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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:218777..221712 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00500.1 vs.
Match: EWM25170.1 (hypothetical protein Naga_100490g1 [Nannochloropsis gaditana]) HSP 1 Score: 82.0 bits (201), Expect = 9.300e-12 Identity = 75/171 (43.86%), Postives = 93/171 (54.39%), Query Frame = 0
Query: 58 QMLLKRRREDEIEEHQQLQQRQPLPPSLKSSPSWHKQEQSSTMPPYSASFSFPSSSPSSPSSSFSSSSPLSPQTQIRNIVSSPETTLPLLLSLIATHAPQSYFDAENAAAVLNRLGREGGKETAQLVKDPRLGLLLTRLRTLGEGIE-----GGIEGGEEDE---GEEEVR 221
Q + RR E+E + + + LP SP H + S +AS S S SS SSS SSS P SP +R VSSP+T LP LLSL++ HA ++YFD E AAA LNRLG+E G+ + + KD L LL RL LGEG+E GG G ED GEE R
Sbjct: 109 QARVLRRGEEEEGGREGKEAFRALP-----SPLAHPKSPSLQ----TASLSHAPSLSSSSSSSSSSSPPQSPNAILRAAVSSPQTPLPFLLSLLSQHASRTYFDTETAAAFLNRLGKEQGRGLSVVRKDRGLQALLARLLILGEGVEDEGEAGGGRGAREDSLAPGEEMER 270
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00500.1 ID=NO11G00500.1|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp ATGAGGAGAAGAGCGAGATGCTCGCCCTGTGTCTTGCTGCTAGTCTCATC CTGCTGGGCGCTCTTCCACCTAGCACGGGCCTTCTGGCTACCGCAAGCGC GACTTTCTGCCCATGTTATTGATATGAGAAGAATCCCTGCGGACTGCTGC AGCAGCAGCAGAGAAGCAGTGCAGATGCTGCTAAAAAGAAGGAGAGAAGA TGAAATAGAGGAGCATCAGCAACTACAACAACGGCAACCGTTACCCCCCT CATTGAAGTCATCTCCTTCATGGCACAAGCAAGAGCAGTCAAGCACAATG CCCCCCTATTCCGCCTCCTTCTCCTTCCCTTCCTCCTCCCCTTCCTCCCC CTCATCCTCATTCTCCTCTTCCTCCCCCCTCTCCCCGCAAACCCAAATCC GCAATATCGTCTCCTCTCCTGAGACGACCCTTCCCCTCCTCCTCTCCCTC ATCGCCACACACGCCCCTCAGTCATATTTTGATGCCGAAAACGCCGCAGC GGTGCTTAACAGACTAGGCCGGGAAGGAGGGAAGGAGACTGCCCAGCTGG TGAAGGACCCGCGGTTGGGCCTGCTATTGACGAGGCTGCGGACGTTGGGG GAAGGGATAGAGGGGGGAATTGAAGGGGGGGAGGAGGATGAGGGGGAGGA GGAAGTGAGGGTGTTGCGGTTGATGAGGGAGAGGATGTGGACTCCGAAGG CCTGTACTCTGATTTTAAACGGGCTGGGGAAAGTGTTCAGGCAAGGGGCA GGGGGAGGAAGGGAGGGAGGGAGGGAGTGGGAGAGGAATGTGGCGATGCT TCCGGAGCTCTCCACCCTCGTCAACGCCCTCGCCCGGCTCCTTCCCCCCT CCCTTCCTCCCTTCTTCCTCCGCGACCTGGAGGCCCGCGCAGACGCCCTC TTGTTCCACTGCCAGCCCCAAGATCTCGCCAACCTCATCCACGGCTTTGC CAAGCTCCACCACGAACACGAGGGAGGGAAGGACGGCGAGGGAGGGAGGG AGGGCGGGCCGGACAGCAGCGAAAGGGAGGGAGGGCGGGACAGAGGACAG TGCTCCTTGCCCTTCCTTAGACGTTTCCAAGAAGCAGCAGCCACGCAAGC GCAGTACTTCAAGCCCTTGGAGCTAGCCATGACAGTATATGGGCTCTCCC ACCTCCTCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCGAGCCTTATTTC TGCCCGACGTGGGCGCGGGCTTTCCTAAACCTTAGCGAGGGGGAGGGAGG GAGGGAGGGAGGGAGGGAGGGACAGCAGGGCCTACGTGCGGGGGAGGTGG TGATGTTCTTGAACGGTTTGGCGCGAATGGGGCACTGCCCTCCTCTTTCC GAGCTACAGCAATATACCCGGAAGATCTTCTCCTGCATCCCTTCTTCTTC TTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CAACCTTGTCCCTGAGTGTGTTTTCAGCGCATGAGCTGACGACGTTAGCG CATGCTTGGGTCTTGTTCCGGGAAGGGGGGGAGGGAGGGAGGGAGGGCGG GGAGGAGGACGAGGTGGGTGAGGTAGTAGGAGAAGTATTGGAAGCAGTGG TAGCTGAGGCGGAGGGAAGGCTTGGGGAGTTTCAGGCGGGAGAAATTGCG TCCCTAATCCACTCTCTGGGAAAAGCCCGATGTCCTCCCCCCGAGTCGTT TCTGGTAACGGCCGTGGAACGGTTGGAGGCGTGCCTCGCCGAGGAGAGGG AGGGAGGAAGTGAGGGAGGGAGGGATGGGGGAGTGTTGGGGCCGCGGGCG GTGTGCAATCTGATGAGCGGGTGTGGGAAGTTGGGCTTCTATCCCGGCTT GACGCTCGTGGAGGGGGTGAGGGAGGTATTGTTCGCACATCTCCCCCAAC TCAACGCCCGTGACGTCATCGACATGTTGAGTGCATGGGCGGACCTGCAC ACCTTATCCTCCTTCCCTCCCTCTTCCTCCTCGTCCTCCCCGTCTGCGTT GGACAGTAGGATGGATGCGGCCCTTCTGGCCGTCCTTCTACCTATGGTCC CTACTGTGGTGCTGGAGGAACAGCAGCCTTCCTCCCCCTCCCCCCTTCCT TCCTCGGAGGGAGGACTGGTGCGTCTTCTCGGCGCTCTCTGGCGCCTTGA GCCTGTTCTCTCTTCTCTTCCGCAAACGGAAGCGGAGGCCCTCCTCCCCG CCCTCCCTCCCGATCTCACCCCCTACCGTTACTTGTCGTTGATTGACAAA GTGCAGACGCGCCTCCTTGAGGTGACCTTGGGGGGAGGGAGGGAAGGAGG GAGGGAGGGCGGGCGGGCGGGAAATTGGAAGGCAGGAGTTCGGGCGTTGG GGGCCGTAGTGAGGCTGGCACTGGTGATGGAGGAGACGGGAGAGGGGGAG GGCGGGGCAGAGGAAGGGGGGGGATGCAACAGTACCGAGCCTTTCTGCGG GTGTTGGCGGAGGGGGTAA back to topprotein sequence of NO11G00500.1 >NO11G00500.1-protein ID=NO11G00500.1-protein|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=823bp MRRRARCSPCVLLLVSSCWALFHLARAFWLPQARLSAHVIDMRRIPADCC SSSREAVQMLLKRRREDEIEEHQQLQQRQPLPPSLKSSPSWHKQEQSSTM PPYSASFSFPSSSPSSPSSSFSSSSPLSPQTQIRNIVSSPETTLPLLLSL IATHAPQSYFDAENAAAVLNRLGREGGKETAQLVKDPRLGLLLTRLRTLG EGIEGGIEGGEEDEGEEEVRVLRLMRERMWTPKACTLILNGLGKVFRQGA GGGREGGREWERNVAMLPELSTLVNALARLLPPSLPPFFLRDLEARADAL LFHCQPQDLANLIHGFAKLHHEHEGGKDGEGGREGGPDSSEREGGRDRGQ CSLPFLRRFQEAAATQAQYFKPLELAMTVYGLSHLLPFPPSLPPSLEPYF CPTWARAFLNLSEGEGGREGGREGQQGLRAGEVVMFLNGLARMGHCPPLS ELQQYTRKIFSCIPSSSSSSSSSSSSSSSSSSSSTLSLSVFSAHELTTLA HAWVLFREGGEGGREGGEEDEVGEVVGEVLEAVVAEAEGRLGEFQAGEIA SLIHSLGKARCPPPESFLVTAVERLEACLAEEREGGSEGGRDGGVLGPRA VCNLMSGCGKLGFYPGLTLVEGVREVLFAHLPQLNARDVIDMLSAWADLH TLSSFPPSSSSSSPSALDSRMDAALLAVLLPMVPTVVLEEQQPSSPSPLP SSEGGLVRLLGALWRLEPVLSSLPQTEAEALLPALPPDLTPYRYLSLIDK VQTRLLEVTLGGGREGGREGGRAGNWKAGVRALGAVVRLALVMEETGEGE GGAEEGGGCNSTEPFCGCWRRG* back to topmRNA from alignment at chr11:218777..221712- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00500.1 ID=NO11G00500.1|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2936bp|location=Sequence derived from alignment at chr11:218777..221712- (Nannochloropsis oceanica) ATGAGGAGAAGAGCGAGATGCTCGCCCTGTGTCTTGCTGCTAGGTAAGCA
TCGAGAGAGAGAGAGGGAGAGAGAGGGAGAGAGGGAGGTAAAGCGGGGGA
GCAAAGCCGGGGAAGCAAAATTAGGGGAGCAAAGCGTAATATGTGGTGAG
ATCATTGATATTCCCTACCAAGACCGTGGGCTTGTGCTGATCCATCTAAA
GTCACAAACTCCCCAACTTACCCACCTTCCGTTCGTCCCTCCCCCCTTCC
CTCCCTTCCTTCATCCCTCCCTCTCCTCCCTCCCCTCCCTCCGCTCTTCC
TCGCCCCCTCCCAAAGTCTCATCCTGCTGGGCGCTCTTCCACCTAGCACG
GGCCTTCTGGCTACCGCAAGCGCGACTTTCTGCCCATGTTATTGATATGA
GAAGAATCCCTGCGGACTGCTGCAGCAGCAGCAGAGAAGCAGTGCAGATG
CTGCTAAAAAGAAGGAGAGAAGATGAAATAGAGGAGCATCAGCAACTACA
ACAACGGCAACCGTTACCCCCCTCATTGAAGTCATCTCCTTCATGGCACA
AGCAAGAGCAGTCAAGCACAATGCCCCCCTATTCCGCCTCCTTCTCCTTC
CCTTCCTCCTCCCCTTCCTCCCCCTCATCCTCATTCTCCTCTTCCTCCCC
CCTCTCCCCGCAAACCCAAATCCGCAATATCGTCTCCTCTCCTGAGACGA
CCCTTCCCCTCCTCCTCTCCCTCATCGCCACACACGCCCCTCAGTCATAT
TTTGATGCCGAAAACGCCGCAGCGGTGCTTAACAGACTAGGCCGGGAAGG
AGGGAAGGAGACTGCCCAGCTGGTGAAGGACCCGCGGTTGGGCCTGCTAT
TGACGAGGCTGCGGACGTTGGGGGAAGGGATAGAGGGGGGAATTGAAGGG
GGGGAGGAGGATGAGGGGGAGGAGGAAGTGAGGGTGTTGCGGTTGATGAG
GGAGAGGATGTGGACTCCGAAGGCCTGTACTCTGATTTTAAACGGGCTGG
GGAAAGTGTTCAGGCAAGGGGCAGGGGGAGGAAGGGAGGGAGGGAGGGAG
TGGGAGAGGAATGTGGCGATGCTTCCGGGTATTGTAGGATTCGTTACGGC
GTGTCTGACACGACAGGCCGAAGCCCTGAGTCCTCGTCATGTCGCCCTCT
CCCTCAATGCCCTCGCAAAACTCCAAGACAACGGCCTCCCCCTCTCCCCC
TCCCTCCTGTCCGCCTTCCTTCCAACCCTCCTCCACCGCTCCCACGACAT
TCTCTACCTCTTCCCCCCCAAGAGCTCTCCACCCTCGTCAACGCCCTCGC
CCGGCTCCTTCCCCCCTCCCTTCCTCCCTTCTTCCTCCGCGACCTGGAGG
CCCGCGCAGACGCCCTCTTGTTCCACTGCCAGCCCCAAGATCTCGCCAAC
CTCATCCACGGCTTTGCCAAGCTCCACCACGAACACGAGGGAGGGAAGGA
CGGCGAGGGAGGGAGGGAGGGCGGGCCGGACAGCAGCGAAAGGGAGGGAG
GGCGGGACAGAGGACAGTGCTCCTTGCCCTTCCTTAGACGTTTCCAAGAA
GCAGCAGCCACGCAAGCGCAGTACTTCAAGCCCTTGGAGCTAGCCATGAC
AGTATATGGGCTCTCCCACCTCCTCCCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCGAGCCTTATTTCTGCCCGACGTGGGCGCGGGCTTTCCTAAACCTT
AGCGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACAGCAGGGCCT
ACGTGCGGGGGAGGTGGTGATGTTCTTGAACGGTTTGGCGCGAATGGGGC
ACTGCCCTCCTCTTTCCGAGCTACAGCAATATACCCGGAAGATCTTCTCC
TGCATCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCAACCTTGTCCCTGAGTGTGTTTTCAGCGCATG
AGCTGACGACGTTAGCGCATGCTTGGGTCTTGTTCCGGGAAGGGGGGGAG
GGAGGGAGGGAGGGCGGGGAGGAGGACGAGGTGGGTGAGGTAGTAGGAGA
AGTATTGGAAGCAGTGGTAGCTGAGGCGGAGGGAAGGCTTGGGGAGTTTC
AGGCGGGAGAAATTGCGTCCCTAATCCACTCTCTGGGAAAAGCCCGATGT
CCTCCCCCCGAGTCGTTTCTGGTAACGGCCGTGGAACGGTTGGAGGCGTG
CCTCGCCGAGGAGAGGGAGGGAGGAAGTGAGGGAGGGAGGGATGGGGGAG
TGTTGGGGCCGCGGGCGGTGTGCAATCTGATGAGCGGGTGTGGGAAGTTG
GGCTTCTATCCCGGCTTGACGCTCGTGGAGGGGGTGAGGGAGGTATTGTT
CGCACATCTCCCCCAACTCAACGCCCGTGACGTCATCGACATGTTGAGTG
CATGGGCGGACCTGCACACCTTATCCTCCTTCCCTCCCTCTTCCTCCTCG
TCCTCCCCGTCTGCGTTGGACAGTAGGATGGATGCGGCCCTTCTGGCCGT
CCTTCTACCTATGGTCCCTACTGTGGTGCTGGAGGAACAGCAGCCTTCCT
CCCCCTCCCCCCTTCCTTCCTCGGAGGGAGGACTGGTGCGTCTTCTCGGC
GCTCTCTGGCGCCTTGAGCCTGTTCTCTCTTCTCTTCCGCAAACGGAAGC
GGAGGCCCTCCTCCCCGCCCTCCCTCCCGATCTCACCCCCTACCGTTACT
TGTCGTTGATTGACAAAGTGCAGACGCGCCTCCTTGAGGTGACCTTGGGG
GGAGGGAGGGAAGGAGGGAGGGAGGGCGGGCGGGCGGGAAATTGGAAGGC
AGGAGTTCGGGCGTTGGGGGCCGTAGTGAGGCTGGCACTGGTGATGGAGG
AGACGGGAGAGGGGGAGGGCGGGGCAGAGGAAGGGGGGGGATGCAACAGT
ACCGAGCCTTTCTGCGGGTGTTGGCGGAGGGGGTAA back to topCoding sequence (CDS) from alignment at chr11:218777..221712- >NO11G00500.1 ID=NO11G00500.1|Name=NO11G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=2469bp|location=Sequence derived from alignment at chr11:218777..221712- (Nannochloropsis oceanica) ATGAGGAGAAGAGCGAGATGCTCGCCCTGTGTCTTGCTGCTAGTCTCATC CTGCTGGGCGCTCTTCCACCTAGCACGGGCCTTCTGGCTACCGCAAGCGC GACTTTCTGCCCATGTTATTGATATGAGAAGAATCCCTGCGGACTGCTGC AGCAGCAGCAGAGAAGCAGTGCAGATGCTGCTAAAAAGAAGGAGAGAAGA TGAAATAGAGGAGCATCAGCAACTACAACAACGGCAACCGTTACCCCCCT CATTGAAGTCATCTCCTTCATGGCACAAGCAAGAGCAGTCAAGCACAATG CCCCCCTATTCCGCCTCCTTCTCCTTCCCTTCCTCCTCCCCTTCCTCCCC CTCATCCTCATTCTCCTCTTCCTCCCCCCTCTCCCCGCAAACCCAAATCC GCAATATCGTCTCCTCTCCTGAGACGACCCTTCCCCTCCTCCTCTCCCTC ATCGCCACACACGCCCCTCAGTCATATTTTGATGCCGAAAACGCCGCAGC GGTGCTTAACAGACTAGGCCGGGAAGGAGGGAAGGAGACTGCCCAGCTGG TGAAGGACCCGCGGTTGGGCCTGCTATTGACGAGGCTGCGGACGTTGGGG GAAGGGATAGAGGGGGGAATTGAAGGGGGGGAGGAGGATGAGGGGGAGGA GGAAGTGAGGGTGTTGCGGTTGATGAGGGAGAGGATGTGGACTCCGAAGG CCTGTACTCTGATTTTAAACGGGCTGGGGAAAGTGTTCAGGCAAGGGGCA GGGGGAGGAAGGGAGGGAGGGAGGGAGTGGGAGAGGAATGTGGCGATGCT TCCGGAGCTCTCCACCCTCGTCAACGCCCTCGCCCGGCTCCTTCCCCCCT CCCTTCCTCCCTTCTTCCTCCGCGACCTGGAGGCCCGCGCAGACGCCCTC TTGTTCCACTGCCAGCCCCAAGATCTCGCCAACCTCATCCACGGCTTTGC CAAGCTCCACCACGAACACGAGGGAGGGAAGGACGGCGAGGGAGGGAGGG AGGGCGGGCCGGACAGCAGCGAAAGGGAGGGAGGGCGGGACAGAGGACAG TGCTCCTTGCCCTTCCTTAGACGTTTCCAAGAAGCAGCAGCCACGCAAGC GCAGTACTTCAAGCCCTTGGAGCTAGCCATGACAGTATATGGGCTCTCCC ACCTCCTCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCGAGCCTTATTTC TGCCCGACGTGGGCGCGGGCTTTCCTAAACCTTAGCGAGGGGGAGGGAGG GAGGGAGGGAGGGAGGGAGGGACAGCAGGGCCTACGTGCGGGGGAGGTGG TGATGTTCTTGAACGGTTTGGCGCGAATGGGGCACTGCCCTCCTCTTTCC GAGCTACAGCAATATACCCGGAAGATCTTCTCCTGCATCCCTTCTTCTTC TTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CAACCTTGTCCCTGAGTGTGTTTTCAGCGCATGAGCTGACGACGTTAGCG CATGCTTGGGTCTTGTTCCGGGAAGGGGGGGAGGGAGGGAGGGAGGGCGG GGAGGAGGACGAGGTGGGTGAGGTAGTAGGAGAAGTATTGGAAGCAGTGG TAGCTGAGGCGGAGGGAAGGCTTGGGGAGTTTCAGGCGGGAGAAATTGCG TCCCTAATCCACTCTCTGGGAAAAGCCCGATGTCCTCCCCCCGAGTCGTT TCTGGTAACGGCCGTGGAACGGTTGGAGGCGTGCCTCGCCGAGGAGAGGG AGGGAGGAAGTGAGGGAGGGAGGGATGGGGGAGTGTTGGGGCCGCGGGCG GTGTGCAATCTGATGAGCGGGTGTGGGAAGTTGGGCTTCTATCCCGGCTT GACGCTCGTGGAGGGGGTGAGGGAGGTATTGTTCGCACATCTCCCCCAAC TCAACGCCCGTGACGTCATCGACATGTTGAGTGCATGGGCGGACCTGCAC ACCTTATCCTCCTTCCCTCCCTCTTCCTCCTCGTCCTCCCCGTCTGCGTT GGACAGTAGGATGGATGCGGCCCTTCTGGCCGTCCTTCTACCTATGGTCC CTACTGTGGTGCTGGAGGAACAGCAGCCTTCCTCCCCCTCCCCCCTTCCT TCCTCGGAGGGAGGACTGGTGCGTCTTCTCGGCGCTCTCTGGCGCCTTGA GCCTGTTCTCTCTTCTCTTCCGCAAACGGAAGCGGAGGCCCTCCTCCCCG CCCTCCCTCCCGATCTCACCCCCTACCGTTACTTGTCGTTGATTGACAAA GTGCAGACGCGCCTCCTTGAGGTGACCTTGGGGGGAGGGAGGGAAGGAGG GAGGGAGGGCGGGCGGGCGGGAAATTGGAAGGCAGGAGTTCGGGCGTTGG GGGCCGTAGTGAGGCTGGCACTGGTGATGGAGGAGACGGGAGAGGGGGAG GGCGGGGCAGAGGAAGGGGGGGGATGCAACAGTACCGAGCCTTTCTGCGG GTGTTGGCGGAGGGGGTAA back to top
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