTGGA
TGAACGACAAGATGCGATCATTCAGGAAATCAACAGGTTGGAGGAGCTGG
AACTGAAACTTTACAAGGAGACTATTGATGCTGCCACGATCGAGAAGACG
ATAGTAGAGGACCTGACAGCTTTGGAGGCCAAGAGCGAGGAGATGGCGCA
GAAGCTGGAGGTGGTACTGACGGGTGAGGTGAAGCACCGGATTCGCGAGC
AGTTCGTCCGATGGCTGGACGCGGCGGTGGCGTCGGAGAAGACGGGGAAG
AAGGCCTTGGTGCAATCTTTCCTTGATCAGACCGCTGTCCAGGTCACCAA
GAACTTTGCCTCGGATGCCAAGCTCAAGAAAGCGGCTGTCGAGCAAGTGG
TTGCCATTCTGAAAGACCCTGCGGCTAAGCAGGCTGATTTGGTAGGTGCG
GAGTTTGAGCGTGTGGGGAAGAAATTGTGGGATGACCTTGTGAAGAAGGA
GCTAGCGGGCGTGGCGCCTAAGGAGCATGTGGCGGCACTGACGGCCGAGA
TCAAGGCGATCAAGGCTAAGGGCCCTGCGCTCTCGGAGATGGATTTGGAC
AATGCCGTGCGTGTTTACCACACTGCAATGAAAGGTGGTGTGAAACCGGC
GATGCTTAAGTAGAGAGGAGGAAGGCATGAGGGAGAGAGAGGGGTGGTTG
ATGTGGGAGCTTTTGTTTCTGGGTCGGGGATATAGGTTCTGTGTCTCGGA
GGTGGATTTGGACAATGCCGTGCGTGTTCACCACACTGCAATGAAAGGTG
GTGTGGAACCGGCGATGCTTAAGTAGAGAGGAGGAAGGCATGAGGGAGAG
AGAGGGGTGGTTGATGTGGGAGCTTTTGTTTCTGTGTCGGGGATATAGGG
TGAGGGAGGGATGGGAGGAATAGAAGTGTGTTTTTGGTTCCGTGCGAGGA
GAAAGGGCGTAGCATAGTATTCATTCGTGGTGTAGAGGAAAGAAAGACGA
GATGTGTTGTTTTGTTGCCAAGCCTCATGGTCTGTGTAGGTTGTCGGTTG
CCGTGGCACCAGAAGAGATAAAGAAGGAGCCAAATGAGGCCATCAGAAGA
GAGATGAGATGATGAGCAAAAAAGCTACGAAT
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Coding sequence (CDS) from alignment at chr11:322751..324632+

>NO11G00810.1 ID=NO11G00810.1|Name=NO11G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr11:322751..324632+ (Nannochloropsis oceanica)
ATGCTCTCTACCCTCTCCCGCCGAGCCGTTCTGGCCTCGGCCCGCTCCCA
ACGCGTGCCGCTGGTTGCATCCTTCCACTCAGGTCCTGTACGGCGTGATG
CCGCCCCCCCGACCGCAGTGGATGACCATGCCCGCAAACCCGCAGACGTG
ACTTTGGAGGGACCTTTAGACCGGTATGGGTTGACAGACTGGAAGCTGTA
CGTACCCGTGGGTTTGGCGCTGTCGGTGCCCTTTTTGGCCAATGAGTGGA
TCATTCTGAGTGAGGAGACACAGCTGGTGGCGGCCTTTGTGGCGTTCGGC
ACCACGGTGTACAAGTACGCCGGTGGGGCCATAGGGCGTAGCTTGGATGA
ACGACAAGATGCGATCATTCAGGAAATCAACAGGTTGGAGGAGCTGGAAC
TGAAACTTTACAAGGAGACTATTGATGCTGCCACGATCGAGAAGACGATA
GTAGAGGACCTGACAGCTTTGGAGGCCAAGAGCGAGGAGATGGCGCAGAA
GCTGGAGGTGGTACTGACGGGTGAGGTGAAGCACCGGATTCGCGAGCAGT
TCGTCCGATGGCTGGACGCGGCGGTGGCGTCGGAGAAGACGGGGAAGAAG
GCCTTGGTGCAATCTTTCCTTGATCAGACCGCTGTCCAGGTCACCAAGAA
CTTTGCCTCGGATGCCAAGCTCAAGAAAGCGGCTGTCGAGCAAGTGGTTG
CCATTCTGAAAGACCCTGCGGCTAAGCAGGCTGATTTGGTAGGTGCGGAG
TTTGAGCGTGTGGGGAAGAAATTGTGGGATGACCTTGTGAAGAAGGAGCT
AGCGGGCGTGGCGCCTAAGGAGCATGTGGCGGCACTGACGGCCGAGATCA
AGGCGATCAAGGCTAAGGGCCCTGCGCTCTCGGAGATGGATTTGGACAAT
GCCGTGCGTGTTTACCACACTGCAATGAAAGGTGGTGTGAAACCGGCGAT
GCTTAAGTAG
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Synonyms
Publications