NO10G03280.1, NO10G03280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03280.1
Unique NameNO10G03280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2280
Alignment locationchr10:916495..918774 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:916495..918774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G03280.1 vs.
Match: EWM25552.1 (hypothetical protein Naga_100130g4 [Nannochloropsis gaditana])

HSP 1 Score: 147.9 bits (372), Expect = 1.300e-31
Identity = 230/773 (29.75%), Postives = 343/773 (44.37%), Query Frame = 0
Query:    5 REEQRREEEEESAAFIAARCQQTRRRALRRWLSLVKERMERWEIEDQGLALQQEKCLR---RCLDVWAKMTMISMRQRGREKVGVAAW-KGQQKRGWVAFQKMMHRKEWNRRNDVQARWLWLQQRQALTLVRWVY--WTRGQKSRKRREREGGKEGLWQWKGWREGWAFKRWRIWVHRHRKKRQQRALTEAEERRLKLLQSAYPTWHISGGNSNGRSCTALFEGRRDRGEIGEGGRRHFPTPRPWNGDGAGWNAYGTGGRGHLALSGGNKNRSSSSHSYRAFLSVSAASVSPPASTR-ERTLLSS--SSLPTATPSSFDSSSSFSRSLPILPPSQRGSLRPPPRRPLEVVLEAQGVQVPAWILREMHSHVVNE-KQEVKEVESVAMARESGRMTSTAEVVESTAAPAAAALAGGRQAMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSSRSPGTGMLPSFFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGLTDITTYATSTAAPATGTD-VCGSYYNAGTRRAPPRRGRDEDREGSGERGGRMKEMEMR-------KEEGDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQNVLKEEGVVEEKEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQRRHHPGQQKKEQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVGS------LRRRQQEERLQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGARLTT 754
            +E +R   E E A +    CQ     ALR W  LV+ + E     D+G      KC R   RCL  WA+ TM  M QR + + G  A+ K  + +GW A+       +     + +A  LW  ++ +  L +W    W  G++ R+  ER  G+E +WQWK  RE  A++ W+IW  RHR +R +R   +AE R+ KL+++A   W   G ++  + CT         G  G  GRR  P PRPW G+      +G    G  +  G   NR  +         +   S   P   R ER   SS  SSLP     S  SS+ F+R  P          R  PRRPLE++LE+ GV+VP WI  E+ +   +   +E+ +       +E     S    V S          GGR        T +VE++            RG   G S+      +P     P   T         PT+P  +        SS+     SFPG+  +   A   + P  G   +  S   +G   A P  G + D     ERG R++ +EM        + EG E + +   +V  G   G DG  +++    E  E+                E ++L ILEARLRGWMMERERFE AR E E  +  + ++     +     +S  ++SL +S+S     L + T +    S   +T   +       R R+QEER++EL +V+REYE WQ++T+PLI+ V+ ++ + KL++S  + TT
Sbjct:  502 QEAKRVRMEWEEACWRRKVCQ-----ALRVWEGLVRRKKEE---RDRGRRTLAWKCSRGQDRCLQRWARRTMADMWQRAKVECGQQAYGKRGEAKGWEAWSMGTQSLKAFHEQEERAGRLWAHRQVSWALRKWTCGAWELGEQRRRAWER--GREAMWQWKERREAGAWRAWKIWAARHRLERARRVQQQAEARQAKLVEAATSWWR--GASTGAKVCTWRTCAV---GIKGPKGRRLLPPPRPWTGEDIQIRHHGIRSAGGTSWGGSVDNRVRNPR-------LDTVSWQGPIHDRIERDGRSSFASSLPIPPFLSSSSSAHFTRIGP----------RCQPRRPLELMLESYGVRVPPWIAEELRTREASAVDEEISQTSHRGTRKERNDQLSACSFVPS----------GGR--------TRSVEDR------------RGDPPGKSI-----TTPAPPFCPRTDT-------LVPTAPRDV--------SSTVGCSPSFPGVDAVGIEALGKSGPDLGAGALVASAPKSGI--ALPMEGMENDGR-KRERGERVEGLEMDAVSTLVWENEGGEDRERDTLDVQAGG--GGDGDTEEDVGACENAED---------------IEGDELDILEARLRGWMMERERFEHARKEFESRKQDKLKQESRQQEPPSSDSSLSAASLDVSSSHPMVHLDRHTSNRLEGSEDHNTEGHNPSDRTQRRNRRQEERMEELHDVMREYEMWQKKTMPLIQAVYERVRRKKLQLSEGKETT 1172          
The following BLAST results are available for this feature:
BLAST of NO10G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25552.11.300e-3129.75hypothetical protein Naga_100130g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03280NO10G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03280.1NO10G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03280.1.cds1NO10G03280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03280.1 ID=NO10G03280.1|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp
ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC
TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC
GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT
CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT
GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG
TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT
CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC
CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG
TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA
GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT
TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC
GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT
TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC
CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA
GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG
AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA
TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT
CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA
TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC
CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC
TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA
GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA
CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA
GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT
GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC
CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA
GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC
CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC
TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT
CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT
ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC
CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA
GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA
ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA
ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC
AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT
GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT
GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT
TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA
CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC
CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG
CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG
AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT
CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG
GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG
CTGACGACAACAACGACTGCTTCTATCTGA
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protein sequence of NO10G03280.1

>NO10G03280.1-protein ID=NO10G03280.1-protein|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MWKVREEQRREEEEESAAFIAARCQQTRRRALRRWLSLVKERMERWEIED
QGLALQQEKCLRRCLDVWAKMTMISMRQRGREKVGVAAWKGQQKRGWVAF
QKMMHRKEWNRRNDVQARWLWLQQRQALTLVRWVYWTRGQKSRKRREREG
GKEGLWQWKGWREGWAFKRWRIWVHRHRKKRQQRALTEAEERRLKLLQSA
YPTWHISGGNSNGRSCTALFEGRRDRGEIGEGGRRHFPTPRPWNGDGAGW
NAYGTGGRGHLALSGGNKNRSSSSHSYRAFLSVSAASVSPPASTRERTLL
SSSSLPTATPSSFDSSSSFSRSLPILPPSQRGSLRPPPRRPLEVVLEAQG
VQVPAWILREMHSHVVNEKQEVKEVESVAMARESGRMTSTAEVVESTAAP
AAAALAGGRQAMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSS
RSPGTGMLPSFFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGL
TDITTYATSTAAPATGTDVCGSYYNAGTRRAPPRRGRDEDREGSGERGGR
MKEMEMRKEEGDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQN
VLKEEGVVEEKEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQ
RRHHPGQQKKEQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVG
SLRRRQQEERLQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGAR
LTTTTTASI*
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mRNA from alignment at chr10:916495..918774+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03280.1 ID=NO10G03280.1|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp|location=Sequence derived from alignment at chr10:916495..918774+ (Nannochloropsis oceanica)
ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG CTGACGACAACAACGACTGCTTCTATCTGA
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Coding sequence (CDS) from alignment at chr10:916495..918774+

>NO10G03280.1 ID=NO10G03280.1|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at chr10:916495..918774+ (Nannochloropsis oceanica)
ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC
TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC
GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT
CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT
GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG
TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT
CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC
CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG
TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA
GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT
TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC
GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT
TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC
CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA
GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG
AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA
TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT
CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA
TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC
CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC
TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA
GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA
CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA
GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT
GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC
CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA
GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC
CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC
TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT
CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT
ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC
CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA
GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA
ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA
ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC
AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT
GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT
GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT
TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA
CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC
CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG
CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG
AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT
CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG
GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG
CTGACGACAACAACGACTGCTTCTATCTGA
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Synonyms
Publications