NO11G00320.2, NO11G00320.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00320.2
Unique NameNO11G00320.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2837
Alignment locationchr11:137271..140429 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:137271..140429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00320.2 vs.
Match: EWM25571.1 (wsc domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 1.500e-48
Identity = 137/314 (43.63%), Postives = 175/314 (55.73%), Query Frame = 0 
Query:  285 EAEENEVEMEEMHKEKQGKKKKGH------------DAMEEELEEA--DDDSDDDDFFGAMETEEEEEEERLSKMEGKVIKKGEETEKKKVEKQKGR----GKTLKTQDDALSSKRESVNVSRGHSG---------TAARTGEGKMSAE------PSLVECRGSYGNRRFLNEDEKALPPILYSFPGSGNTWTRYLIDISTGVYSGTVFTRPNSSTAKLPGQGQCHQRVSVIKAHPNHFTPDQLFYISPDSERTGHCNRNGQINGFKRFILLTRNPFDAIWSEYRRTVT-THIITRDAFDFAAFADVAVSKLSR 565
            + EE     +E  KE+  K + G             + +EEE E     DD +++DF      ++E  EE   K EG V +K EE  +K +E +K R    GK  +      S ++ +   S+  SG         T    G GK          P+L EC+ SY  RRFL+E+E+ +PPILYSFPGSGNTWTR LIDISTGV+SGT+  +     +K  GQG C +RVSV+KAHPNHF P++LF +      TG CN  G I  F+RFILL RNPFDAIWSEYRRT T  H    D FD  AFA VA+SK+SR
Sbjct:  126 DVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTV------TGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSR 433
The following BLAST results are available for this feature:
BLAST of NO11G00320.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25571.11.500e-4843.63wsc domain containing 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00320NO11G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00320.2NO11G00320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00320.2.cds1NO11G00320.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00320.2.cds2NO11G00320.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00320.2.cds3NO11G00320.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00320.2.cds4NO11G00320.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00320.2 ID=NO11G00320.2|Name=NO11G00320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2837bp
CGGGGAGGTACAGCACGCTGCACGTCAAGTTGCTTAGTGGTGACCATGTT
ACACTTGATATCTGCTTCTCTTTCGCACCACCAATGTCGACCTGTCTGTC
TACTGTCATATTACACTGAGGGCTGCTTTCCCTTGGGGCGTATGAGTTCT
GCTCTTGCCTCCAAAGCCAGCTTTTTTTGAAAACAAGTCCTGACGCTGGG
AGCCCCATAAACGGGCCTCTCAAGCCCACCCACAACCTCACGCAGGGATC
CCCTCTTCTTGGTGGCTTGCTATTGACAGCAGCCTTTCAAGACCTGGGCG
ACGAAGAGGGAGGGCAATGGGCAAAACCAGCAAGCCTCGTCGCCGCAAGA
CGGAGCTTATTCGCATTGCCATCGCGTCGGCGGCCATCACCTGCGTCGGC
ATCACGCTGTGGTACAACAAGAGGACGCCATCCTCCTTCAAACAATGGGG
TCTTTACATTCCTGGTACTGTCGTTGTCACACCTGTTCATGAAGCGCCTC
CTAATTCGTCGTTTCAGCCGTCGGAAGCTGATCTGCCGAGTGGCAGTTTT
CCATCGTCGGACTCATCTGTCTCGCAGGAAGAGAAGGCCAGCCACTTATC
GGTACGTGAGGGACTTGATGCTGTCAAGACGATGCCTTCAGATCCGTTCA
TCAATGAACGGCGTGAGGAGGAAGAAGTGTTCATGGACAAGATGGCTGTC
AAGGGGACTGATAAGGCAGACTTCGGTAAAGATCGGAACCAGGAAGCGAG
CGGAGATGGGCAGCCGCAGAACCGAGATAAAGAAAGCGAGAGAGCGATTA
TCGGGGAATTGGAAAAAAGCAATGAGCATGATGATGACGACTTTTTGTTC
AAAGAAACAGAGGAGGATGAGGAAGAGATGGAACAGGGGGATGAGGAATA
TAACACTATTGAAGAATTCGAAGGTGATGATGACCATGATGACGATGACG
ACTTCTTGTTCGGAGAATCAAAGGAGAATGAAGAATATAAAATCACGGGA
AAATTAGGAGAAGGTGATGATAACCATGATGACGATGACGTTTTGTTCGA
AGAAACGGAGGAGAATGAAGTAGAAATGGAGGAAGTGGATGAGGAATATA
ACGCTATCGAAGACTTGGAAGGTGATGATGACCTTGATTACTCTGAAGAA
GATGACTTCTTGTTCGAAGAAGCGGAGGAGAATGAAGTAGAGATGGAGGA
GATGCATAAGGAAAAGCAAGGGAAGAAAAAAAAGGGACATGATGCTATGG
AAGAAGAGTTGGAAGAGGCAGATGATGACAGTGATGACGACGACTTTTTC
GGAGCAATGGAGACGGAGGAGGAGGAGGAGGAGGAGAGGTTGAGTAAGAT
GGAGGGTAAGGTGATCAAGAAGGGAGAGGAGACTGAGAAAAAAAAAGTGG
AAAAACAAAAAGGGAGAGGGAAAACTTTGAAGACGCAAGACGACGCACTG
TCATCAAAGAGGGAAAGCGTAAATGTGTCACGTGGTCACTCAGGCACGGC
CGCCAGAACCGGAGAGGGAAAGATGTCGGCCGAACCTTCACTAGTCGAAT
GCCGAGGGAGCTACGGGAACCGACGTTTTCTAAACGAAGATGAGAAGGCT
CTACCCCCCATTCTATACAGTTTCCCAGGAAGTGGGAACACGTGGACTCG
TTACCTCATCGATATAAGCACGGGGGTTTATTCAGGCACGGTCTTCACAA
GGCCGAATTCATCGACAGCAAAACTACCCGGACAGGGCCAATGTCATCAA
AGGGTCAGTGTCATCAAGGCCCATCCTAATCATTTTACTCCTGACCAGCT
TTTCTATATATCGCCCGACAGTGAGAGAACCGGTCATTGTAACCGTAACG
GCCAGATAAACGGCTTCAAACGATTTATTTTGCTGACGCGCAATCCATTT
GACGCCATTTGGAGCGAATATCGAAGGACTGTAACGACGCATATAATCAC
TCGCGATGCCTTTGACTTCGCTGCATTCGCCGATGTCGCGGTGTCCAAAT
TATCACGTAAGTAAGCGTATCCCGTGCGTTCACCAATTTGTTTGCCCATA
ATGTGGAAGGAAATAATCTCACCATACTGTGGGGCAAAACACGTTATGGC
GATGACATTGGGGCGAGAAGTGTCGAAGGTATCAACCACTCATAAAGAAG
GTTTCACAAACGACCCCTACTTCTACCCACACGCGCCCAGGCCAATACAA
AGAGATGGTCATGTATTTCAGGGAGGTTCGCCGGGCGCTACCCAAGGAGG
ACATTTTCTCCATTGAATATGAAAACATGCTTGATAAAGATTTGCGCCTG
AGCATACTGTCGAGGATGATACATTTCATCGGTAAGCAAACATGGGATTT
ATCATTCCTTTGTGTGACCATCTCTCCAGGGTGTCAGGGCGGGAACACTT
TTATCTCCACATCAGCTTCAAAACTGTTTTGGCCTTTTAATTTCTTCTGT
GTCTGACGTTCCATCCCACCATCACCCAGGACTCAATGAAAAGGAACGAC
CGAAGGATCTCCGTCGTCGCCTGCAGTGCTCGTTTGTCCTCGCCGAGAAC
GAGGGCGGTGGTCGACGTGGCAACAAAAAAGTAAAAGAGTTTGATAGGAG
TCAAATAATGACAACAAGTGATGTGTATCCGCCAGAGGTTGCGTGTCGTA
TGTGGGCGATTTTCGGTCCCGAAGCCACAACTCTCGGATACACTTTGCCG
AACGGAATCACGGAAGCGGAATGCAAAATGTTCAAGGCAGAGAAATAAAA
GCGCTTACACTGCTCAATTTTTCCAAATTAATAATCAACAAACAACAATC
ATAAAAGTAGAGTTGAATTAATTGCAATGTACAGATG
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protein sequence of NO11G00320.2

>NO11G00320.2-protein ID=NO11G00320.2-protein|Name=NO11G00320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MGKTSKPRRRKTELIRIAIASAAITCVGITLWYNKRTPSSFKQWGLYIPG
TVVVTPVHEAPPNSSFQPSEADLPSGSFPSSDSSVSQEEKASHLSVREGL
DAVKTMPSDPFINERREEEEVFMDKMAVKGTDKADFGKDRNQEASGDGQP
QNRDKESERAIIGELEKSNEHDDDDFLFKETEEDEEEMEQGDEEYNTIEE
FEGDDDHDDDDDFLFGESKENEEYKITGKLGEGDDNHDDDDVLFEETEEN
EVEMEEVDEEYNAIEDLEGDDDLDYSEEDDFLFEEAEENEVEMEEMHKEK
QGKKKKGHDAMEEELEEADDDSDDDDFFGAMETEEEEEEERLSKMEGKVI
KKGEETEKKKVEKQKGRGKTLKTQDDALSSKRESVNVSRGHSGTAARTGE
GKMSAEPSLVECRGSYGNRRFLNEDEKALPPILYSFPGSGNTWTRYLIDI
STGVYSGTVFTRPNSSTAKLPGQGQCHQRVSVIKAHPNHFTPDQLFYISP
DSERTGHCNRNGQINGFKRFILLTRNPFDAIWSEYRRTVTTHIITRDAFD
FAAFADVAVSKLSRK*
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mRNA from alignment at chr11:137271..140429+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00320.2 ID=NO11G00320.2|Name=NO11G00320.2|organism=Nannochloropsis oceanica|type=mRNA|length=3159bp|location=Sequence derived from alignment at chr11:137271..140429+ (Nannochloropsis oceanica)
CGGGGAGGTACAGCACGCTGCACGTCAAGTTGCTTAGTGGTGACCATGTT
ACACTTGATATCTGCTTCTCTTTCGCACCACCAATGTCGACCTGTCTGTC
TACTGTCATATTACACTGAGGGCTGCTTTCCCTTGGGGCGTATGAGTTCT
GCTCTTGCCTCCAAAGCCAGCTTTTTTTGAAAACAAGTCCTGACGCTGGG
AGCCCCATAAACGGGCCTCTCAAGCCCACCCACAACCTCACGCAGGGATC
CCCTCTTCTTGGTGGCTTGCTATTGACAGCAGCCTTTCAAGACCTGGGCG
ACGAAGAGGGAGGGCAATGGGCAAAACCAGCAAGCCTCGTCGCCGCAAGA
CGGAGCTTATTCGCATTGCCATCGCGTCGGCGGCCATCACCTGCGTCGGC
ATCACGCTGTGGTACAACAAGAGGACGCCATCCTCCTTCAAACAATGGGG
TCTTTACATTCCTGGTACTGTCGTTGTCACACCTGTTCATGAAGCGCCTC
CTAATTCGTCGTTTCAGCCGTCGGAAGCTGATCTGCCGAGTGGCAGTTTT
CCATCGTCGGACTCATCTGTCTCGCAGGAAGAGAAGGCCAGCCACTTATC
GGTACGTGAGGGACTTGATGCTGTCAAGACGATGCCTTCAGATCCGTTCA
TCAATGAACGGCGTGAGGAGGAAGAAGTGTTCATGGACAAGATGGCTGTC
AAGGGGACTGATAAGGCAGACTTCGGTAAAGATCGGAACCAGGAAGCGAG
CGGAGATGGGCAGCCGCAGAACCGAGATAAAGAAAGCGAGAGAGCGATTA
TCGGGGAATTGGAAAAAAGCAATGAGCATGATGATGACGACTTTTTGTTC
AAAGAAACAGAGGAGGATGAGGAAGAGATGGAACAGGGGGATGAGGAATA
TAACACTATTGAAGAATTCGAAGGTGATGATGACCATGATGACGATGACG
ACTTCTTGTTCGGAGAATCAAAGGAGAATGAAGAATATAAAATCACGGGA
AAATTAGGAGAAGGTGATGATAACCATGATGACGATGACGTTTTGTTCGA
AGAAACGGAGGAGAATGAAGTAGAAATGGAGGAAGTGGATGAGGAATATA
ACGCTATCGAAGACTTGGAAGGTGATGATGACCTTGATTACTCTGAAGAA
GATGACTTCTTGTTCGAAGAAGCGGAGGAGAATGAAGTAGAGATGGAGGA
GATGCATAAGGAAAAGCAAGGGAAGAAAAAAAAGGGACATGATGCTATGG
AAGAAGAGTTGGAAGAGGCAGATGATGACAGTGATGACGACGACTTTTTC
GGAGCAATGGAGACGGAGGAGGAGGAGGAGGAGGAGAGGTTGAGTAAGAT
GGAGGGTAAGGTGATCAAGAAGGGAGAGGAGACTGAGAAAAAAAAAGTGG
AAAAACAAAAAGGGAGAGGGAAAACTTTGAAGACGCAAGACGACGCACTG
TCATCAAAGAGGGAAAGCGTAAATGTGTCACGTGGTCACTCAGGCACGGC
CGCCAGAACCGGAGAGGGAAAGATGTCGGCCGAACCTTCACTAGTCGAAT
GCCGAGGGAGCTACGGGAACCGACGTTTTCTAAACGAAGATGAGAAGGCT
CTACCCCCCATTCTATACAGTTTCCCAGGTAAATTACCGTCTGAAATTAA
TAACAAATGCATCTTTTCATAGTTGACGAGTTCCTTAAGCATGCACATAC
TCACAAATGCATATCCTCATTACTGACGAATCCCTAAAACATACACAGGA
AGTGGGAACACGTGGACTCGTTACCTCATCGATATAAGCACGGGGGTTTA
TTCAGGCACGGTCTTCACAAGGCCGAATTCATCGACAGCAAAACTACCCG
GACAGGGCCAATGTCATCAAAGGGTAAGTCAAGTTTTCCATTGCTCCCTC
TGACCACTGGCATACGTTTCCATGCCTTTCTAACCGAGGCCTCTCTCTCC
AAATCACGTAGGTCAGTGTCATCAAGGCCCATCCTAATCATTTTACTCCT
GACCAGCTTTTCTATATATCGCCCGACAGTGAGAGAACCGGTAAGTCTTT
TTGGTTCTAAAAGGTCTTCCTGCGTATTTGTGGGAATCGAAACGGAGGGA
TGTACGTGGGGGATGACAAGGCTAATCAATTATTTTCCCACAACCTGCGT
GTAGGTCATTGTAACCGTAACGGCCAGATAAACGGCTTCAAACGATTTAT
TTTGCTGACGCGCAATCCATTTGACGCCATTTGGAGCGAATATCGAAGGA
CTGTAACGACGCATATAATCACTCGCGATGCCTTTGACTTCGCTGCATTC
GCCGATGTCGCGGTGTCCAAATTATCACGTAAGTAAGCGTATCCCGTGCG
TTCACCAATTTGTTTGCCCATAATGTGGAAGGAAATAATCTCACCATACT
GTGGGGCAAAACACGTTATGGCGATGACATTGGGGCGAGAAGTGTCGAAG
GTATCAACCACTCATAAAGAAGGTTTCACAAACGACCCCTACTTCTACCC
ACACGCGCCCAGGCCAATACAAAGAGATGGTCATGTATTTCAGGGAGGTT
CGCCGGGCGCTACCCAAGGAGGACATTTTCTCCATTGAATATGAAAACAT
GCTTGATAAAGATTTGCGCCTGAGCATACTGTCGAGGATGATACATTTCA
TCGGTAAGCAAACATGGGATTTATCATTCCTTTGTGTGACCATCTCTCCA
GGGTGTCAGGGCGGGAACACTTTTATCTCCACATCAGCTTCAAAACTGTT
TTGGCCTTTTAATTTCTTCTGTGTCTGACGTTCCATCCCACCATCACCCA
GGACTCAATGAAAAGGAACGACCGAAGGATCTCCGTCGTCGCCTGCAGTG
CTCGTTTGTCCTCGCCGAGAACGAGGGCGGTGGTCGACGTGGCAACAAAA
AAGTAAAAGAGTTTGATAGGAGTCAAATAATGACAACAAGTGATGTGTAT
CCGCCAGAGGTTGCGTGTCGTATGTGGGCGATTTTCGGTCCCGAAGCCAC
AACTCTCGGATACACTTTGCCGAACGGAATCACGGAAGCGGAATGCAAAA
TGTTCAAGGCAGAGAAATAAAAGCGCTTACACTGCTCAATTTTTCCAAAT
TAATAATCAACAAACAACAATCATAAAAGTAGAGTTGAATTAATTGCAAT
GTACAGATG
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Coding sequence (CDS) from alignment at chr11:137271..140429+

>NO11G00320.2 ID=NO11G00320.2|Name=NO11G00320.2|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at chr11:137271..140429+ (Nannochloropsis oceanica)
ATGGGCAAAACCAGCAAGCCTCGTCGCCGCAAGACGGAGCTTATTCGCAT
TGCCATCGCGTCGGCGGCCATCACCTGCGTCGGCATCACGCTGTGGTACA
ACAAGAGGACGCCATCCTCCTTCAAACAATGGGGTCTTTACATTCCTGGT
ACTGTCGTTGTCACACCTGTTCATGAAGCGCCTCCTAATTCGTCGTTTCA
GCCGTCGGAAGCTGATCTGCCGAGTGGCAGTTTTCCATCGTCGGACTCAT
CTGTCTCGCAGGAAGAGAAGGCCAGCCACTTATCGGTACGTGAGGGACTT
GATGCTGTCAAGACGATGCCTTCAGATCCGTTCATCAATGAACGGCGTGA
GGAGGAAGAAGTGTTCATGGACAAGATGGCTGTCAAGGGGACTGATAAGG
CAGACTTCGGTAAAGATCGGAACCAGGAAGCGAGCGGAGATGGGCAGCCG
CAGAACCGAGATAAAGAAAGCGAGAGAGCGATTATCGGGGAATTGGAAAA
AAGCAATGAGCATGATGATGACGACTTTTTGTTCAAAGAAACAGAGGAGG
ATGAGGAAGAGATGGAACAGGGGGATGAGGAATATAACACTATTGAAGAA
TTCGAAGGTGATGATGACCATGATGACGATGACGACTTCTTGTTCGGAGA
ATCAAAGGAGAATGAAGAATATAAAATCACGGGAAAATTAGGAGAAGGTG
ATGATAACCATGATGACGATGACGTTTTGTTCGAAGAAACGGAGGAGAAT
GAAGTAGAAATGGAGGAAGTGGATGAGGAATATAACGCTATCGAAGACTT
GGAAGGTGATGATGACCTTGATTACTCTGAAGAAGATGACTTCTTGTTCG
AAGAAGCGGAGGAGAATGAAGTAGAGATGGAGGAGATGCATAAGGAAAAG
CAAGGGAAGAAAAAAAAGGGACATGATGCTATGGAAGAAGAGTTGGAAGA
GGCAGATGATGACAGTGATGACGACGACTTTTTCGGAGCAATGGAGACGG
AGGAGGAGGAGGAGGAGGAGAGGTTGAGTAAGATGGAGGGTAAGGTGATC
AAGAAGGGAGAGGAGACTGAGAAAAAAAAAGTGGAAAAACAAAAAGGGAG
AGGGAAAACTTTGAAGACGCAAGACGACGCACTGTCATCAAAGAGGGAAA
GCGTAAATGTGTCACGTGGTCACTCAGGCACGGCCGCCAGAACCGGAGAG
GGAAAGATGTCGGCCGAACCTTCACTAGTCGAATGCCGAGGGAGCTACGG
GAACCGACGTTTTCTAAACGAAGATGAGAAGGCTCTACCCCCCATTCTAT
ACAGTTTCCCAGGAAGTGGGAACACGTGGACTCGTTACCTCATCGATATA
AGCACGGGGGTTTATTCAGGCACGGTCTTCACAAGGCCGAATTCATCGAC
AGCAAAACTACCCGGACAGGGCCAATGTCATCAAAGGGTCAGTGTCATCA
AGGCCCATCCTAATCATTTTACTCCTGACCAGCTTTTCTATATATCGCCC
GACAGTGAGAGAACCGGTCATTGTAACCGTAACGGCCAGATAAACGGCTT
CAAACGATTTATTTTGCTGACGCGCAATCCATTTGACGCCATTTGGAGCG
AATATCGAAGGACTGTAACGACGCATATAATCACTCGCGATGCCTTTGAC
TTCGCTGCATTCGCCGATGTCGCGGTGTCCAAATTATCACGTAAGTAA
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Synonyms
Publications