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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:916495..918774 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03280.1 vs.
Match: EWM25552.1 (hypothetical protein Naga_100130g4 [Nannochloropsis gaditana]) HSP 1 Score: 147.9 bits (372), Expect = 1.300e-31 Identity = 230/773 (29.75%), Postives = 343/773 (44.37%), Query Frame = 0
Query: 5 REEQRREEEEESAAFIAARCQQTRRRALRRWLSLVKERMERWEIEDQGLALQQEKCLR---RCLDVWAKMTMISMRQRGREKVGVAAW-KGQQKRGWVAFQKMMHRKEWNRRNDVQARWLWLQQRQALTLVRWVY--WTRGQKSRKRREREGGKEGLWQWKGWREGWAFKRWRIWVHRHRKKRQQRALTEAEERRLKLLQSAYPTWHISGGNSNGRSCTALFEGRRDRGEIGEGGRRHFPTPRPWNGDGAGWNAYGTGGRGHLALSGGNKNRSSSSHSYRAFLSVSAASVSPPASTR-ERTLLSS--SSLPTATPSSFDSSSSFSRSLPILPPSQRGSLRPPPRRPLEVVLEAQGVQVPAWILREMHSHVVNE-KQEVKEVESVAMARESGRMTSTAEVVESTAAPAAAALAGGRQAMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSSRSPGTGMLPSFFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGLTDITTYATSTAAPATGTD-VCGSYYNAGTRRAPPRRGRDEDREGSGERGGRMKEMEMR-------KEEGDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQNVLKEEGVVEEKEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQRRHHPGQQKKEQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVGS------LRRRQQEERLQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGARLTT 754
+E +R E E A + CQ ALR W LV+ + E D+G KC R RCL WA+ TM M QR + + G A+ K + +GW A+ + + +A LW ++ + L +W W G++ R+ ER G+E +WQWK RE A++ W+IW RHR +R +R +AE R+ KL+++A W G ++ + CT G G GRR P PRPW G+ +G G + G NR + + S P R ER SS SSLP S SS+ F+R P R PRRPLE++LE+ GV+VP WI E+ + + +E+ + +E S V S GGR T +VE++ RG G S+ +P P T PT+P + SS+ SFPG+ + A + P G + S +G A P G + D ERG R++ +EM + EG E + + +V G G DG +++ E E+ E ++L ILEARLRGWMMERERFE AR E E + + ++ + +S ++SL +S+S L + T + S +T + R R+QEER++EL +V+REYE WQ++T+PLI+ V+ ++ + KL++S + TT
Sbjct: 502 QEAKRVRMEWEEACWRRKVCQ-----ALRVWEGLVRRKKEE---RDRGRRTLAWKCSRGQDRCLQRWARRTMADMWQRAKVECGQQAYGKRGEAKGWEAWSMGTQSLKAFHEQEERAGRLWAHRQVSWALRKWTCGAWELGEQRRRAWER--GREAMWQWKERREAGAWRAWKIWAARHRLERARRVQQQAEARQAKLVEAATSWWR--GASTGAKVCTWRTCAV---GIKGPKGRRLLPPPRPWTGEDIQIRHHGIRSAGGTSWGGSVDNRVRNPR-------LDTVSWQGPIHDRIERDGRSSFASSLPIPPFLSSSSSAHFTRIGP----------RCQPRRPLELMLESYGVRVPPWIAEELRTREASAVDEEISQTSHRGTRKERNDQLSACSFVPS----------GGR--------TRSVEDR------------RGDPPGKSI-----TTPAPPFCPRTDT-------LVPTAPRDV--------SSTVGCSPSFPGVDAVGIEALGKSGPDLGAGALVASAPKSGI--ALPMEGMENDGR-KRERGERVEGLEMDAVSTLVWENEGGEDRERDTLDVQAGG--GGDGDTEEDVGACENAED---------------IEGDELDILEARLRGWMMERERFEHARKEFESRKQDKLKQESRQQEPPSSDSSLSAASLDVSSSHPMVHLDRHTSNRLEGSEDHNTEGHNPSDRTQRRNRRQEERMEELHDVMREYEMWQKKTMPLIQAVYERVRRKKLQLSEGKETT 1172
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03280.1 ID=NO10G03280.1|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG CTGACGACAACAACGACTGCTTCTATCTGA back to topprotein sequence of NO10G03280.1 >NO10G03280.1-protein ID=NO10G03280.1-protein|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp MWKVREEQRREEEEESAAFIAARCQQTRRRALRRWLSLVKERMERWEIED QGLALQQEKCLRRCLDVWAKMTMISMRQRGREKVGVAAWKGQQKRGWVAF QKMMHRKEWNRRNDVQARWLWLQQRQALTLVRWVYWTRGQKSRKRREREG GKEGLWQWKGWREGWAFKRWRIWVHRHRKKRQQRALTEAEERRLKLLQSA YPTWHISGGNSNGRSCTALFEGRRDRGEIGEGGRRHFPTPRPWNGDGAGW NAYGTGGRGHLALSGGNKNRSSSSHSYRAFLSVSAASVSPPASTRERTLL SSSSLPTATPSSFDSSSSFSRSLPILPPSQRGSLRPPPRRPLEVVLEAQG VQVPAWILREMHSHVVNEKQEVKEVESVAMARESGRMTSTAEVVESTAAP AAAALAGGRQAMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSS RSPGTGMLPSFFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGL TDITTYATSTAAPATGTDVCGSYYNAGTRRAPPRRGRDEDREGSGERGGR MKEMEMRKEEGDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQN VLKEEGVVEEKEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQ RRHHPGQQKKEQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVG SLRRRQQEERLQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGAR LTTTTTASI* back to topmRNA from alignment at chr10:916495..918774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03280.1 ID=NO10G03280.1|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp|location=Sequence derived from alignment at chr10:916495..918774+ (Nannochloropsis oceanica) ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC
TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC
GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT
CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT
GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG
TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT
CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC
CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG
TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA
GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT
TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC
GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT
TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC
CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA
GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG
AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA
TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT
CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA
TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC
CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC
TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA
GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA
CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA
GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT
GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC
CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA
GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC
CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC
TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT
CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT
ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC
CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA
GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA
ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA
ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC
AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT
GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT
GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT
TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA
CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC
CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG
CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG
AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT
CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG
GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG
CTGACGACAACAACGACTGCTTCTATCTGA back to topCoding sequence (CDS) from alignment at chr10:916495..918774+ >NO10G03280.1 ID=NO10G03280.1|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at chr10:916495..918774+ (Nannochloropsis oceanica) ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG CTGACGACAACAACGACTGCTTCTATCTGA back to top
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