NO11G00290.1, NO11G00290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00290.1
Unique Name	NO11G00290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1206
Alignment location	chr11:122844..125492 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:122844..125492 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO11G00290.1 vs.
Match: EWM25194.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana])

HSP 1 Score: 545.4 bits (1404), Expect = 1.200e-151
Identity = 262/320 (81.88%), Postives = 290/320 (90.62%), Query Frame = 0

Query:    1 MATAGLAYTKGRVVGKGTWGSVCLGTVSKTGRKVAIKEIHRSMERYEDGVNFSVLREIKVLMELKHTNIVELLDVRVTEDGLELVLDYCETNLKRVVEDRRLVKAIRYEDTKGFMQQLLRGLHFLHSNWILHRDLKPDNILLTAKGVLKIADFGLARYFGNPNETLSPGFQVITRQYRPPELLLGSRLYGPAVDIWSVGCIMGEVRLRELLFRGDVDTDIAQLAKIFQILGTPTEANWPGYTALPDYPRYNITPQPPPELARLLPSCRPDELDLLQKLVSLDPNARLTAQEALDHGYFRAEPRATPPSQLPLPLEGKGGV 321
            MA + L+Y+KG VVGKGTWGSV LGT+ K+GRKVAIKEIHRSMERYEDGVNFSVLREIK+LMELKH ++VEL DVRVT DGLELVL+YCET+LKRVVEDRR VKAIRYED KG MQQLLRG+HFLHSNWILHRDLKPDNIL+TA+G+LKIADFGLARYFGNPNETLSPG QVITRQYRPPELLLGSR+YGP VD+WS+GCIMGE+RLRELLFRGD DTD++QLAKIFQ+LGTPT+A WP YT LPDYPRY+ITPQP P+LARLLPS R +EL LLQKL+SLDPN R TA+EALD  YFR EPRATPP  LPLPLE +G V
Sbjct:    1 MAGSALSYSKGAVVGKGTWGSVRLGTIEKSGRKVAIKEIHRSMERYEDGVNFSVLREIKILMELKHRHVVELFDVRVTADGLELVLEYCETDLKRVVEDRRRVKAIRYEDAKGIMQQLLRGMHFLHSNWILHRDLKPDNILITAQGILKIADFGLARYFGNPNETLSPGMQVITRQYRPPELLLGSRVYGPPVDMWSIGCIMGEIRLRELLFRGDEDTDVSQLAKIFQVLGTPTDATWPWYTTLPDYPRYHITPQPVPDLARLLPSLRAEELALLQKLISLDPNRRPTAEEALDFDYFRVEPRATPPINLPLPLEEEGRV 320

The following BLAST results are available for this feature:

BLAST of NO11G00290.1 vs.

BLAST of NO11G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25194.1	1.200e-151	81.88	Protein kinase, ATP binding site [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00290	NO11G00290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00290.1	NO11G00290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00290.1.cds1	NO11G00290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00290.1.cds2	NO11G00290.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00290.1.cds3	NO11G00290.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00290.1.cds4	NO11G00290.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00290.1.cds5	NO11G00290.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00290.1.cds6	NO11G00290.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:122844..125492-
coding sequence from alignment at chr11:122844..125492-

mRNA sequence

>NO11G00290.1 ID=NO11G00290.1|Name=NO11G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
CAGGTCGGCGCTCCTGAGGACGCAATTTTGTGTGGCAAGGGCGTTGGCCC
AGCCCTACGAGAGAGGAGGTCGACCCTTGAGACCGACTCGAGACCCCTCC
TCCATATCTCCCCGTCTGTAATCAAGGCAGCGATGGCAACCGCCGGCCTT
GCATACACCAAAGGCCGGGTGGTGGGCAAGGGTACTTGGGGCAGTGTCTG
CTTGGGCACGGTCAGCAAGACGGGGCGGAAGGTGGCCATCAAAGAGATCC
ACCGTTCCATGGAGAGATACGAGGACGGAGTCAACTTCTCGGTCCTGCGC
GAGATCAAGGTGTTGATGGAACTCAAGCACACCAACATCGTGGAGTTACT
CGATGTCCGCGTCACGGAGGACGGGCTCGAACTTGTCTTGGATTACTGCG
AGACAAACCTGAAGCGGGTTGTAGAGGACCGCCGCTTGGTCAAGGCAATT
CGGTATGAGGATACCAAAGGCTTCATGCAGCAGCTATTGCGGGGCCTCCA
CTTCCTCCACTCCAACTGGATCTTGCATCGAGATCTCAAACCAGATAACA
TCCTGCTCACAGCCAAGGGTGTTCTTAAGATCGCGGATTTCGGCCTCGCG
CGTTATTTTGGGAACCCCAACGAGACCCTCTCCCCTGGCTTTCAAGTCAT
TACTCGGCAGTATCGACCGCCCGAGCTTCTGTTAGGCAGTCGATTGTATG
GCCCCGCAGTGGATATATGGTCGGTGGGTTGTATCATGGGAGAGGTCCGA
TTGCGCGAGTTGCTGTTCCGCGGAGATGTGGACACGGACATTGCGCAACT
GGCCAAGATCTTTCAGATTCTAGGCACGCCCACCGAAGCGAATTGGCCAG
GCTACACGGCATTACCGGATTATCCTCGCTATAACATCACCCCGCAGCCT
CCGCCGGAATTGGCGCGCCTACTTCCGTCTTGCCGTCCTGACGAGCTCGA
TTTGCTTCAAAAGCTCGTGTCGCTCGATCCCAACGCGCGCTTGACGGCCC
AAGAAGCCTTGGATCACGGCTATTTTCGCGCGGAACCCCGGGCGACGCCA
CCGTCACAGTTACCCTTGCCTTTGGAAGGGAAAGGAGGCGTCAAGGAGGA
GGAGGACCATTAGGGCGTAGGGGGAAACGGGCCCTCCGTTTAATTGGTTA
AAAATCGAGAGCAAGATGTACATAAAGAAATAAATGTGCATACAAGTGCT
TTTTAA

protein sequence of NO11G00290.1

>NO11G00290.1-protein ID=NO11G00290.1-protein|Name=NO11G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MATAGLAYTKGRVVGKGTWGSVCLGTVSKTGRKVAIKEIHRSMERYEDGV
NFSVLREIKVLMELKHTNIVELLDVRVTEDGLELVLDYCETNLKRVVEDR
RLVKAIRYEDTKGFMQQLLRGLHFLHSNWILHRDLKPDNILLTAKGVLKI
ADFGLARYFGNPNETLSPGFQVITRQYRPPELLLGSRLYGPAVDIWSVGC
IMGEVRLRELLFRGDVDTDIAQLAKIFQILGTPTEANWPGYTALPDYPRY
NITPQPPPELARLLPSCRPDELDLLQKLVSLDPNARLTAQEALDHGYFRA
EPRATPPSQLPLPLEGKGGVKEEEDH*

mRNA from alignment at chr11:122844..125492-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00290.1 ID=NO11G00290.1|Name=NO11G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr11:122844..125492- (Nannochloropsis oceanica)
CAGGTCGGCGCTCCTGAGGACGCAATTTTGTGTGGCAAGGGCGTTGGCCC
AGCCCTACGAGAGAGGAGGTCGACCCTTGAGACCGACTCGAGACCCCTCC
TCCATATCTCCCCGTCTGTAATCAAGGCAGCGATGGCAACCGCCGGCCTT
GCATACACCAAAGGCCGGGTGGTGGGCAAGGGTACTTGGGGCAGTGTCTG
CTTGGGCACGGTCAGCAAGACGGGGCGGAAGGTGGCCATCAAAGAGATCC
ACCGTTCCATGGAGAGATACGAGGTGAGCTAGGTTCGAAACGAGATGGGG
AGAAAGACAGGGGAAATTTACAGCTGATCTCCACTAGGACCATGTATCTG
GCTTATCTGTGGATTGATTGGACTCGGTGAGGACGAAGAGGATCTCGGTG
AGGGTGAGCATGCCGCGCTTGATAGACAACTTCGCCCTCATCTTCATTGC
CTTCATGTCCCCGTGACGCTTCCATACCTCTTCGCCAGACATCACTACAA
TTTCCGATCGACACATCTTCCATTTTCAGGTTAACCACTTATCATTCACT
ACGTTAACACGTAAAATCACAGGACGGAGTCAACTTCTCGGTCCTGCGCG
AGATCAAGGTGTTGATGGAACTCAAGCACACCAACATCGTGGAGTTACTC
GATGTCCGCGTCACGGAGGACGGGCTCGAACTTGTCTTGGATTACTGCGA
GACAAACCTGAAGCGGGTACGTGGTTTTGCGTTCGGTTTGTCTTTGGGCG
CCCCAGATTTAAGCTTTTACAAATATAGGTGCTAGTGGCCTCTCTATTCT
CCTTCCGTCCTCCCCTTCAAGGTATCTCTCGGATTTTTACTGATGATTCT
TCTGTATTCAAACCTTTCCATTCATCAGGTTGTAGAGGACCGCCGCTTGG
TCAAGGCAATTCGGTATGAGGATACCAAAGGCTTCATGCAGCAGCTATTG
CGGGGCCTCCACTTCCTCCACTCCAACTGGATCTTGCATCGGTATGTCCT
TCGGGCGGGATTTTGGTTTTGTCCTCTGAAACGATGATGTGTGTAGCCAT
ATACCCACGTGACTGTGTGCGCTGGCACGTGTGCCTGTGTAAGGGAGCTG
GGAGGAGTTATCTTCAAAAGAGACAGTCTTGTCTTGTTGCTTGTAGATGC
AAAACTGATTATCTAACCCCGTCTGTCAGCCGCCCTCACTCACATCCCCT
TCACCTTTCCTATATCCAATCATCAGAGATCTCAAACCAGATAACATCCT
GCTCACAGCCAAGGGTGTTCTTAAGATCGCGGATTTCGGCCTCGCGCGTT
ATTTTGGGAACCCCAACGAGACCCTCTCCCCTGGCTTTCAAGTCATTACT
CGGCAGTATCGACCGCCCGAGCTTCTGTTAGGCAGTCGATTGTATGGCCC
CGCAGTGGATATATGGTCGGTGGGTTGTATCATGGTACGTTCTCTCAAGA
TAAGAGTCATATATTTTGTAATATTGTTTTGCGAAGACGCCTGTGGCCTG
ATGCCGGCAGCTACCCCGTCACGCGGGGCGGGCTTATTTTGGTGCACGCA
CTTTGTCAATAAATTTATAATCACGGTGGTAACATTTTTTAGTTGTCAGT
ATGGCGAATGTAGGTACTAATAAAATTGGTGCCTCAAATAAGAAAGTGGC
CGCGTGATTAGATCTTATTTTAGGTCATGTTGGCTATGGTTGCAGGGTGA
TGTGTGTGTCGGAAAATTTATAAATATGTGGCTATCCTTTAGACTTCGAT
CGATCCTTCATGTGCATCACTCATTTGATAAGCCCAAGCAATTCGACTGA
CATGTCACAGGCTTTAGTTTTCTCCGCTATGTTCCTTTGTTTCGGCACTC
ACGCACTTGCACACGCCCATATACACAGGGAGAGGTCCGATTGCGCGAGT
TGCTGTTCCGCGGAGATGTGGACACGGACATTGCGCAACTGGCCAAGATC
TTTCAGATTCTAGGTACGCGAAAAGACGGGAGGGAGTGGCCGGGGAGAAA
GGAAACGAGCGAGCGATGTGCAGTAAGTGTGTTGTTGATGATTACAAACA
TTAAACGAATGAACAATCCTAGTCTGACTTCTCTTTATGGAGAGAAACTT
TATGCGGTTATGAGAATGAAACAGCACGTACACACAAACGCTTCGTGAAG
CTGAGGAGGCGTAGGAGGAGGGGCACAGGGGTGCAAGGTCTGCACCTATG
GAGTCAGATCGTGTCCCCCCAGCTGTCTCTCGCTTTCTCACCACCTACAA
ATCATGAAAACAACAGGCACGCCCACCGAAGCGAATTGGCCAGGCTACAC
GGCATTACCGGATTATCCTCGCTATAACATCACCCCGCAGCCTCCGCCGG
AATTGGCGCGCCTACTTCCGTCTTGCCGTCCTGACGAGCTCGATTTGCTT
CAAAAGCTCGTGTCGCTCGATCCCAACGCGCGCTTGACGGCCCAAGAAGC
CTTGGATCACGGCTATTTTCGCGCGGAACCCCGGGCGACGCCACCGTCAC
AGTTACCCTTGCCTTTGGAAGGGAAAGGAGGCGTCAAGGAGGAGGAGGAC
CATTAGGGCGTAGGGGGAAACGGGCCCTCCGTTTAATTGGTTAAAAATCG
AGAGCAAGATGTACATAAAGAAATAAATGTGCATACAAGTGCTTTTTAA

Coding sequence (CDS) from alignment at chr11:122844..125492-

>NO11G00290.1 ID=NO11G00290.1|Name=NO11G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr11:122844..125492- (Nannochloropsis oceanica)
ATGGCAACCGCCGGCCTTGCATACACCAAAGGCCGGGTGGTGGGCAAGGG
TACTTGGGGCAGTGTCTGCTTGGGCACGGTCAGCAAGACGGGGCGGAAGG
TGGCCATCAAAGAGATCCACCGTTCCATGGAGAGATACGAGGACGGAGTC
AACTTCTCGGTCCTGCGCGAGATCAAGGTGTTGATGGAACTCAAGCACAC
CAACATCGTGGAGTTACTCGATGTCCGCGTCACGGAGGACGGGCTCGAAC
TTGTCTTGGATTACTGCGAGACAAACCTGAAGCGGGTTGTAGAGGACCGC
CGCTTGGTCAAGGCAATTCGGTATGAGGATACCAAAGGCTTCATGCAGCA
GCTATTGCGGGGCCTCCACTTCCTCCACTCCAACTGGATCTTGCATCGAG
ATCTCAAACCAGATAACATCCTGCTCACAGCCAAGGGTGTTCTTAAGATC
GCGGATTTCGGCCTCGCGCGTTATTTTGGGAACCCCAACGAGACCCTCTC
CCCTGGCTTTCAAGTCATTACTCGGCAGTATCGACCGCCCGAGCTTCTGT
TAGGCAGTCGATTGTATGGCCCCGCAGTGGATATATGGTCGGTGGGTTGT
ATCATGGGAGAGGTCCGATTGCGCGAGTTGCTGTTCCGCGGAGATGTGGA
CACGGACATTGCGCAACTGGCCAAGATCTTTCAGATTCTAGGCACGCCCA
CCGAAGCGAATTGGCCAGGCTACACGGCATTACCGGATTATCCTCGCTAT
AACATCACCCCGCAGCCTCCGCCGGAATTGGCGCGCCTACTTCCGTCTTG
CCGTCCTGACGAGCTCGATTTGCTTCAAAAGCTCGTGTCGCTCGATCCCA
ACGCGCGCTTGACGGCCCAAGAAGCCTTGGATCACGGCTATTTTCGCGCG
GAACCCCGGGCGACGCCACCGTCACAGTTACCCTTGCCTTTGGAAGGGAA
AGGAGGCGTCAAGGAGGAGGAGGACCATTAG

Synonyms

Publications