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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:1206826..1211136 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G04050.1 vs.
Match: EWM25612.1 (Major facilitator superfamily domain, general substrate transporter [Nannochloropsis gaditana]) HSP 1 Score: 170.6 bits (431), Expect = 1.200e-38 Identity = 88/114 (77.19%), Postives = 97/114 (85.09%), Query Frame = 0
Query: 387 MAGTAMGVQGLVGQVGASWAGAPVGFVAQHWGWAAIRHLWAASLLASAGLLSVPGLLVKARRVAERHRGNEGPLMKLFNYYLPPEEEREQAANEAAEARAERARERAKEREDKK 501
MAGTAMGVQGL+GQVGASWAGAPVGFVAQHWGW AIRHLWAASLLASAGLLS PGL+VKARR AERHRG EGPL+KLFNYY+PPEEER +A A AR E+ + + RE K+
Sbjct: 1 MAGTAMGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKE 114
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G04050.1 ID=NO10G04050.1|Name=NO10G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp ACATGCACAGGTCACAGGCAGGACTTGCGAGGAGGGCTTTACCGTCACGT CCATAATAAAGTCGCGCGAGTTCGCTTCTTTTATCACCCCACCACTTCGG CCGGCCTCCCCCTTACCCTGGTCCTCCCTCCCTCCTCCCCGCCCTCCGAT CTAAACGTCCACTTCTACCACCAGGAGCTATGAGTGCAATAGAGAAGCTG TCGGAAGGGCGGCATGCTCGGCGACGCATCTTTGGTCCTTTGGGTGGCCC GCCCGCGGCTTCGACACCCCTTGTCGTGACGGGCCTCTTTCAAGGCTACC TTGCCTACAATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGGCTTA CAAGGCGACGAGGGCCTTTCTAAGACTGACCTTGGTGTGGTCTCATCCTC CTTCACCGTCACGTATGGGGCATCTAAATTTGCAGGCAGCGTGATCACAG ATCACGTCTCTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCACGGGC GTGCTGTGCCTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGTGCCT CTTGTGGTCGCTGCACGGGGTGGTGCAGGGCGCGGGCTGGCCGTCGCTGG CAAAGATTTGCGTGGAGAGAGTCGCCCCCCGGGCACAGGGGAGAGTGTGG GCCTTGCTCTCAGCGGCTGGGAATGCTGGCCACGTATGCGCAGGCCCCCT CCTTCTCTCTCTGGGCGGGGGCTGGCGTCGTGTCATGCAGGGAGCGGGTA TCCTGGCGTTGCTGTCGGGGGGACTAGCCTGGATGTTGACAGGCGGCGAC GACGACGCGGCGGACGAGAAGGACGGCTGGTTCCTCAAGGCACGGAAGGA GGGGGAGGAAGGGAGGGAAATTCTATTGCCCTGGTCCACAAACCAGGATT GGCGCGCGGCCGTGGCCAAGGGTGTGGAGTGGATATTCGTGGTGAAGCGC ATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCGGACTCCCTCATCTA TTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCTCGTGCTCACCGAAA CTAAAGGCCTGACCGAGAAGGAGGCAGTGGGCGTCTTCTTCTACTGCGAG CTTGGAGCCATCCTCGGGTCTTTCGCCTCAGGCTGGGTGTCGGACCAAGT AGGCGGCCTCCGAACGTCCACCTCCTCCGTCTTTTCTCTCCTCGCCCTCC CGTTCCTCTATGCCACCCACAAGATGCCCCTTCCTGGCCTCCCCCCCCTC GCCTTCGCCTACTTCGTGCTCGGCGTTTTCGTCAACGGGCCCAAGACACT CTCCGGCATCGCCCTTCGACAGCTCGTCCCCCCCTCGATGGCCGGCACTG CCATGGGTGTCCAGGGCCTCGTCGGGCAAGTGGGGGCCTCCTGGGCCGGT GCTCCTGTCGGTTTTGTCGCGCAGCATTGGGGATGGGCTGCCATTCGACA CCTTTGGGCAGCCTCCCTCCTCGCCTCGGCCGGTCTCCTCTCCGTCCCAG GGCTGCTTGTCAAGGCCCGCCGCGTTGCCGAGCGACACCGCGGAAACGAA GGGCCATTGATGAAACTCTTCAACTATTACCTCCCTCCCGAGGAAGAGCG CGAACAAGCAGCCAACGAAGCGGCGGAAGCAAGGGCGGAAAGGGCAAGAG AGAGGGCGAAGGAGAGGGAGGACAAAAAGAAGAAGTAGGGAGGGAGGAAG GGTGTACGTAGCACTGTAGATAGAAAAGTCGAGAAAGAAATGGATAGATT CAGCGAAATTAGCGCACGCAGACACAAGATAACGAGCCGGGCGGGTTCGC GAGGATTGGAGAGAGGGATGGAGGGAGGGACAGAGAGAGGGCCGTTGGGC GAGTCTAGGACGAAAAGTTGTACAGCTAGATTTGTTGTTTGGTCTCGAGG GCCTTTCCTGGTGGTGCGTTCGGGATAAAATTTGCCTCACTCAAGAGAGA GCTAAGGATTAAAGAGGCGAAGTGGAGATGAGAGAGGAGAAAGGGGAAGG GGGAAAGGAAAGGAAATGTAACAAATGAAAACGACAGCCGTAGGTGATAC ACAGAGCAACAAGATTGACAAGCGA back to topprotein sequence of NO10G04050.1 >NO10G04050.1-protein ID=NO10G04050.1-protein|Name=NO10G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp MSAIEKLSEGRHARRRIFGPLGGPPAASTPLVVTGLFQGYLAYNMARKAL AVAAPGLQGDEGLSKTDLGVVSSSFTVTYGASKFAGSVITDHVSCRALFS LGLVLTGVLCLIFSLSSELPRLCLLWSLHGVVQGAGWPSLAKICVERVAP RAQGRVWALLSAAGNAGHVCAGPLLLSLGGGWRRVMQGAGILALLSGGLA WMLTGGDDDAADEKDGWFLKARKEGEEGREILLPWSTNQDWRAAVAKGVE WIFVVKRILRPEVAALFLADSLIYFVIKGLADWSVLVLTETKGLTEKEAV GVFFYCELGAILGSFASGWVSDQVGGLRTSTSSVFSLLALPFLYATHKMP LPGLPPLAFAYFVLGVFVNGPKTLSGIALRQLVPPSMAGTAMGVQGLVGQ VGASWAGAPVGFVAQHWGWAAIRHLWAASLLASAGLLSVPGLLVKARRVA ERHRGNEGPLMKLFNYYLPPEEEREQAANEAAEARAERARERAKEREDKK KK* back to topmRNA from alignment at chr10:1206826..1211136+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G04050.1 ID=NO10G04050.1|Name=NO10G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=4311bp|location=Sequence derived from alignment at chr10:1206826..1211136+ (Nannochloropsis oceanica) ACATGCACAGGTCACAGGCAGGACTTGCGAGGAGGGCTTTACCGTCACGT
CCATAATAAAGTCGCGCGAGTTCGCTTCTTTTATCACCCCACCACTTCGG
CCGGCCTCCCCCTTACCCTGGTCCTCCCTCCCTCCTCCCCGCCCTCCGAT
CTAAACGTCCACTTCTACCACCAGGAGCTATGAGTGCAATAGAGAAGCTG
TCGGAAGGGCGGCATGCTCGGCGACGCATCTTTGGTCCTTTGGGTGGCCC
GCCCGCGGCTTCGACACCCCTTGTCGTGACGGGTAAGGAAGGGACTAGTG
AAGATAACGGAGGTGGATAGGGGGACAGCCGTGTGTGGGAGAGAGCGCCA
AGGCGGGCACAGAAAATGTGCCCCGAGTCAACGGCCTTGATCATTGTCCA
CGCAAACCTTGCCTCTCCTGTCATGGACCCACTCATTTCCCTTGTTCCCT
CCCTTCCCCCCCTCCCTCCCCAGGCCTCTTTCAAGGCTACCTTGCCTACA
ATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGGTACACTAACGGGA
GAAGTGGATAGAAAAAGGGGAGGGGAAGCAGGAGGGATTTAGGGTTTGCT
CCGTTTTTGTCGCTCGTCTGGTTTGTGCATTTGTTGTTACCCCGACTAAT
TCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGCCTCCTTC
TTCCTTCGCAGGCTTACAAGGCGACGAGGGCCTTTCTAAGACTGACCTTG
GTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGGCATCTAAATTTGCA
GGCAGCGTGATCACAGGTAGGCAGAAAATGAGGGAGGGAGGGAAGGAGGG
AGGGGTGGAGGGAGGGGCGGAGGGAGGGAGGGAGAGACGAGGGGTCCATT
CACGTCCCACCATCTCATCCTTTTCACTGTTTGAAATCTTTCTCTTCAAC
TCAGATCACGTCTCTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCAC
GGGCGTGCTGTGCCTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGT
GCCTCTTGTGGTCGCTGCACGGGGTGGTGCAGGTGGGGGGGGGAGGAGAA
AGCGGTGAAAAAGAGCAAGAAGGAGAGCACAAGGGTGTTTCTCGGTCTCT
TCCAAACTCAGATATGACGTAATTCTCTTTTCTTTCTCTTCTCGGGGATT
CCTCATCTGACATTCCTCCTTCCCCTCCCCCCCTCACTCCCTTCCTTCCT
CCTTCTCTCTATAGGGCGCGGGCTGGCCGTCGCTGGCAAAGATTTGCGTG
GAGAGAGTCGCCCCCCGGGCACAGGGGAGAGTGTGGGCCTTGCTCTCAGC
GGCTGGGAATGCTGGTAGGGAGGGAGAAAAGGAGGGAGGGAGGACGAGAG
GGAGGGGAGCGAGGAAGGAGGGAGCGAGGGAGCGAGGACGGAAGAGTGTG
AGAGAGGGAAGGATGCTTGTTTTGAGGGGCTGCAACAGCTCCGATTTGGT
CGCGCGAATCTAAACACCCCGAACCATCCGCCCTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCTTCTTCAGGCCACGT
ATGCGCAGGCCCCCTCCTTCTCTCTCTGGGCGGGGGCTGGCGTCGTGTCA
TGCAGGGAGCGGGTATCCTGGCGTTGCTGTCGGGGGGACTAGCCTGGATG
TTGACAGGTAACGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGAGA
GGGCTAGTCTGGGTGAAATCGAAAAAGGAGGAAGGGAGGGGAGGAAAGGA
GAAAGGACGTGTCTGTTAGCTTTTCACTGGCCTCATCAATAGCATACCTG
ACATGCATCTTCCCTCCCTCCCTCCCTCCTTCCCTCTTGCCCTCCCTCCC
GCCATCTTCCTTAGGCGGCGACGACGACGCGGCGGACGAGAAGGACGGCT
GGTTCCTCAAGGCACGGAAGGAGGGGGAGGAAGGGAGGGAAATTCTATTG
CCCTGGTCCACAAACCAGGATTGGCGCGCGGCCGTGGCCAAGGGTGTGGA
GTGGATATTCGGTATGCATGGCCCATGTGACCTTCCTCCCTCCCTCTCTC
CCGCCCTCCCTCCCGCCCTCCTTTTGTGCTCTGAAGGTGTTTTCTGTCTC
TTGGACGTCGTACTTCTCTCTTCTCCTTTTATGTGCCCGCGGCGACTTCC
TTTTACGGCCTTTCTGTTTAATTGGTTGTTGACCCGCCCTCCATCCTCTC
CTTCCCCTTCCCTCCCTCCCTTCCCTCTCCTCCTTCCTGATGAAGTGGTG
AAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCGGACTCCCT
CATCTATTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCTCGTGCTCA
CCGAAACTAAAGGTACGGCTGCCCCTCCCACCCTCCCTGCCCGTCCTTGT
GTCCCTCAACCCCCCGCCCTGATCGCCTGTCTCCACAGGCCTGACCGAGA
AGGAGGCAGTGGGCGTCTTCTTCTACTGCGAGCTTGGAGCCATCCTCGGG
TCTTTCGCCTCAGGTACATTCACCCTTCCCGTCCTCCCTCCCTCCGTCCC
TCCCTCCCTCCCTCCGTCAATCTCACCTTCCCTCCCTCCGTCCCTCCCTC
CCTCCAGGCTGGGTGTCGGACCAAGTAGGCGGCCTCCGAACGTCCACCTC
CTCCGTCTTTTCTCTCCTCGCCCTCCCGTTCCTCTATGCCACCCACAAGA
TGCCCCTTCCTGGTACGCCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC
CATCCCTCCCTCCCTTCTTTCTTTCCTTGTCACCATTCGCACACAAGCCC
CGTTTGGTTGGTCTGACTCCTTCGTGTCTTTTCCTATCATTCCTCTCTCC
CTCCCTCCCTCCTTCCAGGCCTCCCCCCCCTCGCCTTCGCCTACTTCGTG
CTCGGCGTTTTCGTCAACGGGCCCAAGACACTCTCCGGCATCGCCCTTCG
ACAGGTACGACCCCACGCTCCCTCCCTCCTTCCCACCCTCCCTCTTGCCC
CATTTCCATTCCACCGTGCGTGACCATCGATTTACCGTCTTTGAGACACA
GCAACCACAACAGCATCCCACTTTCCTCTCCTATCCTCACTCCTACCCTT
GCTTCCCTTCTTCCCTCCCTCCCTCCCCTTCCTCCCTCCCCCAGCTCGTC
CCCCCCTCGATGGCCGGCACTGCCATGGGTGTCCAGGGCCTCGTCGGGCA
AGTGGGGGCCTCCTGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCAGCATG
TACGTGGCTCCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCC
CCCTAGTCTCTCGCTCGGTAAAGCCATCTGAAAGCAGAAGGTGGTACTCA
CTCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTCTGCCTGCCTA
GTGGGGATGGGCTGCCATTCGACACCTTTGGGCAGCCTCCCTCCTCGCCT
CGGCCGGTCTCCTCTCCGTCCCAGGGCTGCTTGTCAAGGTCCGTACCCGG
CGCTTGTCTCTGTCTTATTGTCTTCCATTCCTTCTTCTACCTTCTTTCCA
CGCACGGAACCGTCCTGCCTTGGCTCGTCTTCCCTCCCTCACCTCACGCC
TGCTCCGCCTCAAAAGATGAAGCGCTGTTTCACACTACCCCCCTCACCAA
CAGTCACCTCCTTTCCTCTTTCCCTCTTCCCCCCCCTCCCCTCTTTCCAG
GCCCGCCGCGTTGCCGAGCGACACCGCGGAAACGAAGGGCCATTGATGAA
ACTCTTCAACTATTACCTCCCTCCCGAGGAAGAGCGCGAACAAGCAGCCA
ACGAAGCGGCGGAAGCAAGGGCGGAAAGGGCAAGAGAGAGGGCGAAGGAG
AGGGAGGACAAAAAGAAGAAGTAGGGAGGGAGGAAGGGTGTACGTAGCAC
TGTAGATAGAAAAGTCGAGAAAGAAATGGATAGATTCAGCGAAATTAGCG
CACGCAGACACAAGATAACGAGCCGGGCGGGTTCGCGAGGATTGGAGAGA
GGGATGGAGGGAGGGACAGAGAGAGGGCCGTTGGGCGAGTCTAGGACGAA
AAGTTGTACAGCTAGATTTGTTGTTTGGTCTCGAGGGCCTTTCCTGGTGG
TGCGTTCGGGATAAAATTTGCCTCACTCAAGAGAGAGCTAAGGATTAAAG
AGGCGAAGTGGAGATGAGAGAGGAGAAAGGGGAAGGGGGAAAGGAAAGGA
AATGTAACAAATGAAAACGACAGCCGTAGGTGATACACAGAGCAACAAGA
TTGACAAGCGA back to topCoding sequence (CDS) from alignment at chr10:1206826..1211136+ >NO10G04050.1 ID=NO10G04050.1|Name=NO10G04050.1|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr10:1206826..1211136+ (Nannochloropsis oceanica) ATGAGTGCAATAGAGAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCAT CTTTGGTCCTTTGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGA CGGGCCTCTTTCAAGGCTACCTTGCCTACAATATGGCCCGAAAGGCACTC GCTGTGGCCGCACCAGGCTTACAAGGCGACGAGGGCCTTTCTAAGACTGA CCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGGCATCTAAAT TTGCAGGCAGCGTGATCACAGATCACGTCTCTTGCCGCGCCCTCTTCTCG CTGGGGCTGGTGCTCACGGGCGTGCTGTGCCTTATTTTTTCCCTGTCGTC GGAACTGCCCCGCCTGTGCCTCTTGTGGTCGCTGCACGGGGTGGTGCAGG GCGCGGGCTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCC CGGGCACAGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGG CCACGTATGCGCAGGCCCCCTCCTTCTCTCTCTGGGCGGGGGCTGGCGTC GTGTCATGCAGGGAGCGGGTATCCTGGCGTTGCTGTCGGGGGGACTAGCC TGGATGTTGACAGGCGGCGACGACGACGCGGCGGACGAGAAGGACGGCTG GTTCCTCAAGGCACGGAAGGAGGGGGAGGAAGGGAGGGAAATTCTATTGC CCTGGTCCACAAACCAGGATTGGCGCGCGGCCGTGGCCAAGGGTGTGGAG TGGATATTCGTGGTGAAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCTT TCTCGCGGACTCCCTCATCTATTTCGTCATCAAGGGTCTCGCCGACTGGT CCGTCCTCGTGCTCACCGAAACTAAAGGCCTGACCGAGAAGGAGGCAGTG GGCGTCTTCTTCTACTGCGAGCTTGGAGCCATCCTCGGGTCTTTCGCCTC AGGCTGGGTGTCGGACCAAGTAGGCGGCCTCCGAACGTCCACCTCCTCCG TCTTTTCTCTCCTCGCCCTCCCGTTCCTCTATGCCACCCACAAGATGCCC CTTCCTGGCCTCCCCCCCCTCGCCTTCGCCTACTTCGTGCTCGGCGTTTT CGTCAACGGGCCCAAGACACTCTCCGGCATCGCCCTTCGACAGCTCGTCC CCCCCTCGATGGCCGGCACTGCCATGGGTGTCCAGGGCCTCGTCGGGCAA GTGGGGGCCTCCTGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCAGCATTG GGGATGGGCTGCCATTCGACACCTTTGGGCAGCCTCCCTCCTCGCCTCGG CCGGTCTCCTCTCCGTCCCAGGGCTGCTTGTCAAGGCCCGCCGCGTTGCC GAGCGACACCGCGGAAACGAAGGGCCATTGATGAAACTCTTCAACTATTA CCTCCCTCCCGAGGAAGAGCGCGAACAAGCAGCCAACGAAGCGGCGGAAG CAAGGGCGGAAAGGGCAAGAGAGAGGGCGAAGGAGAGGGAGGACAAAAAG AAGAAGTAG back to top
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