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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:1127787..1132040 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03870.1 vs.
Match: EWM26490.1 (cellulase 2 [Nannochloropsis gaditana]) HSP 1 Score: 362.8 bits (930), Expect = 1.600e-96 Identity = 169/384 (44.01%), Postives = 240/384 (62.50%), Query Frame = 0
Query: 107 RVGGVPAAYTPSRDHADQPIKWESKEGRLWANGKHFRLKGVNWFGCETDTRYPHGLWKLKMSQVLDFLTAHGFNGIRLPFSLAMALDLG-RVNDQWLEDEDLRGLTAEQLLEKFLDKCAERGVLVMLDMHRLNELAQSEMWYDKHYTECDLLQGWDRILDVAKDKWNVFALDIKNEPYGECTWGMADVSKDWKLAAEKICNHIIKNHPTFKGLFFIEG--INRPENMACDNPCPHAAWWGGSFQGLEKARVVLEGAGSEDRIVFSPHVYGPSVFMQEYFKSEDFPANMPPIWQAHWAFAKQLTGSAVVIGEWGGWRDKPPLDAEWQEALGDFLIKNEMQDQFWWCLNPDSGDTGGLVEDDWTTPVAPKLDLLARVQPSPTQVRV 488
+ G TP+ D + W S+ G + NG+ F LKGV++FG ET PHGLW + Q+ FL FN +RLPFS A+AL+ +VN +E E L LTA +L+ +DK AE G+L+MLDMHRLNE E+WYD Y+ D+ + WD +L D+WN+FA+D+KNEP+G TWG + DW AAE++ ++ K HP +KGL F+EG + ++ D + WWGG +G+++ + L R+V+SPHVYGP F+Q YF++++FP NMP IW+ WAF ++ T AVV+GEWGG + D WQ++ FL+ ++D F+WCLNP+SGDTGGL++ D+ TP+ KL LLA+VQP PT + V
Sbjct: 51 KASGSSKVSTPA-DLCVASLDWTSEGGEILLNGQPFHLKGVSYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSTALALEPNKKVNANTIEKE-LHDLTALELIGNIIDKAAEYGILIMLDMHRLNEDFIPELWYDDKYSMDDVKEAWDNLLTAFGDRWNLFAIDLKNEPHGVATWGSGKATTDWNTAAEELATYLYKKHPQYKGLVFVEGTQLASAKHHKLDK---NNKWWGGDLEGVQEFPIDLGSDALNKRLVYSPHVYGPDAFVQPYFEAKNFPDNMPDIWKKQWAFVEEQTDRAVVVGEWGGRYENQ--DKIWQDSFAKFLVDECLEDTFYWCLNPNSGDTGGLLDYDFLTPMPKKLALLAKVQPHPTFITV 427
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03870.1 ID=NO10G03870.1|Name=NO10G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp ACAGCTGCCACTGAAAGTCGCTATGAAGCCAATAAGTATTCTCTCTGCTT CCTGGGGCGACCATGATAGCACCGCTTTTGTGGATGTCACTGCACAAGTC ACTGCCATGCTCCCCACCCCTCCCCTCACCCTGACTGTCCCCGCCACCAC TGCCGCCTTGGGCGTCGCCGACCCCGCACCTGGGCGCGTCAAGACCCTTA AAGTGCGTTATGGCTCAGGCGCCGCCGGAGCCGTTATGGAAAAATGCGCT GAAGAAGGCAGTTCATTGACAATCGGCGTCGTCGCTCCTTCTTCTCCTCC TCCTCCTTCTCCCTCAGCTCCTGTTGTCCCTCCCAAGCCGCGCGTGGGAG GTGTGCCTGCCGCCTACACGCCATCGAGGGACCACGCGGATCAGCCCATT AAGTGGGAGTCGAAAGAAGGGAGACTATGGGCGAACGGGAAGCATTTTCG ATTGAAAGGCGTTAACTGGTTCGGGTGCGAAACGGACACCCGTTATCCGC ACGGCCTCTGGAAGCTCAAGATGTCCCAAGTGCTCGACTTTTTGACCGCC CACGGTTTTAATGGTATCCGTCTACCGTTCTCCCTGGCCATGGCCCTGGA CCTGGGCAGGGTAAATGACCAGTGGCTGGAAGACGAGGACTTGAGGGGCT TGACCGCCGAGCAGCTGCTGGAGAAGTTCCTGGACAAGTGTGCCGAGCGG GGGGTGTTGGTAATGCTGGACATGCACCGCCTCAACGAGCTGGCGCAGAG CGAGATGTGGTACGACAAACACTACACGGAGTGTGACCTCCTGCAGGGGT GGGACCGGATCCTGGACGTGGCCAAGGACAAGTGGAATGTGTTCGCCCTT GACATTAAAAACGAGCCGTACGGAGAGTGCACGTGGGGCATGGCCGACGT GTCCAAGGACTGGAAGCTGGCTGCGGAGAAGATATGCAACCACATCATAA AAAATCACCCAACTTTCAAAGGCCTCTTCTTCATCGAAGGCATCAACAGG CCCGAGAACATGGCGTGTGACAATCCCTGTCCACACGCCGCCTGGTGGGG AGGAAGTTTCCAGGGCCTGGAGAAGGCACGGGTGGTGCTGGAGGGGGCGG GCTCAGAAGATCGGATCGTGTTTTCCCCCCACGTGTACGGACCCAGTGTC TTTATGCAGGAGTACTTTAAGTCCGAGGATTTCCCTGCCAATATGCCCCC CATATGGCAGGCCCACTGGGCCTTTGCCAAGCAGCTGACGGGCTCGGCCG TGGTTATTGGGGAGTGGGGGGGCTGGCGGGACAAGCCTCCCCTGGACGCA GAGTGGCAAGAGGCTCTCGGCGACTTCCTCATAAAGAACGAGATGCAGGA CCAATTCTGGTGGTGCCTGAATCCGGACAGCGGCGATACGGGAGGGCTGG TGGAGGATGATTGGACTACACCCGTAGCCCCCAAACTGGACTTACTCGCC CGTGTGCAGCCGTCCCCTACTCAAGTGAGGGTGGATAAGGCAGGCAAGGT GACATTTTCCTGAGGAGGGAGGGGGGGAGGGGGGGAGAGAGGGATGAATT GTGGTAATACTATATTTAGAAAAAATTTAGATGGCAAAGCACGAGAAAGA GCGAGTGTGTGATCTGTGGAGCGGAAGAGGGACGAGGGAGGGAGAGAGAG GAAGAGGGAGTAGGAGAGGGCGAGAGTGAAAGAATGTGCTATGTGGAGCG GAAGAAGGAAGAGACCAAGGAAGAAGAGGCAGTAGACAGGAAATTGCAAG CATTTGCGTATGTGTATTCAGCTGTGTGTGTTGTGGTAATGATGATTCGG ACTGGAAAAAGGGAGAAGGAGAGAAAGAGGAAGACTCAAAGAGATGGAGA GAGGGCGGGAGGGTGAAAACAAAACCGAGGGCTTTTTGACCGTTGGAATG AAGGGAGAAGAAATGGCATAGCTAGAGCAGCCGCAGCGACAGGAGCAGCA GCAGATGATGGCCTGGTTTCCCTCTTTTTTAGCTTTCACTTCGTTTGTGT CTTCTTGTCATGCACACCTCCCCTCCCTACCTCCCTCCCTTGTTCCCTCC CTCCTCCCTCCCCCTTCCATCTACGCTTGCATTTTGTCTATAACGAGGCC CAGCCCTCCCT back to topprotein sequence of NO10G03870.1 >NO10G03870.1-protein ID=NO10G03870.1-protein|Name=NO10G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp MKPISILSASWGDHDSTAFVDVTAQVTAMLPTPPLTLTVPATTAALGVAD PAPGRVKTLKVRYGSGAAGAVMEKCAEEGSSLTIGVVAPSSPPPPSPSAP VVPPKPRVGGVPAAYTPSRDHADQPIKWESKEGRLWANGKHFRLKGVNWF GCETDTRYPHGLWKLKMSQVLDFLTAHGFNGIRLPFSLAMALDLGRVNDQ WLEDEDLRGLTAEQLLEKFLDKCAERGVLVMLDMHRLNELAQSEMWYDKH YTECDLLQGWDRILDVAKDKWNVFALDIKNEPYGECTWGMADVSKDWKLA AEKICNHIIKNHPTFKGLFFIEGINRPENMACDNPCPHAAWWGGSFQGLE KARVVLEGAGSEDRIVFSPHVYGPSVFMQEYFKSEDFPANMPPIWQAHWA FAKQLTGSAVVIGEWGGWRDKPPLDAEWQEALGDFLIKNEMQDQFWWCLN PDSGDTGGLVEDDWTTPVAPKLDLLARVQPSPTQVRVDKAGKVTFS* back to topmRNA from alignment at chr10:1127787..1132040+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03870.1 ID=NO10G03870.1|Name=NO10G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=4254bp|location=Sequence derived from alignment at chr10:1127787..1132040+ (Nannochloropsis oceanica) ACAGCTGCCACTGAAAGTCGCTATGAAGCCAATAAGTATTCTCTCTGCTT
CCTGGGGCGACCATGATAGCACCGCGTAAGTAATCCACCCTGCAATGGAA
TCTAATGTCCGACCTGCCGTCTCCCTTGCCAAAGGCCCTTCACTCCCCCC
CGCACGCCCCCATTATCCCTCCTTCGGAATCAGTACCACATCCCCTCGAT
TCCTCGCTATTTATTGTGCCAAGCACGGGTTTACTGTCCGACTCTCCCTC
CGCTCCTCCCGCCCACCCTCCCTCCCTCTTTACCTGTCCCGACCGCTTTA
TCCCTCCTCAAACCGTCTTTCACATCCTCTGCCCACTTCCCTATACCCAC
CACGACTCAGTTTTGTGGATGTCACTGCACAAGTCACTGCCATGCTCCCC
ACCCCTCCCCTCACCCTGACTGTCCCCGCCACCACTGCCGCCTTGGGCGT
CGCCGACCCCGCACCTGGGCGCGTCAAGACCCTTAAAGTGCGTTATGGCT
CAGGCGCCGCCGGAGCCGTTATGGAAAAATGCGCTGAAGAAGGCAGTTCA
TTGACAATCGGCGTCGTCGCTCCTTCTTCTCCTCCTCCTCCTTCTCCCTC
AGCTCCTGTTGTCCCTCCCAAGCCGCGCGTGGGAGGTGTGCCTGCCGCCT
ACACGCCATCGAGGGACCACGCGGATCAGCCCATTAAGTGGGAGTCGAAA
GAAGGGAGACTATGGGCGAACGGGAAGCATTTTCGATTGAAAGGTAGGGT
ATATAGGTGCCTTAAATTGAGTGCGTATCCTAGGGAGGAGGGCAGGGCCA
AACCTGTGTATTCGATCGGTGGTGTATTCCCCATTGCCATGTCCCCACCC
TCACACAGGCGTTAACTGGTTCGGGTGCGAAACGGACACCCGTTATCCGC
ACGGCCTCTGGAAGCTCAAGGTGAGAAAGGGAGGGAGGGAGGCGGAGGAA
GAATGCTGAGTCGGGACAAGAACAACAGCCAGCAGCAAGAGACCAACCCA
CCCTCCGTCCGTTTGTCCGTCCGTCCGTCCCTCCCTCCCTCCCTCTCCCC
CTCCCTCCTTGTCCACAGATGTCCCAAGTGCTCGACTTTTTGACCGCCCA
CGGTTTTAATGGTATCCGTCTACCGTTCTCCCTGGCCATGGCCCTGGACC
TGGGCAGGGTAAATGACCAGTGGCTGGAAGACGAGGACTTGAGGGGCTTG
ACCGCCGAGCAGCTGCTGGAGAAGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGAAGGGAGGATGGATGAAGTGCTTAATTTCTGGACTTGCGCATAG
AACTCACCCTACGTTCCCTCCTCCCTCCATCCCTCCCTCCCTCCCTTCCT
CCCTCCCACCTTCCCTTCCCAGGTTCCTGGACAAGTGTGCCGAGCGGGGG
GTGTTGGTAATGCTGGACATGCACCGCCTCAACGAGCTGGCGCAGAGCGA
GATGTGGTACGACAAACACTACACGGAGTGTGACCTCCTGCAGGGGTGGG
ACCGGATCCTGGACGTGGCCAAGGACAAGGTGAGAGGGAGGGAGGGAGGA
AGGGGAGTGGGTGAGATGCGGTACGACAAACACTACAAGGACCCCCCCTC
CCTCCCTGCTTCGCTCGCTCCCTCCCTCCAGTCTCACTGCGCAGCCATAT
TCTTCTCTTTCCCCCCTTCTCTTCCTTCCAGTCGTAATCCCCTCTCCTTC
TGCCTCCGTTGCCTCGTCTTTTAACCCCACCCTCTCGTCATTGATTCCTG
TTCTCAAACTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CGAAGTGGAATGTGTTCGCCCTTGACATTAAAAACGAGCCGTACGGAGAG
TGCACGTGGGGCATGGCCGACGTGTCCAAGGACTGGAAGCTGGCTGCGGA
GAAGATATGCAACCACATCATGTGAGGAGGAGGGGAGGAGGGAGGGAGGT
GCGGGCGAATTTATCATTTTTCTGCGTTCATTCATTCCTGGATTCTTCCA
TTTCTTCCTTTCTTCCTTTCTGTCCTTTCTTTCCTTCCTTGTTCCCGCCT
TTATTCTTCGTAGAAAAAATCACCCAACTTTCAAAGGCCTCTTCTTCATC
GAAGGCATCAACAGGGTAAGCCCTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCGCCCGCCCGCCCGCCCGCCCAAGAGCAGCCTACC
CTAGGATTTGTCCTTCTTTTCTTTCCCCTTCTCCTTATGCCAGAACTGCC
AGAGAGAAGCCACTCATACGCCTCCCTCCCTCCCTCCCTCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCTCC
CTCTCTCCCTCCCTCCCTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCTCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCCGAGAACATGGCGTGTGA
CAATCCCTGTCCACACGCCGCCTGGTGGGGAGGAAGTTTCCAGGGCCTGG
AGAAGGCACGGGTGGTGCTGGAGGGGGCGGGCTCAGAAGATCGGATCGTG
TTTTCCCCCCACGTGTACGGACCCAGGTAGGTAGGGAGGTAGGGAGGGAG
GGAGGTAGGGAGGGAGGGAGGGAGGGAGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGAGAGGGAGGGAGAGAGGGAGGGAGGGGAACAAGGACAGGGAGAA
TCGAAGTCCAGGGACGCACGTCGGGAAATCTTACCCTCCCTCTCTCCTTC
CCTCCCTCCCTCCCCCCCTCTCTCCCTCCCGCCCTCTGTTCAGTGTCTTT
ATGCAGGAGTACTTTAAGTCCGAGGATTTCCCTGCCAATATGCCCCCCAT
ATGGCAGGCCCACTGGGCCTTTGCCAAGCAGCTGACGGGCTCGGCCGTGG
TTATTGGGGAGTGGGGGGGCTGGTGAGAAGGAGGGAAGAGGGGGAGGGAG
GGAGGGAGGGGGGATGCGGTAGTCTCAAGATTTGCGTGGGGCGGCAGATA
TCTTCCTTCTGTCTGCTTAAGTAACCCTCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTGCAGGCGGGACAAGCCTC
CCCTGGACGCAGAGTGGCAAGAGGCTCTCGGCGACTTCCTCATAAAGAAC
GAGATGCAGGACCAATTCTGGTGGTGCCTGAATCCGGACAGGTAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGTTGCCCGTATGTGTATGTCCAAGTC
GTCCGCTAGACCGTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCT
CTCTCCCTCCCTCCCTCCTGCAGCGGCGATACGGGAGGGCTGGTGGAGGA
TGATTGGACTACACCCGTAGCCCCCAAACTGGACTTACTCGCCCGTGTGC
AGCCGTCCCCTACTCAAGTGAGGGTGGATAAGGCAGGCAAGGTGACATTT
TCCTGAGGAGGGAGGGGGGGAGGGGGGGAGAGAGGGATGAATTGTGGTAA
TACTATATTTAGAAAAAATTTAGATGGCAAAGCACGAGAAAGAGCGAGTG
TGTGATCTGTGGAGCGGAAGAGGGACGAGGGAGGGAGAGAGAGGAAGAGG
GAGTAGGAGAGGGCGAGAGTGAAAGAATGTGCTATGTGGAGCGGAAGAAG
GAAGAGACCAAGGAAGAAGAGGCAGTAGACAGGAAATTGCAAGCATTTGC
GTATGTGTATTCAGCTGTGTGTGTTGTGGTAATGATGATTCGGACTGGAA
AAAGGGAGAAGGAGAGAAAGAGGAAGACTCAAAGAGATGGAGAGAGGGCG
GGAGGGTGAAAACAAAACCGAGGGCTTTTTGACCGTTGGAATGAAGGGAG
AAGAAATGGCATAGCTAGAGCAGCCGCAGCGACAGGAGCAGCAGCAGATG
ATGGCCTGGTTTCCCTCTTTTTTAGCTTTCACTTCGTTTGTGTCTTCTTG
TCATGCACACCTCCCCTCCCTACCTCCCTCCCTTGTTCCCTCCCTCCTCC
CTCCCCCTTCCATCTACGCTTGCATTTTGTCTATAACGAGGCCCAGCCCT
CCCT back to topCoding sequence (CDS) from alignment at chr10:1127787..1132040+ >NO10G03870.1 ID=NO10G03870.1|Name=NO10G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr10:1127787..1132040+ (Nannochloropsis oceanica) ATGAAGCCAATAAGTATTCTCTCTGCTTCCTGGGGCGACCATGATAGCAC CGCTTTTGTGGATGTCACTGCACAAGTCACTGCCATGCTCCCCACCCCTC CCCTCACCCTGACTGTCCCCGCCACCACTGCCGCCTTGGGCGTCGCCGAC CCCGCACCTGGGCGCGTCAAGACCCTTAAAGTGCGTTATGGCTCAGGCGC CGCCGGAGCCGTTATGGAAAAATGCGCTGAAGAAGGCAGTTCATTGACAA TCGGCGTCGTCGCTCCTTCTTCTCCTCCTCCTCCTTCTCCCTCAGCTCCT GTTGTCCCTCCCAAGCCGCGCGTGGGAGGTGTGCCTGCCGCCTACACGCC ATCGAGGGACCACGCGGATCAGCCCATTAAGTGGGAGTCGAAAGAAGGGA GACTATGGGCGAACGGGAAGCATTTTCGATTGAAAGGCGTTAACTGGTTC GGGTGCGAAACGGACACCCGTTATCCGCACGGCCTCTGGAAGCTCAAGAT GTCCCAAGTGCTCGACTTTTTGACCGCCCACGGTTTTAATGGTATCCGTC TACCGTTCTCCCTGGCCATGGCCCTGGACCTGGGCAGGGTAAATGACCAG TGGCTGGAAGACGAGGACTTGAGGGGCTTGACCGCCGAGCAGCTGCTGGA GAAGTTCCTGGACAAGTGTGCCGAGCGGGGGGTGTTGGTAATGCTGGACA TGCACCGCCTCAACGAGCTGGCGCAGAGCGAGATGTGGTACGACAAACAC TACACGGAGTGTGACCTCCTGCAGGGGTGGGACCGGATCCTGGACGTGGC CAAGGACAAGTGGAATGTGTTCGCCCTTGACATTAAAAACGAGCCGTACG GAGAGTGCACGTGGGGCATGGCCGACGTGTCCAAGGACTGGAAGCTGGCT GCGGAGAAGATATGCAACCACATCATAAAAAATCACCCAACTTTCAAAGG CCTCTTCTTCATCGAAGGCATCAACAGGCCCGAGAACATGGCGTGTGACA ATCCCTGTCCACACGCCGCCTGGTGGGGAGGAAGTTTCCAGGGCCTGGAG AAGGCACGGGTGGTGCTGGAGGGGGCGGGCTCAGAAGATCGGATCGTGTT TTCCCCCCACGTGTACGGACCCAGTGTCTTTATGCAGGAGTACTTTAAGT CCGAGGATTTCCCTGCCAATATGCCCCCCATATGGCAGGCCCACTGGGCC TTTGCCAAGCAGCTGACGGGCTCGGCCGTGGTTATTGGGGAGTGGGGGGG CTGGCGGGACAAGCCTCCCCTGGACGCAGAGTGGCAAGAGGCTCTCGGCG ACTTCCTCATAAAGAACGAGATGCAGGACCAATTCTGGTGGTGCCTGAAT CCGGACAGCGGCGATACGGGAGGGCTGGTGGAGGATGATTGGACTACACC CGTAGCCCCCAAACTGGACTTACTCGCCCGTGTGCAGCCGTCCCCTACTC AAGTGAGGGTGGATAAGGCAGGCAAGGTGACATTTTCCTGA back to top
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