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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:1146753..1149220 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03910.1 vs.
Match: EWM25596.1 (prenyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 357.1 bits (915), Expect = 8.800e-95 Identity = 214/378 (56.61%), Postives = 258/378 (68.25%), Query Frame = 0
Query: 110 HAHHPYIELLRPHNVLPSMCLVLVGAWITARDLRRVIDPVVVMMAITSALVAVGSCVLNDYFDLKTDRINNLERSLVQGRVRPLHALLLALACLSMALFVGNSVVPTGTKINGLFF---LCRQTS----AVPMLDLASAGGKYPGAENVQLLLRLLRRIVYMAVLAVSLYTPLFKPIPFLKNGVVSLVTAASVVLGGLAALAVSTCSSIPSSLPPSLLASASVVFCHMYHREILMDIDDTERDKAGQILTLPRLFGKSLALSLGGALVALSTAVSGWIVWTQHGLRLPSL-PIFQAGG---FRGGTGGIAARLAGEMGMGVIRASAAWFAPVAVCVAGLSICVYDWRVVWMRGFRHEDVDKGIAWCPLAMVVMLLLMG 477
H HPYIE+LRP NVLPS LVL+GAWIT RDLR V+ P+V MAITSALVAVGSCVLNDYFD DRIN+ ER+LVQG++RP++ALLLAL+CL+ AL +GN + I+ F + Q S + P + A+A P + + RLLRRIV AV AV LYTP+FKP PFLKNGVV+LV AASV LGGLAA +T SS+PSSLPPSLLA+ V CH++HREILMDIDD D AG ILTLPRL GK L+LSLGG LVA+ST VS +V QH L SL +F G FR G AA G G A W A ++CVAG+ +C+YDWRVVW GFR DV++G+ W PLAM+ +LL++G
Sbjct: 111 HPWHPYIEVLRPQNVLPSAFLVLIGAWITTRDLRLVLSPLVAQMAITSALVAVGSCVLNDYFDRGVDRINHPERTLVQGQIRPIYALLLALSCLTTALLLGN--IDLSCTIHRAFASVPVAGQPSTSYLSPPPMRWATARTLTPHSYT-ESTRRLLRRIVQTAVAAVVLYTPVFKPFPFLKNGVVALVIAASVALGGLAAATTATLSSLPSSLPPSLLAAVITVSCHIFHREILMDIDDIAGDHAGGILTLPRLLGKPLSLSLGGVLVAVSTWVSARLVVIQHALTFSSLFSLFNGPGLLAFRAAWG--AAGPHGTAG----GALGGWVALGSICVAGVVVCLYDWRVVWRGGFRGRDVERGVKWAPLAMLTVLLVLG 479
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03910.1 ID=NO10G03910.1|Name=NO10G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp
CTTGACTTTCTTTCCACATGCAATTCCTTGCCACTTATTATGTGGGTCGC
CGTTAATGGAAATAACATCTTTGTGAGCCTATTCTTGCGTGGATGTCTGT
TCTGAATGCACGCATGCGTGGCAGAGTTTCTGTGAAGCGACTAGGGCCCA
TATTCTAAATAACGAAAGTTGACACTCCACTGTTCTGATTGTCCTTGTGC
TGAGGACTCCTGGATACATGACTAAATCCTATCCCTTGTGCAAGGAGGGT
AAATTAATATACGAGGTAACATGAAGATGCCTCCGATCATCTGTCAGGGC
GTGCTTGGGCGCGGCATCTTTGCTCCCCACAACGAGGGACCTCTAGTTTG
ACACGCATGCCTTTCTCTCACATCTCCTCCACGTGCACAGTGTACGAGGC
AGCTTGTTGTCTGAAGGGGCAATGTGGATATTGGCTTATCGCCATAGGAT
GGTATCTTCTTCCTGTTGCTTGCTTCCTCTGCTTCTCCTCCCTCGCCAGC
ACGTCGAAGGATTCCATCTTTCCCGCTTTCTTGCGCGTTGCCCACATCGG
CAAGTGTCAATGACCACCATTCCAAGGCCCGTCGTCGATCGGCCCATCCT
TCTCCATGGATCAATCTTTCCAAAGTCCACCAATATTCTCCCTTCCCCTT
CAAAGACTCCGAGCCATGCCCACTCTCATTCCTTTTCTTCGTCTTCGTCC
ACAAGCATCAATGTAAAACCTTCCAGGGCTGCTTCTACTGGTCAAACGCA
CGCTCATCACCCTTACATTGAGCTTCTGCGACCACATAATGTGCTGCCAT
CGATGTGTCTTGTCTTGGTGGGCGCTTGGATAACCGCGCGTGATCTCCGT
CGTGTCATCGACCCGGTGGTGGTCATGATGGCCATTACCTCCGCTCTTGT
CGCCGTAGGCTCTTGCGTGCTCAACGACTATTTCGACTTGAAGACCGACC
GCATCAATAATCTGGAACGATCCCTTGTCCAAGGCAGAGTCCGACCTCTC
CATGCCCTTCTTCTGGCACTCGCATGCCTGAGCATGGCCCTTTTCGTTGG
CAACAGCGTTGTTCCGACCGGTACCAAGATAAATGGTTTATTCTTTCTCT
GTCGTCAAACTAGCGCAGTCCCCATGCTGGACCTTGCATCAGCAGGAGGA
AAATATCCAGGAGCAGAAAATGTACAGCTTCTCTTGCGTCTGCTGCGGCG
TATCGTCTACATGGCTGTCCTTGCTGTATCACTTTACACGCCCCTTTTTA
AGCCAATTCCCTTTCTTAAGAATGGCGTTGTCTCCTTGGTGACGGCCGCC
TCCGTGGTGCTTGGGGGCCTTGCGGCTCTCGCCGTCTCAACCTGTTCATC
TATTCCATCTTCCCTCCCTCCTTCCCTTCTCGCCTCCGCTTCGGTCGTAT
TCTGTCATATGTATCATCGGGAAATTTTGATGGATATTGACGATACGGAG
AGGGACAAGGCAGGCCAGATCCTTACCCTCCCCCGGCTCTTCGGGAAGTC
TCTCGCCCTCTCGCTGGGTGGGGCGCTCGTTGCTCTAAGCACAGCGGTAA
GCGGTTGGATTGTGTGGACCCAACACGGCCTGAGGTTACCGTCGTTACCA
ATCTTTCAAGCAGGAGGGTTCAGGGGAGGAACAGGCGGAATTGCAGCAAG
ACTGGCAGGAGAGATGGGAATGGGGGTGATAAGAGCATCAGCAGCGTGGT
TTGCGCCCGTAGCAGTGTGTGTTGCAGGCTTGAGTATTTGTGTGTACGAT
TGGCGGGTGGTGTGGATGAGGGGATTCCGTCATGAAGATGTCGATAAGGG
CATTGCATGGTGCCCTCTGGCGATGGTCGTGATGCTGCTGTTGATGGGCA
CGGGGTGTAGTACATGATCTGATAGCTGAGCATGGCTGGAGGGAAAGACA
TTTGAGGATTTAAGTCAAAGGATACGCATAATAGACGCAGGCAGTCACGA
ATTTAAAACCAGAGGTTGTGCATATGGGAGGGCAATGACAGAAGGGAAAA
GGGGCAAGTCTTAAAAATAAGCCCTCGCCTCGCTCTGACTTGTTATACGG
GCAAAGTATCATGGGAAGAAGGTAGGGGTAGAGGAAGTCAAGACACTACT
ATTCGTCGTTATTTGTTTTCGATTCGTATATCCTGCCGATACGAGTATGT
TTTAAGGGCCTAAATGTCCACATTGTGCAGATGGAGAGTTATCGAAGACC
GTGAGAACGATGAGATGCTCTTATAAATAAGCAGGCTTGTTTCTACTGCC
AACTCAAGATACATGATGACGGAAAGAAAGGAAAATTTACTGCCTGGTGA
ATATAAGCTAAGATAAGTAATCCCATCCATCATGA back to topprotein sequence of NO10G03910.1 >NO10G03910.1-protein ID=NO10G03910.1-protein|Name=NO10G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MWILAYRHRMVSSSCCLLPLLLLPRQHVEGFHLSRFLARCPHRQVSMTTI
PRPVVDRPILLHGSIFPKSTNILPSPSKTPSHAHSHSFSSSSSTSINVKP
SRAASTGQTHAHHPYIELLRPHNVLPSMCLVLVGAWITARDLRRVIDPVV
VMMAITSALVAVGSCVLNDYFDLKTDRINNLERSLVQGRVRPLHALLLAL
ACLSMALFVGNSVVPTGTKINGLFFLCRQTSAVPMLDLASAGGKYPGAEN
VQLLLRLLRRIVYMAVLAVSLYTPLFKPIPFLKNGVVSLVTAASVVLGGL
AALAVSTCSSIPSSLPPSLLASASVVFCHMYHREILMDIDDTERDKAGQI
LTLPRLFGKSLALSLGGALVALSTAVSGWIVWTQHGLRLPSLPIFQAGGF
RGGTGGIAARLAGEMGMGVIRASAAWFAPVAVCVAGLSICVYDWRVVWMR
GFRHEDVDKGIAWCPLAMVVMLLLMGTGCST* back to topmRNA from alignment at chr10:1146753..1149220- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03910.1 ID=NO10G03910.1|Name=NO10G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr10:1146753..1149220- (Nannochloropsis oceanica)
CTTGACTTTCTTTCCACATGCAATTCCTTGCCACTTATTATGTGGGTCGC
CGTTAATGGAAATAACATCTTTGTGAGCCTATTCTTGCGTGGATGTCTGT
TCTGAATGCACGCATGCGTGGCAGAGTTTCTGTGAAGCGACTAGGGCCCA
TATTCTAAATAACGAAAGTTGACACTCCACTGTTCTGATTGTCCTTGTGC
TGAGGACTCCTGGATACATGACTAAATCCTATCCCTTGTGCAAGGAGGGT
AAATTAATATACGAGGTAACATGAAGATGCCTCCGATCATCTGTCAGGGC
GTGCTTGGGCGCGGCATCTTTGCTCCCCACAACGAGGGACCTCTAGTTTG
ACACGCATGCCTTTCTCTCACATCTCCTCCACGTGCACAGTGTACGAGGC
AGCTTGTTGTCTGAAGGGGCAATGTGGATATTGGCTTATCGCCATAGGAT
GGTATCTTCTTCCTGTTGCTTGCTTCCTCTGCTTCTCCTCCCTCGCCAGC
ACGTCGAAGGATTCCATCTTTCCCGCTTTCTTGCGCGTTGCCCACATCGG
CAAGTGTCAATGACCACCATTCCAAGGCCCGTCGTCGATCGGCCCATCCT
TCTCCATGGATCAATCTTTCCAAAGTCCACCAATATTCTCCCTTCCCCTT
CAAAGACTCCGAGCCATGCCCACTCTCATTCCTTTTCTTCGTCTTCGTCC
ACAAGCATCAATGTAAAACCTTCCAGGGCTGCTTCTACTGGTCAAACGCA
CGCTCATCACCCTTACATTGAGCTTCTGCGACCACATAATGTGCTGCCAT
CGATGTGTCTTGTCTTGGTGGGCGCTTGGATAACCGCGCGTGATCTCCGT
CGTGTCATCGACCCGGTGGTGGTCATGATGGGTAAGTGCCGGGCGTAGAT
CCACGGGAGTGCCGTCATTCATTGATTTTGTCTCACGCGGGCATGTAGAC
AGCAGACAGTTCGTATCCTGTCCGTCTCTCCCTCACTCCTATTACTACCC
ATACATATCCCCAGCCATTACCTCCGCTCTTGTCGCCGTAGGCTCTTGCG
TGCTCAACGACTATTTCGACTTGAAGACCGACCGCATCAATAATCTGGAA
CGATCCCTTGTCCAAGGCAGAGTCCGACCTCTCCATGCCCTTCTTCTGGC
ACTCGCATGCCTGAGCATGGCCCTTTTCGTTGGCAACAGCGTTGTTCCGA
CCGGTACCAAGATAAATGGTTTATTCTTTCTCTGTCGTCAAACTAGCGCA
GTCCCCATGCTGGACCTTGCATCAGCAGGAGGAAAATATCCAGGAGCAGA
AAATGTACAGCTTCTCTTGCGTCTGCTGCGGCGTATCGTCTACATGGCTG
TCCTTGCTGTATCACTTTACACGCCCCTTTTTAAGCCAATTCCCTTTCTT
AAGAATGGCGTTGTCTCCTTGGTGACGGCCGCCTCCGTGGTGCTTGGGGG
CCTTGCGGCTCTCGCCGTCTCAACCTGTTCATCTATTCCATCTTCCCTCC
CTCCTTCCCTTCTCGCCTCCGCTTCGGTCGTATTCTGTCATATGTATCAT
CGGGAAATTTTGATGGATATTGACGATACGGAGAGGGACAAGGCAGGCCA
GATCCTTACCCTCCCCCGGCTCTTCGGGAAGTCTCTCGCCCTCTCGCTGG
GTGGGGCGCTCGTTGCTCTAAGCACAGCGGTAAGCGGTTGGATTGTGTGG
ACCCAACACGGCCTGAGGTTACCGTCGTTACCAATCTTTCAAGCAGGAGG
GTTCAGGGGAGGAACAGGCGGAATTGCAGCAAGACTGGCAGGAGAGATGG
GAATGGGGGTGATAAGAGCATCAGCAGCGTGGTTTGCGCCCGTAGCAGTG
TGTGTTGCAGGCTTGAGTATTTGTGTGTACGATTGGCGGGTGGTGTGGAT
GAGGGGATTCCGTCATGAAGATGTCGATAAGGGCATTGCATGGTGCCCTC
TGGCGATGGTCGTGATGCTGCTGTTGATGGGCACGGGGTGTAGTACATGA
TCTGATAGCTGAGCATGGCTGGAGGGAAAGACATTTGAGGATTTAAGTCA
AAGGATACGCATAATAGACGCAGGCAGTCACGAATTTAAAACCAGAGGTT
GTGCATATGGGAGGGCAATGACAGAAGGGAAAAGGGGCAAGTCTTAAAAA
TAAGCCCTCGCCTCGCTCTGACTTGTTATACGGGCAAAGTATCATGGGAA
GAAGGTAGGGGTAGAGGAAGTCAAGACACTACTATTCGTCGTTATTTGTT
TTCGATTCGTATATCCTGCCGATACGAGTATGTTTTAAGGGCCTAAATGT
CCACATTGTGCAGATGGAGAGTTATCGAAGACCGTGAGAACGATGAGATG
CTCTTATAAATAAGCAGGCTTGTTTCTACTGCCAACTCAAGATACATGAT
GACGGAAAGAAAGGAAAATTTACTGCCTGGTGAATATAAGCTAAGATAAG
TAATCCCATCCATCATGA back to topCoding sequence (CDS) from alignment at chr10:1146753..1149220- >NO10G03910.1 ID=NO10G03910.1|Name=NO10G03910.1|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr10:1146753..1149220- (Nannochloropsis oceanica)
ATGTGGATATTGGCTTATCGCCATAGGATGGTATCTTCTTCCTGTTGCTT
GCTTCCTCTGCTTCTCCTCCCTCGCCAGCACGTCGAAGGATTCCATCTTT
CCCGCTTTCTTGCGCGTTGCCCACATCGGCAAGTGTCAATGACCACCATT
CCAAGGCCCGTCGTCGATCGGCCCATCCTTCTCCATGGATCAATCTTTCC
AAAGTCCACCAATATTCTCCCTTCCCCTTCAAAGACTCCGAGCCATGCCC
ACTCTCATTCCTTTTCTTCGTCTTCGTCCACAAGCATCAATGTAAAACCT
TCCAGGGCTGCTTCTACTGGTCAAACGCACGCTCATCACCCTTACATTGA
GCTTCTGCGACCACATAATGTGCTGCCATCGATGTGTCTTGTCTTGGTGG
GCGCTTGGATAACCGCGCGTGATCTCCGTCGTGTCATCGACCCGGTGGTG
GTCATGATGGCCATTACCTCCGCTCTTGTCGCCGTAGGCTCTTGCGTGCT
CAACGACTATTTCGACTTGAAGACCGACCGCATCAATAATCTGGAACGAT
CCCTTGTCCAAGGCAGAGTCCGACCTCTCCATGCCCTTCTTCTGGCACTC
GCATGCCTGAGCATGGCCCTTTTCGTTGGCAACAGCGTTGTTCCGACCGG
TACCAAGATAAATGGTTTATTCTTTCTCTGTCGTCAAACTAGCGCAGTCC
CCATGCTGGACCTTGCATCAGCAGGAGGAAAATATCCAGGAGCAGAAAAT
GTACAGCTTCTCTTGCGTCTGCTGCGGCGTATCGTCTACATGGCTGTCCT
TGCTGTATCACTTTACACGCCCCTTTTTAAGCCAATTCCCTTTCTTAAGA
ATGGCGTTGTCTCCTTGGTGACGGCCGCCTCCGTGGTGCTTGGGGGCCTT
GCGGCTCTCGCCGTCTCAACCTGTTCATCTATTCCATCTTCCCTCCCTCC
TTCCCTTCTCGCCTCCGCTTCGGTCGTATTCTGTCATATGTATCATCGGG
AAATTTTGATGGATATTGACGATACGGAGAGGGACAAGGCAGGCCAGATC
CTTACCCTCCCCCGGCTCTTCGGGAAGTCTCTCGCCCTCTCGCTGGGTGG
GGCGCTCGTTGCTCTAAGCACAGCGGTAAGCGGTTGGATTGTGTGGACCC
AACACGGCCTGAGGTTACCGTCGTTACCAATCTTTCAAGCAGGAGGGTTC
AGGGGAGGAACAGGCGGAATTGCAGCAAGACTGGCAGGAGAGATGGGAAT
GGGGGTGATAAGAGCATCAGCAGCGTGGTTTGCGCCCGTAGCAGTGTGTG
TTGCAGGCTTGAGTATTTGTGTGTACGATTGGCGGGTGGTGTGGATGAGG
GGATTCCGTCATGAAGATGTCGATAAGGGCATTGCATGGTGCCCTCTGGC
GATGGTCGTGATGCTGCTGTTGATGGGCACGGGGTGTAGTACATGA back to top
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