NO10G03550.1, NO10G03550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03550.1
Unique NameNO10G03550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length273
Alignment locationchr10:1008238..1009105 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1008238..1009105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03550.1 vs.
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526]; EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 109.8 bits (273), Expect = 4.600e-21
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0 
Query:    1 MTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 82
            MTELV RVE GD  A  +L D +ADSLW   IDLSE KGK P+ ++ LR+I M E+P  FDLITG+DPLV+KVL+DPSMLF
Sbjct:  188 MTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268
The following BLAST results are available for this feature:
BLAST of NO10G03550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854419.14.600e-2164.20hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03550NO10G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03550.1NO10G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03550.1.cds1NO10G03550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03550.1.cds2NO10G03550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03550.1.cds3NO10G03550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03550.1.cds4NO10G03550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03550.1 ID=NO10G03550.1|Name=NO10G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=273bp
ATGACTGAGCTTGTCGCCCGCGTCGAGAATGGCGACTCTGCCGCCGTCGA
TGAACTTCAAGACAACGTGGCCGACAGCTTGTGGAATGGAGCTATCGATC
TCTCGGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAA
ATCACCATGGACGAGGATCCGGCGTTCTTCGACCTCATCACGGGCGACGA
CCCTCTTGTGAAAAAGGTGCTCACGGATCCCAGCATGCTCTTCGGAGTCG
GGGCTTCCATGGGCGACCAGTAA
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protein sequence of NO10G03550.1

>NO10G03550.1-protein ID=NO10G03550.1-protein|Name=NO10G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQ
ITMDEDPAFFDLITGDDPLVKKVLTDPSMLFGVGASMGDQ*
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mRNA from alignment at chr10:1008238..1009105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03550.1 ID=NO10G03550.1|Name=NO10G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=868bp|location=Sequence derived from alignment at chr10:1008238..1009105+ (Nannochloropsis oceanica)
ATGACTGAGCTTGTCGCCCGCGTCGAGGTATGTTTCTGTCTTTGTGTGGC
GATACGTCATCCCTTCATTGCGTTCCTTATCCCTCGGCTGACATTTCTCA
TATGAATTTAACGTGCACCCACCCACAGAATGGCGACTCTGCCGCCGTCG
ATGAACTTCAAGACAACGTGGCCGACAGCTTGTGGAATGGAGGTAAGCAC
ACGATACTTTTCGCAATATGTGGGTGTGTGAATGGGGCGTTTATCCTCAC
CTACGTGACCTCTTTCATTCTGTATAGCTATTCCTGGGGGCTTTCGTATG
CGATGAAATGAGTTGTGGGAAGGCTACATGCTTGCGGATGAATGTCCTTT
GCTATTCTTTCTCTGAAATGTCTGGTCTCAGTCAACTTTCTACGTGATAC
TCCACTCCAACAACCACTCCCCGCCTCGTCTAGTTTTTCCCCCCATCACA
CCTTCCTTGCGATAGCCACGGCTTTGTTCTAATCAATATCAAGCGTCATT
TCTGCTGGGTGACTAAATTTCGTCACTCTGGATGACAAAGTTTCTCTCTC
AATGATTCACCCTTTTCTTCCCCACTCTCTAACCCCGCCCAGCTATCGAT
CTCTCGGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCA
AATCACCATGGACGAGGATCCGGCGTTCTTCGACCTCATCACGGGCGACG
ACCCTCTTGTGAAAAAGTACGTTCAAAGAGAGAAAAGCAGAGAAGGGGAA
GGGAGAAAAAGGCAAGCAGCACAGGCACTTACTTTGTATTTCTACACAAC
CATTACATAGGGTGCTCACGGATCCCAGCATGCTCTTCGGAGTCGGGGCT
TCCATGGGCGACCAGTAA
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Coding sequence (CDS) from alignment at chr10:1008238..1009105+

>NO10G03550.1 ID=NO10G03550.1|Name=NO10G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at chr10:1008238..1009105+ (Nannochloropsis oceanica)
ATGACTGAGCTTGTCGCCCGCGTCGAGAATGGCGACTCTGCCGCCGTCGA
TGAACTTCAAGACAACGTGGCCGACAGCTTGTGGAATGGAGCTATCGATC
TCTCGGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAA
ATCACCATGGACGAGGATCCGGCGTTCTTCGACCTCATCACGGGCGACGA
CCCTCTTGTGAAAAAGGTGCTCACGGATCCCAGCATGCTCTTCGGAGTCG
GGGCTTCCATGGGCGACCAGTAA
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Synonyms
Publications