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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:280579..282699 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00660.1 vs.
Match: XP_005855678.1 (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana CCMP526]; EKU20682.1 short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 436.4 bits (1121), Expect = 7.800e-119 Identity = 231/339 (68.14%), Postives = 271/339 (79.94%), Query Frame = 0
Query: 2 AGAAASGG---KERPVKPLGWVWFSGLMLGMTACLPYIIEYMCSKSYATHRHGVVLVTSATSAVGKAACLALLADGYTVYGGVRVKSEEHLVKELGSPKILPIVLDIHKSETIEAAVGKVKSELEGRAFTALVNTIEAGGSTSPMETQDLPYLKRLLETNTVGTLGLVQIFLPLIREQGSRIVLMSSLCAHLTPPLFGGLCASKAALESLADAMRRELAPFQISISSIEPAVTSPAEENEGG---GQKA-------REVYAHLFADDKAQVLVSPSAAGAGGGGAAAAAADAVARAVIHAVSSTHPKIRYPAGRVGRLPAPFVAFVSWGLPGRVQDVLL 328
A ASGG KE+ VKPLGW+WF+G++LG+ ACLPY++E+MCSK+YATHRHGVVLVT ATS VGKA CLAL+ DGY VYGGVR S+E +V EL S K+LP+VLD+ T+EAAV KVKSEL+GR FTALVNTI+AGG+ SP+E+QDL LKRL + NT GTL +VQ FLPLIRE GSR+VLMSSLCAHLT PLFGGLCASKAALESLADA+RRELA ++IS+SSIEPAV P E EGG G K+ +VYAHLFADDKA+ LVSPSA G G + A A+AVA+ VIHAVSSTHPK+RYPAG +G LPA AF+SWGLPGR+QD+LL
Sbjct: 5 ARTMASGGVGSKEKTVKPLGWIWFTGIVLGIAACLPYVVEFMCSKAYATHRHGVVLVTDATSPVGKATCLALMEDGYAVYGGVRSASDERVVTELDSRKLLPVVLDMQNPGTVEAAVAKVKSELQGRPFTALVNTIDAGGAISPIESQDLSSLKRLFDINTFGTLAVVQAFLPLIREHGSRLVLMSSLCAHLTSPLFGGLCASKAALESLADALRRELAHYRISVSSIEPAVAFP-EMPEGGKDTGAKSAAAVELDSKVYAHLFADDKARALVSPSANGGEGRRSGTAVAEAVAQVVIHAVSSTHPKLRYPAGYIGHLPASVAAFISWGLPGRMQDLLL 342
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00660.1 ID=NO11G00660.1|Name=NO11G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp
CTCATCAGATTAGGCTAGCACCAACAGCGCAAACTAGCGATCATGGCGGG
CGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGG
TATGGTTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATC
ATTGAGTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGT
GCTGGTGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCAT
TGCTGGCAGACGGGTACACGGTTTATGGTGGCGTGCGCGTCAAATCGGAA
GAGCACTTGGTGAAAGAGCTGGGTTCTCCGAAGATCTTACCTATTGTCCT
GGACATCCACAAATCCGAAACAATCGAGGCGGCCGTGGGAAAGGTGAAGT
CCGAGCTCGAAGGGCGGGCGTTCACTGCTCTTGTCAACACTATCGAAGCC
GGTGGCTCCACTAGTCCGATGGAGACGCAAGACCTGCCCTATCTCAAACG
CTTGTTGGAGACAAACACCGTAGGCACGCTTGGGCTAGTCCAGATCTTCC
TACCTCTCATCCGGGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGCTG
TGCGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAGGC
GGCTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTTCC
AGATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAGAG
AATGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTTGC
GGATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGGAG
GAGGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGATT
CATGCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGCAGGAAGAGT
GGGTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCCTG
GGAGAGTCCAAGATGTCTTGCTTGGCTAGGATAGCGAGGTAGAGGGGTAT
GAGTGGGGATGATATGACAGGATGGGAGGGAGGGAGAGACGACCTAGGTG
GGGGAACGAGAGGGAGGGAAAAGGAAGGAGCGCAGGAGAAAACGGCGGCA
GCAGCAAAGGCAAAGGCAAAGGCAAAGGCAAAGGCAGCAGTGACCGTGGC
AATAGCGACCGATAAAAATGGCCACCGTGTACCATCATTCATGTCATGAT
GTTGTCTGTTTGGTTGGATTGGTGAGGGAGGGAAGGAGGGAGAGAGGGGG
ACTTTGAGAGAACGATGAAAGTGGGCTTGGGCTTGCGCAAGGAGGTGATG
CGTTTGCAAATTGTAACTGTGTCAAAGAAAGGTGGATGGAATTTCGCGCA
CCTTTCTGTGAGTTTAAATGTGTATGTGTCTCTCAGTGTGTGCACCTTGG
ACAGACGGTAATTGAGAGGTGAGAGAGTAAAAGAAAAGGAATTGAGAACG
CGAACATGGAAAAGAAGCTAGAAACCTAGGTACACAGATTAAGTCATGAG
CGACAAGGAAAAAGAAGCAGTAAGGATGTTACACATAATTATATGTACAT
CACAAATATGAATGTCTAC back to topprotein sequence of NO11G00660.1 >NO11G00660.1-protein ID=NO11G00660.1-protein|Name=NO11G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MAGAAASGGKERPVKPLGWVWFSGLMLGMTACLPYIIEYMCSKSYATHRH
GVVLVTSATSAVGKAACLALLADGYTVYGGVRVKSEEHLVKELGSPKILP
IVLDIHKSETIEAAVGKVKSELEGRAFTALVNTIEAGGSTSPMETQDLPY
LKRLLETNTVGTLGLVQIFLPLIREQGSRIVLMSSLCAHLTPPLFGGLCA
SKAALESLADAMRRELAPFQISISSIEPAVTSPAEENEGGGQKAREVYAH
LFADDKAQVLVSPSAAGAGGGGAAAAAADAVARAVIHAVSSTHPKIRYPA
GRVGRLPAPFVAFVSWGLPGRVQDVLLG* back to topmRNA from alignment at chr11:280579..282699- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00660.1 ID=NO11G00660.1|Name=NO11G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr11:280579..282699- (Nannochloropsis oceanica)
CTCATCAGATTAGGCTAGCACCAACAGCGCAAACTAGCGATCATGGCGGG
CGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGG
TATGGTTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATC
ATTGAGTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGT
GCTGGTGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCAT
TGCTGGCAGACGGGTACACGGTACGTGTATGAGGGAGGGTGCGGAGGGTG
GGAATGGAGGGTTGAAATGGACCCGGGATTAAAGTGAGGAAATGAGACGC
AAAGCGAGGGAGTTCGGGTGAGCGAGGGGACAAAGGATGAGCAGAGTAAG
CTAATAGTAACGTGTGCCTGATGAGACATGCTCTCCGTCCTCTTTCCTTT
CAGGTTTATGGTGGCGTGCGCGTCAAATCGGAAGAGCACTTGGTGAAAGA
GCTGGGTTCTCCGAAGATCTTACCTATTGTCCTGGACATCCACAAATCCG
AAACAATCGAGGCGGCCGTGGGAAAGGTAAATGGAGCAGGAAAGGAACAA
GTGATTGGATATGTGTATTTGTGAGGCTCTCATCACGTTTTCTGTGTGGA
ATCTATCCCATAGTCGCCTGCATGCCTGTTTTCACCCCTTGCTCTCCCTC
CCTACCTCCCAGGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTGCTCT
TGTCAACACTATCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACGCAAG
ACCTGCCCTATCTCAAACGCTTGTTGGAGACAAACACCGTAGGCACGCTT
GGGCTAGTCCAGATCTTCCTACCTCTCATCCGGTACCTCCTCCTTCTCCT
CATTCCTTCCCCCATTCCCCTTCCCCCACGATCCTCCTATCTTCAACTTT
CTCCCTCCCTCCCTTGCTGTTTCACTACCCTTGAGACGGGAGTATTGATG
CCCGTCTGACTCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCTTCGCTT
CCTACCCGATGACAGGGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGC
TGTGCGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAG
GCGGCTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTT
CCAGATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAG
AGAATGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTT
GCGGATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGG
AGGAGGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGA
TTCATGCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGCAGGAAGA
GTGGGTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCC
TGGGAGAGTCCAAGATGTCTTGCTTGGCTAGGATAGCGAGGTAGAGGGGT
ATGAGTGGGGATGATATGACAGGATGGGAGGGAGGGAGAGACGACCTAGG
TGGGGGAACGAGAGGGAGGGAAAAGGAAGGAGCGCAGGAGAAAACGGCGG
CAGCAGCAAAGGCAAAGGCAAAGGCAAAGGCAAAGGCAGCAGTGACCGTG
GCAATAGCGACCGATAAAAATGGCCACCGTGTACCATCATTCATGTCATG
ATGTTGTCTGTTTGGTTGGATTGGTGAGGGAGGGAAGGAGGGAGAGAGGG
GGACTTTGAGAGAACGATGAAAGTGGGCTTGGGCTTGCGCAAGGAGGTGA
TGCGTTTGCAAATTGTAACTGTGTCAAAGAAAGGTGGATGGAATTTCGCG
CACCTTTCTGTGAGTTTAAATGTGTATGTGTCTCTCAGTGTGTGCACCTT
GGACAGACGGTAATTGAGAGGTGAGAGAGTAAAAGAAAAGGAATTGAGAA
CGCGAACATGGAAAAGAAGCTAGAAACCTAGGTACACAGATTAAGTCATG
AGCGACAAGGAAAAAGAAGCAGTAAGGATGTTACACATAATTATATGTAC
ATCACAAATATGAATGTCTAC back to topCoding sequence (CDS) from alignment at chr11:280579..282699- >NO11G00660.1 ID=NO11G00660.1|Name=NO11G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr11:280579..282699- (Nannochloropsis oceanica)
ATGGCGGGCGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCT
AGGTTGGGTATGGTTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTC
CTTACATCATTGAGTACATGTGCTCCAAGTCGTATGCAACACACCGTCAT
GGCGTGGTGCTGGTGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTG
CTTGGCATTGCTGGCAGACGGGTACACGGTTTATGGTGGCGTGCGCGTCA
AATCGGAAGAGCACTTGGTGAAAGAGCTGGGTTCTCCGAAGATCTTACCT
ATTGTCCTGGACATCCACAAATCCGAAACAATCGAGGCGGCCGTGGGAAA
GGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTGCTCTTGTCAACACTA
TCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACGCAAGACCTGCCCTAT
CTCAAACGCTTGTTGGAGACAAACACCGTAGGCACGCTTGGGCTAGTCCA
GATCTTCCTACCTCTCATCCGGGAGCAAGGCTCGAGGATCGTCCTCATGT
CCTCGCTGTGCGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCT
AGTAAGGCGGCTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGC
GCCCTTCCAGATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGG
CGGAAGAGAATGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCAC
TTGTTTGCGGATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGG
AGCGGGAGGAGGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGG
CGGTGATTCATGCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGCA
GGAAGAGTGGGTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGG
TCTGCCTGGGAGAGTCCAAGATGTCTTGCTTGGCTAG back to top
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