NO10G03880.3, NO10G03880.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03880.3
Unique NameNO10G03880.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1374
Alignment locationchr10:1132041..1134312 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1132041..1134312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03880.3 vs.
Match: EWM25584.1 (hypothetical protein Naga_100377g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 5.800e-53
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0 
Query:    1 MAKGKSGSNDKKK-PQEMEIRHWDEDDEPEFLLITDSKTQATINCTAETLVTRGGKEYMIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLPTVEATLKEMGATLVRSAGTLTIEGDVEIYDEEGE 125
            MAKGK G NDKKK PQEM+IRHWDEDDE EFLLI DSK QATINCTAETLVTRGGKEYMIGLPIDTPVVVVD+KMNALE+GFD RLP MLPTVEATL +MGATL+RSAGTLTIEGDVEIYDEEGE
Sbjct:   57 MAKGKGGGNDKKKAPQEMQIRHWDEDDETEFLLIADSKNQATINCTAETLVTRGGKEYMIGLPIDTPVVVVDEKMNALELGFDARLPEMLPTVEATLTDMGATLLRSAGTLTIEGDVEIYDEEGE 181
The following BLAST results are available for this feature:
BLAST of NO10G03880.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25584.15.800e-5388.80hypothetical protein Naga_100377g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03880NO10G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03880.3NO10G03880.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03880.3.cds1NO10G03880.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03880.3.cds2NO10G03880.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03880.3.cds3NO10G03880.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03880.3.cds4NO10G03880.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03880.3.cds5NO10G03880.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03880.3.cds6NO10G03880.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03880.3.cds7NO10G03880.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03880.3 ID=NO10G03880.3|Name=NO10G03880.3|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp
TTGACCCCCACTTCTTTTTCTTCTTTTATTTGTATTTTATTTTTATATGC
TGTGTGTGTGAGCACGGAGGGCAAAGTGTGTAGATATGGGCCGAGGAGAT
GCAAGCAAGTGGATTCGGAGCGAACTCTTCCTTTCCCTCGTCGTTACCCC
CTTGCCAAATTCCAGCCCGACACTTACACACATCATGCACACACACACAC
AAACAACAACAACGATGATAGGCCACCTTATCATGAAGCTCTCCGTGGCC
TTGGCCCTTTTTGCCCCGTCCCTCTCCTCGGCCTTTCTGTTGCCTGCCGG
CCTCCCCTCCCACCAGTCGACGCACCAGCAACACCAGCATCGATGTGCCG
CATCGGGTGCGTCTGCCAGAATAAAAATTGGGGGATACATGATCTAAATC
CATGCAATATCACATGTCCTAGTGTGTTCACATGCACCGGCCAGCGTGCA
TAAATCGTGCCATCTTTTCCCCTCGATCGCATCCTGACTCCCAGTCACCA
CTATCCATCCCCCCCCCCTCTCAGCGGCCCCTCGTGTCCCCGCCCCCACA
GCCCTATGGATGGCCAAGGGCAAGAGCGGCAGCAACGACAAGAAGAAGCC
TCAGGAGATGGAGATCCGCCATTGGGATGAGGATGATGAGCCGGAGTTTC
TATTGATTACGGACAGCAAGACCCAGGCCACTATCAATTGCACGGCCGAG
ACTCTCGTGACCCGCGGCGGCAAGGAGTACATGATCGGCCTGCCCATTGA
CACCCCTGTGGTAGTAGTGGACGACAAGATGAATGCCTTGGAGATGGGCT
TTGACAAGCGCCTCCCCAGTATGCTCCCCACGGTGGAAGCTACCTTGAAG
GAAATGGGTGCGACGCTCGTGCGGTCGGCGGGCACCTTGACCATCGAGGG
GGACGTGGAGATCTACGACGAGGAGGGCGAGAGGGAGGACGAGGACGAGG
ACGAGGAGGGCGATGGGCCAGATTCCTTGCCCTTTGAACAGAAGATCGAC
CCTGACTTTGCCGACCGCCCTGCGCCCCCGCCCGGGTCCACAAACGACCC
TCCATTCTACGAGTTTGACGCGCGCGACGAGAGCTACCAGGAGGACGAGG
AGGAGGACATGGAGGATATGGCCGAGCCCATCTGTGATTTTGCCCATGAG
GGCAAGACCTTCACGCTCATGAAGTTCGTCCAACCGTACTTTGTGGTGGC
CCAGCGGGCGGCAGGAGCCGAGGGGTCATGGGAACTACTGATGGGCAACC
AAGCCGAGCAAGTCTTCGACTGGGTGCTGGAGAGCGACCTGGACTACGAG
TTCCAGCTACTGGAGGACGAGAATCAGTAAAGAACCCTCAGAGGGAGATA
AGGGAGGGAGGGAGGGAGGGAATG
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protein sequence of NO10G03880.3

>NO10G03880.3-protein ID=NO10G03880.3-protein|Name=NO10G03880.3|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MAKGKSGSNDKKKPQEMEIRHWDEDDEPEFLLITDSKTQATINCTAETLV
TRGGKEYMIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLPTVEATLKEMG
ATLVRSAGTLTIEGDVEIYDEEGEREDEDEDEEGDGPDSLPFEQKIDPDF
ADRPAPPPGSTNDPPFYEFDARDESYQEDEEEDMEDMAEPICDFAHEGKT
FTLMKFVQPYFVVAQRAAGAEGSWELLMGNQAEQVFDWVLESDLDYEFQL
LEDENQ*
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mRNA from alignment at chr10:1132041..1134312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03880.3 ID=NO10G03880.3|Name=NO10G03880.3|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp|location=Sequence derived from alignment at chr10:1132041..1134312- (Nannochloropsis oceanica)
TTGACCCCCACTTCTTTTTCTTCTTTTATTTGTATTTTATTTTTATATGC
TGTGTGTGTGAGCACGGAGGGCAAAGTGTGTAGATATGGGCCGAGGAGAT
GCAAGCAAGTGGATTCGGAGCGAACTCTTCCTTTCCCTCGTCGTTACCCC
CTTGCCAAATTCCAGCCCGACACTTACACACATCATGCACACACACACAC
AAACAACAACAACGATGATAGGCCACCTTATCATGAAGCTCTCCGTGGCC
TTGGCCCTTTTTGCCCCGTCCCTCTCCTCGGCCTTTCTGTTGCCTGCCGG
CCTCCCCTCCCACCAGTCGACGCACCAGCAACACCAGCATCGATGTGCCG
CATCGGGTGCGTCTGCCAGAATAAAAATTGGGGGATACATGATCTAAATC
CATGCAATATCACATGTCCTAGTGTGTTCACATGCACCGGCCAGCGTGCA
TAAATCGTGCCATCTTTTCCCCTCGATCGCATCCTGACTCCCAGTCACCA
CTATCCATCCCCCCCCCCTCTCAGCGGCCCCTCGTGTCCCCGCCCCCACA
GCCCTATGGATGGCCAAGGGCAAGAGCGGCAGCAACGACAAGAAGAAGCC
TCAGGAGGTACGTAGCTTCATGTGTAGTACGCTGTTCTTGTGTGCTGAGG
GAGGGAGGGGTAGTAGCATGATAGCGTCATGTCACCATCCGCCTCCTCAT
CGCATCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTTCCTC
CATCCTTTCCGCTTCTCCCTAGATGGAGATCCGCCATTGGGATGAGGATG
ATGAGCCGGAGTTTCTATTGATTACGGACAGCAAGACCCAGGCCACTATC
AATTGCACGGCCGAGACTGTGAGGGGGGAGGGAGGGAGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGAGAGTGTATTCGACAGGAGTGGTAGGCATATCTT
ACAGTCAATGCAAAATGCACTTCTCTCGTAGCTGCAATCCAAATCGATCC
TTTGGTCTCATCATCCCCTTTCTACAACCTGGCATCTCTCATCTCTCCCT
CCCTTCCTCCCTCCCTCCCTCCTTCCATTTTTCCCAGCTCGTGACCCGCG
GCGGCAAGGAGTACATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTA
GTGGACGACAAGATGAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCC
CAGTATGCTCCCCACGGTACGTCTTCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTTTTTGTACCCCACGATCGCATGAGAGCAAGGGT
CACACTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCCTGCCTCTTGC
AGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGGTGCGGAGGGAGGGAGGGGAAGGCGGGAAGAGGGAG
GGAGGGAAGGAGGGTGAGTCAAAGGAGGCCCAAAACCGGAAGGGGAAACA
CGTATCCACCTCCCTCCCTCCCTCCCTCTCAGATCGACCCTGACTTTGCC
GACCGCCCTGCGCCCCCGCCCGGGTCCACAAACGACCCTCCATTCTACGA
GTTTGACGCGCGCGACGAGAGCTACCAGGAGGACGAGGAGGAGGACATGG
AGGATATGGCCGAGCCCATCTGTGATTTTGCCCATGAGGTACGCCCTCCC
TCCCTCCCTCCCTCCCTCACAAGCTTTTGTCCGAGCCGACGCCTACTCCT
TCTTCCTGATCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCT
TGCCAGGGCAAGACCTTCACGCTCATGAAGTTCGTCCAACCGTACTTTGT
GGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATGGGAACTACTGATGG
GCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGGAGAGCGGTGAGTCC
CCCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCTTGAG
ATGGAAAGAGCCCCGTTTCTGCCTTTTCACTGATGTCGCCTCTGATATCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGACCTGGACTACGAGTT
CCAGCTACTGGAGGACGAGAATCAGTAAAGAACCCTCAGAGGGAGATAAG
GGAGGGAGGGAGGGAGGGAATG
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Coding sequence (CDS) from alignment at chr10:1132041..1134312-

>NO10G03880.3 ID=NO10G03880.3|Name=NO10G03880.3|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr10:1132041..1134312- (Nannochloropsis oceanica)
ATGGCCAAGGGCAAGAGCGGCAGCAACGACAAGAAGAAGCCTCAGGAGAT
GGAGATCCGCCATTGGGATGAGGATGATGAGCCGGAGTTTCTATTGATTA
CGGACAGCAAGACCCAGGCCACTATCAATTGCACGGCCGAGACTCTCGTG
ACCCGCGGCGGCAAGGAGTACATGATCGGCCTGCCCATTGACACCCCTGT
GGTAGTAGTGGACGACAAGATGAATGCCTTGGAGATGGGCTTTGACAAGC
GCCTCCCCAGTATGCTCCCCACGGTGGAAGCTACCTTGAAGGAAATGGGT
GCGACGCTCGTGCGGTCGGCGGGCACCTTGACCATCGAGGGGGACGTGGA
GATCTACGACGAGGAGGGCGAGAGGGAGGACGAGGACGAGGACGAGGAGG
GCGATGGGCCAGATTCCTTGCCCTTTGAACAGAAGATCGACCCTGACTTT
GCCGACCGCCCTGCGCCCCCGCCCGGGTCCACAAACGACCCTCCATTCTA
CGAGTTTGACGCGCGCGACGAGAGCTACCAGGAGGACGAGGAGGAGGACA
TGGAGGATATGGCCGAGCCCATCTGTGATTTTGCCCATGAGGGCAAGACC
TTCACGCTCATGAAGTTCGTCCAACCGTACTTTGTGGTGGCCCAGCGGGC
GGCAGGAGCCGAGGGGTCATGGGAACTACTGATGGGCAACCAAGCCGAGC
AAGTCTTCGACTGGGTGCTGGAGAGCGACCTGGACTACGAGTTCCAGCTA
CTGGAGGACGAGAATCAGTAA
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Synonyms
Publications