NO11G00500.1, NO11G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00500.1
Unique NameNO11G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2469
Alignment locationchr11:218777..221712 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:218777..221712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00500.1 vs.
Match: EWM25170.1 (hypothetical protein Naga_100490g1 [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 9.300e-12
Identity = 75/171 (43.86%), Postives = 93/171 (54.39%), Query Frame = 0
Query:   58 QMLLKRRREDEIEEHQQLQQRQPLPPSLKSSPSWHKQEQSSTMPPYSASFSFPSSSPSSPSSSFSSSSPLSPQTQIRNIVSSPETTLPLLLSLIATHAPQSYFDAENAAAVLNRLGREGGKETAQLVKDPRLGLLLTRLRTLGEGIE-----GGIEGGEEDE---GEEEVR 221
            Q  + RR E+E    +  +  + LP     SP  H +  S      +AS S   S  SS SSS SSS P SP   +R  VSSP+T LP LLSL++ HA ++YFD E AAA LNRLG+E G+  + + KD  L  LL RL  LGEG+E     GG  G  ED    GEE  R
Sbjct:  109 QARVLRRGEEEEGGREGKEAFRALP-----SPLAHPKSPSLQ----TASLSHAPSLSSSSSSSSSSSPPQSPNAILRAAVSSPQTPLPFLLSLLSQHASRTYFDTETAAAFLNRLGKEQGRGLSVVRKDRGLQALLARLLILGEGVEDEGEAGGGRGAREDSLAPGEEMER 270          
The following BLAST results are available for this feature:
BLAST of NO11G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25170.19.300e-1243.86hypothetical protein Naga_100490g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00500NO11G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00500.1NO11G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00500.1.cds1NO11G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00500.1.cds2NO11G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00500.1.cds3NO11G00500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00500.1 ID=NO11G00500.1|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp
ATGAGGAGAAGAGCGAGATGCTCGCCCTGTGTCTTGCTGCTAGTCTCATC
CTGCTGGGCGCTCTTCCACCTAGCACGGGCCTTCTGGCTACCGCAAGCGC
GACTTTCTGCCCATGTTATTGATATGAGAAGAATCCCTGCGGACTGCTGC
AGCAGCAGCAGAGAAGCAGTGCAGATGCTGCTAAAAAGAAGGAGAGAAGA
TGAAATAGAGGAGCATCAGCAACTACAACAACGGCAACCGTTACCCCCCT
CATTGAAGTCATCTCCTTCATGGCACAAGCAAGAGCAGTCAAGCACAATG
CCCCCCTATTCCGCCTCCTTCTCCTTCCCTTCCTCCTCCCCTTCCTCCCC
CTCATCCTCATTCTCCTCTTCCTCCCCCCTCTCCCCGCAAACCCAAATCC
GCAATATCGTCTCCTCTCCTGAGACGACCCTTCCCCTCCTCCTCTCCCTC
ATCGCCACACACGCCCCTCAGTCATATTTTGATGCCGAAAACGCCGCAGC
GGTGCTTAACAGACTAGGCCGGGAAGGAGGGAAGGAGACTGCCCAGCTGG
TGAAGGACCCGCGGTTGGGCCTGCTATTGACGAGGCTGCGGACGTTGGGG
GAAGGGATAGAGGGGGGAATTGAAGGGGGGGAGGAGGATGAGGGGGAGGA
GGAAGTGAGGGTGTTGCGGTTGATGAGGGAGAGGATGTGGACTCCGAAGG
CCTGTACTCTGATTTTAAACGGGCTGGGGAAAGTGTTCAGGCAAGGGGCA
GGGGGAGGAAGGGAGGGAGGGAGGGAGTGGGAGAGGAATGTGGCGATGCT
TCCGGAGCTCTCCACCCTCGTCAACGCCCTCGCCCGGCTCCTTCCCCCCT
CCCTTCCTCCCTTCTTCCTCCGCGACCTGGAGGCCCGCGCAGACGCCCTC
TTGTTCCACTGCCAGCCCCAAGATCTCGCCAACCTCATCCACGGCTTTGC
CAAGCTCCACCACGAACACGAGGGAGGGAAGGACGGCGAGGGAGGGAGGG
AGGGCGGGCCGGACAGCAGCGAAAGGGAGGGAGGGCGGGACAGAGGACAG
TGCTCCTTGCCCTTCCTTAGACGTTTCCAAGAAGCAGCAGCCACGCAAGC
GCAGTACTTCAAGCCCTTGGAGCTAGCCATGACAGTATATGGGCTCTCCC
ACCTCCTCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCGAGCCTTATTTC
TGCCCGACGTGGGCGCGGGCTTTCCTAAACCTTAGCGAGGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGACAGCAGGGCCTACGTGCGGGGGAGGTGG
TGATGTTCTTGAACGGTTTGGCGCGAATGGGGCACTGCCCTCCTCTTTCC
GAGCTACAGCAATATACCCGGAAGATCTTCTCCTGCATCCCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CAACCTTGTCCCTGAGTGTGTTTTCAGCGCATGAGCTGACGACGTTAGCG
CATGCTTGGGTCTTGTTCCGGGAAGGGGGGGAGGGAGGGAGGGAGGGCGG
GGAGGAGGACGAGGTGGGTGAGGTAGTAGGAGAAGTATTGGAAGCAGTGG
TAGCTGAGGCGGAGGGAAGGCTTGGGGAGTTTCAGGCGGGAGAAATTGCG
TCCCTAATCCACTCTCTGGGAAAAGCCCGATGTCCTCCCCCCGAGTCGTT
TCTGGTAACGGCCGTGGAACGGTTGGAGGCGTGCCTCGCCGAGGAGAGGG
AGGGAGGAAGTGAGGGAGGGAGGGATGGGGGAGTGTTGGGGCCGCGGGCG
GTGTGCAATCTGATGAGCGGGTGTGGGAAGTTGGGCTTCTATCCCGGCTT
GACGCTCGTGGAGGGGGTGAGGGAGGTATTGTTCGCACATCTCCCCCAAC
TCAACGCCCGTGACGTCATCGACATGTTGAGTGCATGGGCGGACCTGCAC
ACCTTATCCTCCTTCCCTCCCTCTTCCTCCTCGTCCTCCCCGTCTGCGTT
GGACAGTAGGATGGATGCGGCCCTTCTGGCCGTCCTTCTACCTATGGTCC
CTACTGTGGTGCTGGAGGAACAGCAGCCTTCCTCCCCCTCCCCCCTTCCT
TCCTCGGAGGGAGGACTGGTGCGTCTTCTCGGCGCTCTCTGGCGCCTTGA
GCCTGTTCTCTCTTCTCTTCCGCAAACGGAAGCGGAGGCCCTCCTCCCCG
CCCTCCCTCCCGATCTCACCCCCTACCGTTACTTGTCGTTGATTGACAAA
GTGCAGACGCGCCTCCTTGAGGTGACCTTGGGGGGAGGGAGGGAAGGAGG
GAGGGAGGGCGGGCGGGCGGGAAATTGGAAGGCAGGAGTTCGGGCGTTGG
GGGCCGTAGTGAGGCTGGCACTGGTGATGGAGGAGACGGGAGAGGGGGAG
GGCGGGGCAGAGGAAGGGGGGGGATGCAACAGTACCGAGCCTTTCTGCGG
GTGTTGGCGGAGGGGGTAA
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protein sequence of NO11G00500.1

>NO11G00500.1-protein ID=NO11G00500.1-protein|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=823bp
MRRRARCSPCVLLLVSSCWALFHLARAFWLPQARLSAHVIDMRRIPADCC
SSSREAVQMLLKRRREDEIEEHQQLQQRQPLPPSLKSSPSWHKQEQSSTM
PPYSASFSFPSSSPSSPSSSFSSSSPLSPQTQIRNIVSSPETTLPLLLSL
IATHAPQSYFDAENAAAVLNRLGREGGKETAQLVKDPRLGLLLTRLRTLG
EGIEGGIEGGEEDEGEEEVRVLRLMRERMWTPKACTLILNGLGKVFRQGA
GGGREGGREWERNVAMLPELSTLVNALARLLPPSLPPFFLRDLEARADAL
LFHCQPQDLANLIHGFAKLHHEHEGGKDGEGGREGGPDSSEREGGRDRGQ
CSLPFLRRFQEAAATQAQYFKPLELAMTVYGLSHLLPFPPSLPPSLEPYF
CPTWARAFLNLSEGEGGREGGREGQQGLRAGEVVMFLNGLARMGHCPPLS
ELQQYTRKIFSCIPSSSSSSSSSSSSSSSSSSSSTLSLSVFSAHELTTLA
HAWVLFREGGEGGREGGEEDEVGEVVGEVLEAVVAEAEGRLGEFQAGEIA
SLIHSLGKARCPPPESFLVTAVERLEACLAEEREGGSEGGRDGGVLGPRA
VCNLMSGCGKLGFYPGLTLVEGVREVLFAHLPQLNARDVIDMLSAWADLH
TLSSFPPSSSSSSPSALDSRMDAALLAVLLPMVPTVVLEEQQPSSPSPLP
SSEGGLVRLLGALWRLEPVLSSLPQTEAEALLPALPPDLTPYRYLSLIDK
VQTRLLEVTLGGGREGGREGGRAGNWKAGVRALGAVVRLALVMEETGEGE
GGAEEGGGCNSTEPFCGCWRRG*
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mRNA from alignment at chr11:218777..221712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00500.1 ID=NO11G00500.1|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2936bp|location=Sequence derived from alignment at chr11:218777..221712- (Nannochloropsis oceanica)
ATGAGGAGAAGAGCGAGATGCTCGCCCTGTGTCTTGCTGCTAGGTAAGCA TCGAGAGAGAGAGAGGGAGAGAGAGGGAGAGAGGGAGGTAAAGCGGGGGA GCAAAGCCGGGGAAGCAAAATTAGGGGAGCAAAGCGTAATATGTGGTGAG ATCATTGATATTCCCTACCAAGACCGTGGGCTTGTGCTGATCCATCTAAA GTCACAAACTCCCCAACTTACCCACCTTCCGTTCGTCCCTCCCCCCTTCC CTCCCTTCCTTCATCCCTCCCTCTCCTCCCTCCCCTCCCTCCGCTCTTCC TCGCCCCCTCCCAAAGTCTCATCCTGCTGGGCGCTCTTCCACCTAGCACG GGCCTTCTGGCTACCGCAAGCGCGACTTTCTGCCCATGTTATTGATATGA GAAGAATCCCTGCGGACTGCTGCAGCAGCAGCAGAGAAGCAGTGCAGATG CTGCTAAAAAGAAGGAGAGAAGATGAAATAGAGGAGCATCAGCAACTACA ACAACGGCAACCGTTACCCCCCTCATTGAAGTCATCTCCTTCATGGCACA AGCAAGAGCAGTCAAGCACAATGCCCCCCTATTCCGCCTCCTTCTCCTTC CCTTCCTCCTCCCCTTCCTCCCCCTCATCCTCATTCTCCTCTTCCTCCCC CCTCTCCCCGCAAACCCAAATCCGCAATATCGTCTCCTCTCCTGAGACGA CCCTTCCCCTCCTCCTCTCCCTCATCGCCACACACGCCCCTCAGTCATAT TTTGATGCCGAAAACGCCGCAGCGGTGCTTAACAGACTAGGCCGGGAAGG AGGGAAGGAGACTGCCCAGCTGGTGAAGGACCCGCGGTTGGGCCTGCTAT TGACGAGGCTGCGGACGTTGGGGGAAGGGATAGAGGGGGGAATTGAAGGG GGGGAGGAGGATGAGGGGGAGGAGGAAGTGAGGGTGTTGCGGTTGATGAG GGAGAGGATGTGGACTCCGAAGGCCTGTACTCTGATTTTAAACGGGCTGG GGAAAGTGTTCAGGCAAGGGGCAGGGGGAGGAAGGGAGGGAGGGAGGGAG TGGGAGAGGAATGTGGCGATGCTTCCGGGTATTGTAGGATTCGTTACGGC GTGTCTGACACGACAGGCCGAAGCCCTGAGTCCTCGTCATGTCGCCCTCT CCCTCAATGCCCTCGCAAAACTCCAAGACAACGGCCTCCCCCTCTCCCCC TCCCTCCTGTCCGCCTTCCTTCCAACCCTCCTCCACCGCTCCCACGACAT TCTCTACCTCTTCCCCCCCAAGAGCTCTCCACCCTCGTCAACGCCCTCGC CCGGCTCCTTCCCCCCTCCCTTCCTCCCTTCTTCCTCCGCGACCTGGAGG CCCGCGCAGACGCCCTCTTGTTCCACTGCCAGCCCCAAGATCTCGCCAAC CTCATCCACGGCTTTGCCAAGCTCCACCACGAACACGAGGGAGGGAAGGA CGGCGAGGGAGGGAGGGAGGGCGGGCCGGACAGCAGCGAAAGGGAGGGAG GGCGGGACAGAGGACAGTGCTCCTTGCCCTTCCTTAGACGTTTCCAAGAA GCAGCAGCCACGCAAGCGCAGTACTTCAAGCCCTTGGAGCTAGCCATGAC AGTATATGGGCTCTCCCACCTCCTCCCCTTCCCTCCCTCCCTCCCTCCCT CCCTCGAGCCTTATTTCTGCCCGACGTGGGCGCGGGCTTTCCTAAACCTT AGCGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACAGCAGGGCCT ACGTGCGGGGGAGGTGGTGATGTTCTTGAACGGTTTGGCGCGAATGGGGC ACTGCCCTCCTCTTTCCGAGCTACAGCAATATACCCGGAAGATCTTCTCC TGCATCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCAACCTTGTCCCTGAGTGTGTTTTCAGCGCATG AGCTGACGACGTTAGCGCATGCTTGGGTCTTGTTCCGGGAAGGGGGGGAG GGAGGGAGGGAGGGCGGGGAGGAGGACGAGGTGGGTGAGGTAGTAGGAGA AGTATTGGAAGCAGTGGTAGCTGAGGCGGAGGGAAGGCTTGGGGAGTTTC AGGCGGGAGAAATTGCGTCCCTAATCCACTCTCTGGGAAAAGCCCGATGT CCTCCCCCCGAGTCGTTTCTGGTAACGGCCGTGGAACGGTTGGAGGCGTG CCTCGCCGAGGAGAGGGAGGGAGGAAGTGAGGGAGGGAGGGATGGGGGAG TGTTGGGGCCGCGGGCGGTGTGCAATCTGATGAGCGGGTGTGGGAAGTTG GGCTTCTATCCCGGCTTGACGCTCGTGGAGGGGGTGAGGGAGGTATTGTT CGCACATCTCCCCCAACTCAACGCCCGTGACGTCATCGACATGTTGAGTG CATGGGCGGACCTGCACACCTTATCCTCCTTCCCTCCCTCTTCCTCCTCG TCCTCCCCGTCTGCGTTGGACAGTAGGATGGATGCGGCCCTTCTGGCCGT CCTTCTACCTATGGTCCCTACTGTGGTGCTGGAGGAACAGCAGCCTTCCT CCCCCTCCCCCCTTCCTTCCTCGGAGGGAGGACTGGTGCGTCTTCTCGGC GCTCTCTGGCGCCTTGAGCCTGTTCTCTCTTCTCTTCCGCAAACGGAAGC GGAGGCCCTCCTCCCCGCCCTCCCTCCCGATCTCACCCCCTACCGTTACT TGTCGTTGATTGACAAAGTGCAGACGCGCCTCCTTGAGGTGACCTTGGGG GGAGGGAGGGAAGGAGGGAGGGAGGGCGGGCGGGCGGGAAATTGGAAGGC AGGAGTTCGGGCGTTGGGGGCCGTAGTGAGGCTGGCACTGGTGATGGAGG AGACGGGAGAGGGGGAGGGCGGGGCAGAGGAAGGGGGGGGATGCAACAGT ACCGAGCCTTTCTGCGGGTGTTGGCGGAGGGGGTAA
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Coding sequence (CDS) from alignment at chr11:218777..221712-

>NO11G00500.1 ID=NO11G00500.1|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=2469bp|location=Sequence derived from alignment at chr11:218777..221712- (Nannochloropsis oceanica)
ATGAGGAGAAGAGCGAGATGCTCGCCCTGTGTCTTGCTGCTAGTCTCATC
CTGCTGGGCGCTCTTCCACCTAGCACGGGCCTTCTGGCTACCGCAAGCGC
GACTTTCTGCCCATGTTATTGATATGAGAAGAATCCCTGCGGACTGCTGC
AGCAGCAGCAGAGAAGCAGTGCAGATGCTGCTAAAAAGAAGGAGAGAAGA
TGAAATAGAGGAGCATCAGCAACTACAACAACGGCAACCGTTACCCCCCT
CATTGAAGTCATCTCCTTCATGGCACAAGCAAGAGCAGTCAAGCACAATG
CCCCCCTATTCCGCCTCCTTCTCCTTCCCTTCCTCCTCCCCTTCCTCCCC
CTCATCCTCATTCTCCTCTTCCTCCCCCCTCTCCCCGCAAACCCAAATCC
GCAATATCGTCTCCTCTCCTGAGACGACCCTTCCCCTCCTCCTCTCCCTC
ATCGCCACACACGCCCCTCAGTCATATTTTGATGCCGAAAACGCCGCAGC
GGTGCTTAACAGACTAGGCCGGGAAGGAGGGAAGGAGACTGCCCAGCTGG
TGAAGGACCCGCGGTTGGGCCTGCTATTGACGAGGCTGCGGACGTTGGGG
GAAGGGATAGAGGGGGGAATTGAAGGGGGGGAGGAGGATGAGGGGGAGGA
GGAAGTGAGGGTGTTGCGGTTGATGAGGGAGAGGATGTGGACTCCGAAGG
CCTGTACTCTGATTTTAAACGGGCTGGGGAAAGTGTTCAGGCAAGGGGCA
GGGGGAGGAAGGGAGGGAGGGAGGGAGTGGGAGAGGAATGTGGCGATGCT
TCCGGAGCTCTCCACCCTCGTCAACGCCCTCGCCCGGCTCCTTCCCCCCT
CCCTTCCTCCCTTCTTCCTCCGCGACCTGGAGGCCCGCGCAGACGCCCTC
TTGTTCCACTGCCAGCCCCAAGATCTCGCCAACCTCATCCACGGCTTTGC
CAAGCTCCACCACGAACACGAGGGAGGGAAGGACGGCGAGGGAGGGAGGG
AGGGCGGGCCGGACAGCAGCGAAAGGGAGGGAGGGCGGGACAGAGGACAG
TGCTCCTTGCCCTTCCTTAGACGTTTCCAAGAAGCAGCAGCCACGCAAGC
GCAGTACTTCAAGCCCTTGGAGCTAGCCATGACAGTATATGGGCTCTCCC
ACCTCCTCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCGAGCCTTATTTC
TGCCCGACGTGGGCGCGGGCTTTCCTAAACCTTAGCGAGGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGACAGCAGGGCCTACGTGCGGGGGAGGTGG
TGATGTTCTTGAACGGTTTGGCGCGAATGGGGCACTGCCCTCCTCTTTCC
GAGCTACAGCAATATACCCGGAAGATCTTCTCCTGCATCCCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CAACCTTGTCCCTGAGTGTGTTTTCAGCGCATGAGCTGACGACGTTAGCG
CATGCTTGGGTCTTGTTCCGGGAAGGGGGGGAGGGAGGGAGGGAGGGCGG
GGAGGAGGACGAGGTGGGTGAGGTAGTAGGAGAAGTATTGGAAGCAGTGG
TAGCTGAGGCGGAGGGAAGGCTTGGGGAGTTTCAGGCGGGAGAAATTGCG
TCCCTAATCCACTCTCTGGGAAAAGCCCGATGTCCTCCCCCCGAGTCGTT
TCTGGTAACGGCCGTGGAACGGTTGGAGGCGTGCCTCGCCGAGGAGAGGG
AGGGAGGAAGTGAGGGAGGGAGGGATGGGGGAGTGTTGGGGCCGCGGGCG
GTGTGCAATCTGATGAGCGGGTGTGGGAAGTTGGGCTTCTATCCCGGCTT
GACGCTCGTGGAGGGGGTGAGGGAGGTATTGTTCGCACATCTCCCCCAAC
TCAACGCCCGTGACGTCATCGACATGTTGAGTGCATGGGCGGACCTGCAC
ACCTTATCCTCCTTCCCTCCCTCTTCCTCCTCGTCCTCCCCGTCTGCGTT
GGACAGTAGGATGGATGCGGCCCTTCTGGCCGTCCTTCTACCTATGGTCC
CTACTGTGGTGCTGGAGGAACAGCAGCCTTCCTCCCCCTCCCCCCTTCCT
TCCTCGGAGGGAGGACTGGTGCGTCTTCTCGGCGCTCTCTGGCGCCTTGA
GCCTGTTCTCTCTTCTCTTCCGCAAACGGAAGCGGAGGCCCTCCTCCCCG
CCCTCCCTCCCGATCTCACCCCCTACCGTTACTTGTCGTTGATTGACAAA
GTGCAGACGCGCCTCCTTGAGGTGACCTTGGGGGGAGGGAGGGAAGGAGG
GAGGGAGGGCGGGCGGGCGGGAAATTGGAAGGCAGGAGTTCGGGCGTTGG
GGGCCGTAGTGAGGCTGGCACTGGTGATGGAGGAGACGGGAGAGGGGGAG
GGCGGGGCAGAGGAAGGGGGGGGATGCAACAGTACCGAGCCTTTCTGCGG
GTGTTGGCGGAGGGGGTAA
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Synonyms
Publications