NO10G04030.5, NO10G04030.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G04030.5
Unique NameNO10G04030.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2509
Alignment locationchr10:1201510..1205081 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1201510..1205081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G04030.5 vs.
Match: EWM25610.1 (hypothetical protein Naga_100544g3 [Nannochloropsis gaditana])

HSP 1 Score: 178.7 bits (452), Expect = 3.700e-41
Identity = 113/221 (51.13%), Postives = 137/221 (61.99%), Query Frame = 0 
Query:    1 MLLAMRRAAVITT--TITTKMTFRPLPSPLLRPRRRGLST----GNGHNVGPPPPSDPSAVAKAGVIGVSAGVFGSLVGMGGAFVMIPAMTGILKFSQHQAHGTSLAAVVATGSGGAISYGGAEAVDWEAAMYVAGVGMFAARAGAAVTGRLTGATLKRLCGIFQIVVAPTVPLRNEILAFFGSGDEKK---------CAKEGEDEWKRRLELMCIGAGSG 207
            MLLA+RR  V +     T   +    P+ L + R R L T    GNGHN    P   P+A+ KAG IGV AGVFGSLVGMGGAFV+IPA+TG+LKFSQHQAH                            A+YVAG+GM  AR GA V+GRL+ ATL+RLCG+FQ++VAPTVPLRNEILAFFGS +E K          A + +++W RRL+LM IGAGSG
Sbjct:    1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAH----------------------------ALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193
The following BLAST results are available for this feature:
BLAST of NO10G04030.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25610.13.700e-4151.13hypothetical protein Naga_100544g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G04030NO10G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G04030.5NO10G04030.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G04030.5.cds1NO10G04030.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds2NO10G04030.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds3NO10G04030.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds4NO10G04030.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds5NO10G04030.5.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds6NO10G04030.5.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds7NO10G04030.5.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04030.5.cds8NO10G04030.5.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G04030.5 ID=NO10G04030.5|Name=NO10G04030.5|organism=Nannochloropsis oceanica|type=mRNA|length=2509bp
GGTCCACTCTCAGGATTTCTTGTTGTTCTATATTACCTTCTTGTTAACTA
CCACTGACTGATAGTGGTAATGCGCGCTTCTTTCCCTCCCTCCCTCCATC
CTTCCTTCCCCCATTTTGTGCTCTAACCTTACTGGGGCGCTTCCTAAGTC
GCTGCCTTCGCATTTTTGTAGGCACGTATTTACACTCCCTCGTTGCCTCC
CTCGCTTCCTTCCTCACGTCGTCCTCCTCACTTCAGGCTTATCCCACTCT
CTCAGACTCGTTTTCCTACCGGCCCTTTCCCTCGTTGTCGGCCCATTAAA
AAGGAGTCGTTCGTCGGCAGAACCCGCCGGGGTTGTATGAGGTCTCAAGA
TGCAACTGACACCTGCTATCCAAAGCCGCAAGTGGCGCGATTTGGTCCGC
CATCATCCACATGATCGTATCTCAATAGCGGACCGGGCTGTGGCCAGTCT
TCTCATGAGATGTCAACCCACATGTCTGGAGCCCGCGGGGGTCACTCATC
GCCCGCTTTCAGATGAGGGAGCACTCAGCAACGGACAGACGATGCGTACC
AGGCCTGGCACAGTTGCAGACGGAAGTAGATAACGAAGAAAGAGCTGTGT
GCATGACTATCTGTGTTGTGCCGCTGGGGGTGTGACAGGCAAGGAAAGAA
AAGACATCTGACCTCCCCTCCCTCGCCCTCCCCGCACACAACACAGCAGC
CGGAAATGTCCCCACATTAGTGCTGTTCACCCCCCGACAACCCTTCTTTG
CAGCTTACATCCACGTAATATGCTAATGGTCCTCTCCCCTCTTCTTCTTC
CCTCCCTCTCTCCTCCCGTCCTCCCGTAGCACACCCAAACACGATCCCAG
CGGGCGCCTGGACAATGCTATTGGCCATGCGGCGGGCCGCCGTCATCACG
ACGACGATCACCACCAAGATGACATTCCGTCCTCTTCCCTCGCCTCTCCT
TAGACCAAGGAGGAGGGGCTTATCCACTGGCAACGGACATAACGTGGGGC
CGCCTCCGCCCTCCGACCCCTCGGCCGTGGCCAAGGCAGGGGTAATTGGT
GTGTCGGCGGGCGTGTTCGGGTCCCTCGTGGGCATGGGCGGGGCATTCGT
GATGATCCCAGCCATGACGGGCATCCTGAAGTTCTCCCAGCACCAGGCAC
ACGGCACGTCTTTGGCGGCAGTGGTAGCGACGGGGAGTGGCGGGGCCATT
TCGTATGGGGGGGCAGAGGCGGTGGATTGGGAGGCAGCAATGTACGTGGC
GGGCGTGGGGATGTTCGCTGCTCGTGCAGGAGCCGCCGTGACTGGACGAC
TGACAGGCGCAACACTGAAGAGACTCTGTGGAATCTTCCAAATTGTTGTG
GCGCCGACTGTCCCCTTGAGGAATGAGATTTTGGCTTTTTTTGGTAGCGG
CGACGAGAAAAAGTGCGCGAAGGAGGGCGAAGATGAGTGGAAGCGGCGGC
TGGAGCTAATGTGCATTGGGGCGGGGAGCGGCTTTTTGGCCGGACTATTC
GGCGTGGGCGGAGGGGCCGTGACCATCCCCGCCTTAACCCTCTGTCTGGA
TATGTCGCATTACCAGGCCCTCGGGACGTCGCTGGCTGCCATGGTCCCAA
CGGCCATCGTCGGCACTCTCTCGCACCACAGACAAGGTAGGAAGGGAGGA
AGGGAGGGAGGGTGTGAGGGAAGGAGGGAAGGAGAGGGTTTCGCAAAGAG
CGGAAGAGAAGGGAGAGAGGACGTCGTTACAATGCCATTCTTCTTCCACC
ATTCCTCCCTCCGTCCATCCATTCCTTTTTCATCACTCCTTCCATCTCTC
CCTCCATCCCTCTTTCAATCCCTCCTTCCATTCCTCCCTCCAGGTCACGT
AGTCTGGACGCTGGTGGCCCCCTTGGCATTGGGCTCACTCTGCGGGAGTT
ATTTCGGTGGGAAAGACATCGCCTTGCAGGTTGGGAGGGAAGGAGGGAGG
GAAGGAGGGAGAAAGCAGAAAGGTTTGAAAAGGGAGCCCCACATCGTGCG
GAATTTGAGCAACTTGGTGAATAAAAGCAAATCTAGCGTTACGGTTGGTG
TCTACCATGGCCATACTGACTCCCTCTCTCTTCCACTTGCCTCCCTCCCA
GATTCCTGAGGCCTATTTGAAGTGGGGCTTCGGTGTTATGATGATTGTGT
TGGGTGCCAAGAGCATCCATGCCTCACTGCCAATTAAAAGCGCCATGGCA
GCCGCGAAGAAAGGGTGAAGGATGGAGGGGAGGGAGGGGGAGAGAGGCTG
GAAATCTAGGTAAGAGGCTGGAAATCAAGGTAATTGCATGTACAAGCACT
GTGGTCGCTAGGCGTCTTTGTCATCCCAGTAGTGCGGCTGATAAATACCG
CTACCGAAAAAAACGCTCGCATAAATTTTGATTGGCGAGATGTCCTCGAA
GTGGGTGGTTGTCAAAAGAAAGAAATAATGGGGAAAAATGCGTAGGAGTG
GGGGGTGGGGAGGTTGTTATTTTTGCTTGCTGTCTTGTGGCCTTAAAAAG
AACGAGCAC
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protein sequence of NO10G04030.5

>NO10G04030.5-protein ID=NO10G04030.5-protein|Name=NO10G04030.5|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MLLAMRRAAVITTTITTKMTFRPLPSPLLRPRRRGLSTGNGHNVGPPPPS
DPSAVAKAGVIGVSAGVFGSLVGMGGAFVMIPAMTGILKFSQHQAHGTSL
AAVVATGSGGAISYGGAEAVDWEAAMYVAGVGMFAARAGAAVTGRLTGAT
LKRLCGIFQIVVAPTVPLRNEILAFFGSGDEKKCAKEGEDEWKRRLELMC
IGAGSGFLAGLFGVGGGAVTIPALTLCLDMSHYQALGTSLAAMVPTAIVG
TLSHHRQGRKGGREGGCEGRREGEGFAKSGREGREDVVTMPFFFHHSSLR
PSIPFSSLLPSLPPSLFQSLLPFLPPGHVVWTLVAPLALGSLCGSYFGGK
DIALQVGREGGREGGRKQKGLKREPHIVRNLSNLVNKSKSSVTVGVYHGH
TDSLSLPLASLPDS*
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mRNA from alignment at chr10:1201510..1205081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G04030.5 ID=NO10G04030.5|Name=NO10G04030.5|organism=Nannochloropsis oceanica|type=mRNA|length=3572bp|location=Sequence derived from alignment at chr10:1201510..1205081- (Nannochloropsis oceanica)
GGTCCACTCTCAGGATTTCTTGTTGTTCTATATTACCTTCTTGTTAACTA
CCACTGACTGATAGTGGTAATGCGCGCTTCTTTCCCTCCCTCCCTCCATC
CTTCCTTCCCCCATTTTGTGCTCTAACCTTACTGGGGCGCTTCCTAAGTC
GCTGCCTTCGCATTTTTGTAGGCACGTATTTACACTCCCTCGTTGCCTCC
CTCGCTTCCTTCCTCACGTCGTCCTCCTCACTTCAGGCTTATCCCACTCT
CTCAGACTCGTTTTCCTACCGGCCCTTTCCCTCGTTGTCGGCCCATTAAA
AAGGAGTCGTTCGTCGGCAGAACCCGCCGGGGTTGTATGAGGTCTCAAGA
TGCAACTGACACCTGCTATCCAAAGCCGCAAGTGGCGCGATTTGGTCCGC
CATCATCCACATGATCGTATCTCAATAGCGGACCGGGCTGTGGCCAGTCT
TCTCATGAGATGTCAACCCACATGTCTGGAGCCCGCGGGGGTCACTCATC
GCCCGCTTTCAGATGAGGGAGCACTCAGCAACGGACAGACGATGCGTACC
AGGCCTGGCACAGTTGCAGACGGAAGTAGATAACGAAGAAAGAGCTGTGT
GCATGACTATCTGTGTTGTGCCGCTGGGGGTGTGACAGGCAAGGAAAGAA
AAGACATCTGACCTCCCCTCCCTCGCCCTCCCCGCACACAACACAGCAGC
CGGAAATGTCCCCACATTAGTGCTGTTCACCCCCCGACAACCCTTCTTTG
CAGCTTACATCCACGTAATATGCTAATGGTCCTCTCCCCTCTTCTTCTTC
CCTCCCTCTCTCCTCCCGTCCTCCCGTAGCACACCCAAACACGATCCCAG
CGGGCGCCTGGACAATGCTATTGGCCATGCGGCGGGCCGCCGTCATCACG
ACGACGATCACCACCAAGATGACATTCCGTCCTCTTCCCTCGCCTCTCCT
TAGACCAAGGAGGAGGGGCTTATCCACTGGCAACGGACATAACGTGGGGC
CGCCTCCGCCCTCCGACCCCTCGGCCGTGGCCAAGGCAGGGGTAATTGGT
ACGTGTTTGATGGCCTTTTCGATCGGTGCAACAGAGATTTTCACCTTCCA
ACGGGCCGCCTTGGACTTTGTACTCGATACATACACTTTTCTATTCAAAA
ATGCTGGTCCTCCCTCCTTCCCTCCCTCCCCCCTGCCCTCCTTCCCTCCC
TCCTCCTCACCCAGGTGTGTCGGCGGGCGTGTTCGGGTCCCTCGTGGGCA
TGGGCGGGGCATTCGTGATGATCCCAGCCATGACGGGCATCCTGAAGTTC
TCCCAGCACCAGGCACACGGTAGGAAGGGAGGGAGGGAGGAAGAGAGGGA
GAGGAGGGCTGGAAGATTTGATGGGAGATTCATGGGCTTGTAGATAAATC
TACATCAATGCGTACTTAAATGCACGCATGAGCCATTCTATCGCACTGAT
TTTGCCTATACACTTCTATCTATGATTCGTCTTATGGCAAGGCACGTCTT
TGGCGGCAGTGGTAGCGACGGGGAGTGGCGGGGCCATTTCGTATGGGGGG
GCAGAGGCGGTGGATTGGGAGGTAGGGGGGGAAGGAGGGAGGAAGGATGC
AAGGATGCAAGGGTGCGAGGGAGGGCTGTATGGTGAGATAACAACAAGCG
GAGGGATGAAAGAGTCATAGTTGAAGAAAGACGGGCATGCTATGCGTATG
AGCTTCCTTCCTTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCAGCAATGTACGTGGCGG
GCGTGGGGATGTTCGCTGCTCGTGCAGGAGCCGCCGTGACTGGACGACTG
ACAGGCGCAACACTGAAGAGACTCTGTGTGAGTGGAAATCGTAGGAAGGG
AGCGAGGGAGGGAGGGAAGGAAGGAAGGAGAGGGCTCACGCACCCCACCG
AATTTTGTCATCATGTACAGGGAATCTTCCAAATTGTTGTGGCGCCGACT
GTCCCCTTGAGGTGAGGGACCTTCCCTCTCTTCCTCCCTCCCTCCTTTCC
TCCTTTCCTCCCTCCGTTCCCCCAGCCTCTTTTTTTCCCCTCCCTCTTTC
GTAGGAATGAGATTTTGGCTTTTTTTGGTAGCGGCGACGAGAAAAAGTGC
GCGAAGGAGGGCGAAGATGAGTGGAAGCGGCGGCTGGAGCTAATGTGCAT
TGGGGCGGGGAGCGGGTATGGGAGGGAAGGGGTGAAGGGAGGAAGCGGAG
GAGGAAGGGAGGGAGGAAGGGAGGGAAGAAGGGAAGAGCTGAAATCACGG
ACAATAGCGTTCCTGCGTCGCGGTTCTACTTCTATTTGATTTCCTGCTTT
CATCCACCCCTCCTTTTCTCCCTCCCTCCCTCCCTAGCTTTTTGGCCGGA
CTATTCGGCGTGGGCGGAGGGGCCGTGACCATCCCCGCCTTAACCCTCTG
TCTGGATATGTCGCATTACCAGGCAAGGAAGGCGGGAGGGAGGGAGGGGA
GGGGGAAGAAGGGAGAAATGTTTTGACGTGTCCGTCCTCGTGGTGCTCTT
CAGCTTCACGCCGGGAGTCGTCGACTTATCCCTCCTTCCCTCCCTCCCTC
CCTCCCTTCCTCCCTCCCTCCCTCCCCAGGCCCTCGGGACGTCGCTGGCT
GCCATGGTCCCAACGGCCATCGTCGGCACTCTCTCGCACCACAGACAAGG
TAGGAAGGGAGGAAGGGAGGGAGGGTGTGAGGGAAGGAGGGAAGGAGAGG
GTTTCGCAAAGAGCGGAAGAGAAGGGAGAGAGGACGTCGTTACAATGCCA
TTCTTCTTCCACCATTCCTCCCTCCGTCCATCCATTCCTTTTTCATCACT
CCTTCCATCTCTCCCTCCATCCCTCTTTCAATCCCTCCTTCCATTCCTCC
CTCCAGGTCACGTAGTCTGGACGCTGGTGGCCCCCTTGGCATTGGGCTCA
CTCTGCGGGAGTTATTTCGGTGGGAAAGACATCGCCTTGCAGGTTGGGAG
GGAAGGAGGGAGGGAAGGAGGGAGAAAGCAGAAAGGTTTGAAAAGGGAGC
CCCACATCGTGCGGAATTTGAGCAACTTGGTGAATAAAAGCAAATCTAGC
GTTACGGTTGGTGTCTACCATGGCCATACTGACTCCCTCTCTCTTCCACT
TGCCTCCCTCCCAGATTCCTGAGGCCTATTTGAAGTGGGGCTTCGGTGTT
ATGATGATTGTGTTGGGTGCCAAGAGCATCCATGCCTCACTGCCAATTAA
AAGCGCCATGGCAGCCGCGAAGAAAGGGTGAAGGATGGAGGGGAGGGAGG
GGGAGAGAGGCTGGAAATCTAGGTAAGAGGCTGGAAATCAAGGTAATTGC
ATGTACAAGCACTGTGGTCGCTAGGCGTCTTTGTCATCCCAGTAGTGCGG
CTGATAAATACCGCTACCGAAAAAAACGCTCGCATAAATTTTGATTGGCG
AGATGTCCTCGAAGTGGGTGGTTGTCAAAAGAAAGAAATAATGGGGAAAA
ATGCGTAGGAGTGGGGGGTGGGGAGGTTGTTATTTTTGCTTGCTGTCTTG
TGGCCTTAAAAAGAACGAGCAC
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Coding sequence (CDS) from alignment at chr10:1201510..1205081-

>NO10G04030.5 ID=NO10G04030.5|Name=NO10G04030.5|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr10:1201510..1205081- (Nannochloropsis oceanica)
ATGCTATTGGCCATGCGGCGGGCCGCCGTCATCACGACGACGATCACCAC
CAAGATGACATTCCGTCCTCTTCCCTCGCCTCTCCTTAGACCAAGGAGGA
GGGGCTTATCCACTGGCAACGGACATAACGTGGGGCCGCCTCCGCCCTCC
GACCCCTCGGCCGTGGCCAAGGCAGGGGTAATTGGTGTGTCGGCGGGCGT
GTTCGGGTCCCTCGTGGGCATGGGCGGGGCATTCGTGATGATCCCAGCCA
TGACGGGCATCCTGAAGTTCTCCCAGCACCAGGCACACGGCACGTCTTTG
GCGGCAGTGGTAGCGACGGGGAGTGGCGGGGCCATTTCGTATGGGGGGGC
AGAGGCGGTGGATTGGGAGGCAGCAATGTACGTGGCGGGCGTGGGGATGT
TCGCTGCTCGTGCAGGAGCCGCCGTGACTGGACGACTGACAGGCGCAACA
CTGAAGAGACTCTGTGGAATCTTCCAAATTGTTGTGGCGCCGACTGTCCC
CTTGAGGAATGAGATTTTGGCTTTTTTTGGTAGCGGCGACGAGAAAAAGT
GCGCGAAGGAGGGCGAAGATGAGTGGAAGCGGCGGCTGGAGCTAATGTGC
ATTGGGGCGGGGAGCGGCTTTTTGGCCGGACTATTCGGCGTGGGCGGAGG
GGCCGTGACCATCCCCGCCTTAACCCTCTGTCTGGATATGTCGCATTACC
AGGCCCTCGGGACGTCGCTGGCTGCCATGGTCCCAACGGCCATCGTCGGC
ACTCTCTCGCACCACAGACAAGGTAGGAAGGGAGGAAGGGAGGGAGGGTG
TGAGGGAAGGAGGGAAGGAGAGGGTTTCGCAAAGAGCGGAAGAGAAGGGA
GAGAGGACGTCGTTACAATGCCATTCTTCTTCCACCATTCCTCCCTCCGT
CCATCCATTCCTTTTTCATCACTCCTTCCATCTCTCCCTCCATCCCTCTT
TCAATCCCTCCTTCCATTCCTCCCTCCAGGTCACGTAGTCTGGACGCTGG
TGGCCCCCTTGGCATTGGGCTCACTCTGCGGGAGTTATTTCGGTGGGAAA
GACATCGCCTTGCAGGTTGGGAGGGAAGGAGGGAGGGAAGGAGGGAGAAA
GCAGAAAGGTTTGAAAAGGGAGCCCCACATCGTGCGGAATTTGAGCAACT
TGGTGAATAAAAGCAAATCTAGCGTTACGGTTGGTGTCTACCATGGCCAT
ACTGACTCCCTCTCTCTTCCACTTGCCTCCCTCCCAGATTCCTGA
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Synonyms
Publications