NO10G03150.1, NO10G03150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03150.1
Unique Name	NO10G03150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2908
Alignment location	chr10:883546..886889 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:883546..886889 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G03150.1 vs.
Match: XP_005757099.1 (hypothetical protein EMIHUDRAFT_453794 [Emiliania huxleyi CCMP1516]; EOD04670.1 hypothetical protein EMIHUDRAFT_453794 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 198.7 bits (504), Expect = 3.700e-47
Identity = 141/426 (33.10%), Postives = 210/426 (49.30%), Query Frame = 0

Query:   24 AVLNLVACCSVGVTASKARVLDQQAISALSRLVYNVFQPSLLFTNVLQTLATPNQSHGILLLLPLAAALQILAAGALSGVLLRLVGLDPRSETGREARICSTFANAGPLPLLFVDALFKNHPDPTLRPRAVAFISFYLLAWSPLFWNYGYGILIGGEGVGGRKGGDVQRAQVTMNKKDLGAPGVIGVDGLTGSGNGAGRMMEEGIGSWKEGSAATLAYTQLQIQEKCAQDPAMFVLARMRRFWGSRAIKKLLNPPTLGCTVGALVGVIPPMRRLFVGDGAPLSC-------IFAALRTMSSAYVPCVLLVLSGSLA------QGLEGFDRSILRRAALVMFQRFCLMPAFALAMVEAGKRIGLLPSGDPLLIFVLLLQGCMPSAQNSVLILQLERRPHAATSMARLISTVYVLSILPIGLLIRALL 437
            ++  L+  C++G  A+KA  L    I +L+ +V+NVF P++L T+V  T+A   Q+   L ++P+AA  Q+    +++ V L L+ L  RS  GR   + S+F NAG LPLLFV +LF+       R RA + ++ +LL WSPLFW  GY +L G   +          A+                         A       +      +AAT A   L +    A        AR+R+   S  +++ L+PP   C  G +VG  PP+R   +   AP +        +F  L  +  AY P  LLVL+GSLA      +  EG   +       +   RFC +P  + A++ A  R GLLP+ DPL   VLLLQ CMPSAQNSVL LQ++  P  A  MAR++  +Y+++ LP+  ++  LL
Sbjct:   72 SMAELLTSCAIGYGATKAGYLSGSQIRSLAGVVFNVFLPAMLLTSVASTVAE-QQAGAALAVMPIAAWAQVAVGASVASVSLALLRLPRRSSAGRGVSVLSSFGNAGVLPLLFVSSLFRGAAQEATRRRATSLVAMFLLGWSPLFWTLGYALLTGHAALSPAAAAAAAAAEP------------------------AATATAAALSPATSATAATAATAALPVGAARA--------ARLRQLRAS--LRRALSPPIAACLAGLVVGSAPPLRAALLPAAAPSAPSLQSWLPLFRCLEALGKAYSPAALLVLAGSLAAPTEQRRAGEGELGASASHVVAIAVARFCAVPLLSFALLHAALRAGLLPA-DPLRDLVLLLQSCMPSAQNSVLALQVDGSPERAARMARVLLAIYLIAALPVAGILSLLL 461

The following BLAST results are available for this feature:

BLAST of NO10G03150.1 vs.

BLAST of NO10G03150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005757099.1	3.700e-47	33.10	hypothetical protein EMIHUDRAFT_453794 [Emiliania ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G03150	NO10G03150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03150.1	NO10G03150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03150.1.cds1	NO10G03150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03150.1.cds2	NO10G03150.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03150.1.cds3	NO10G03150.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:883546..886889-
coding sequence from alignment at chr10:883546..886889-

mRNA sequence

>NO10G03150.1 ID=NO10G03150.1|Name=NO10G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2908bp
CGTTTTTTATTTTTATTTAATTTTATTTTTTTGAAAATTTTGTTTGTCTT
TGGTAGGTCCGGACCTCGCATTCAAACATTCCTCTCTTTGAACTATGCAC
ACAAGACCAAGCATCAGCTTGAGTGTCAAGGGTTTTCGCCTCTGCGTCTC
GGTTCAGCTTTCATCTCGCTATCCCTTGCCAAAGAGAAAAAGTGCATGGG
AAGGCAATTTGGACACTCATCGGAAGCTTGCATACGCAATCACCTGCGTC
TCTTGTTTTTCATCCTGTTCGAAAATTATTTGCAAAATTTAGGTCCTTCT
CACACTCAGGAGGCAGCGCGAGTCGGCCTCCATGCCCTGTGACCAAAGCA
AGCGGAGAGCCAAATTCTCCCCTTCCCGAAATAAAATTCAAGGGACTCGA
ATGCGGAATCGTCGACGTGATGTCTACTGCCTATATCCACTCCTCTTTGC
TCCCGACAGTACTGATAAAAACCACAGTGCGGTATGCCCCCCAACTTCCC
GTCAGGCCGATGAGGGATTCTGCCGGATGGGATAACCGAAGACGCGTCCA
ACGGCTTCCGCATTAGGTGTGCGTGGCTCGATGCCTTGCTCAGTCGAATC
AAGGATGCTGGATTCAACCGCTTGATGGCTTCCTGTCGAGTTCTAAGGCC
CATCGTACTTGAACTAAACCCAGTCCTGTGAAGAAGCGCGGCATTGGCGT
GGCGGCGAGAAACGGCCTTCCGCACGATCCGCCCCATGATATTCCCCCTC
GTCATCTTGTGCCACCATAAGAGGACAGTAATCGACCATGTTCACTCAAG
ATGAAGGGCATAATTGTTGGAAACATGCGCAGCAGCTCGATCATTTCTTG
GATGTCGGAAGCCTATCATCTTCTTTGATGTGGTGGACTTGCCCTCTTCG
AGTTTTTCTTATTATTCTAGGAGAGTGAGGGAAACAGCTTGTTATCTAGG
CATTCACGAATCCACGAACCCAACGGGCATACATTTATCTCGTCTTAAGG
CCAGGACCATGTCTTTTGGTGCCTTGATCGACCTTCTATGGGTTGCAGGA
TAGGGCAGGATTGACGAAACCCCTAAACCAAGAAAATGTTTTCAGGCTTC
TTGTGAGACTGGCGGCTGCACCAGTTGCCTTACATTATATGGTTTGAATC
CCATGGACGACGACTGGAAGCAGGAACAGCACCCTGCTATTGCTCCTATC
CATCTTCCTTGTGCTATTGCCGAAACGTGATTGATATGTGCGTTGTGGAG
TGTTTGAGGTGGAAATGAGTGCCCCAAAGCCCGAACGACGAATATCGCCA
ACTTGAAACGCGCTGCGCCTACAACAACAGACTGCTGCCGGTCTCACCAC
TCCGAGCCCCCGCTCATTGTCCTCCTCAGAACCACAGGAATTAAATTCGC
TGGGGGAGGAAAAGCTTTTTTTCGACCACAAGGTGACTCCGCAAATTCGT
GCCAGCAGTCCTCCGTCTTTCTACCCTCGCCTTCCACACACGCGAAGCTA
GGCCATGGTCTCAGCATCAGCTTCGATGATCACTCCACAGCAATCCTTTG
ACCCCCTGGTCGCCGCCTCGGGCGCAGTCCTGAATTTGGTCGCCTGCTGC
AGCGTAGGTGTCACGGCCAGTAAAGCCCGGGTGCTGGATCAACAAGCCAT
CTCCGCCCTCTCCCGCCTGGTTTACAATGTGTTCCAGCCCTCCTTGCTTT
TCACCAACGTCCTCCAAACTCTCGCCACTCCCAATCAATCCCACGGTATC
TTGCTCTTGCTCCCCTTGGCGGCAGCGCTGCAGATCCTGGCTGCTGGGGC
CCTTTCCGGCGTACTTCTGCGCCTGGTGGGACTTGACCCAAGGAGCGAGA
CAGGGCGAGAGGCACGTATTTGTTCTACTTTTGCGAATGCTGGGCCCTTG
CCGTTGTTGTTTGTCGATGCTTTGTTTAAAAATCATCCTGACCCTACTTT
ACGACCGCGGGCTGTGGCGTTCATTTCATTTTATCTCTTGGCGTGGTCGC
CATTGTTTTGGAACTACGGTTATGGGATTTTGATTGGAGGGGAAGGAGTA
GGTGGGAGGAAGGGAGGAGACGTGCAACGCGCACAGGTGACAATGAATAA
AAAGGATCTGGGAGCACCTGGCGTTATTGGTGTGGATGGTCTGACGGGAA
GTGGGAATGGCGCGGGGAGGATGATGGAGGAGGGCATCGGCAGCTGGAAG
GAGGGCAGCGCAGCAACACTAGCCTATACCCAGCTACAGATACAGGAGAA
ATGTGCGCAGGACCCGGCTATGTTTGTGCTGGCAAGAATGAGGCGATTTT
GGGGCTCCCGGGCGATTAAAAAGCTACTTAACCCTCCGACGTTGGGGTGC
ACGGTGGGAGCGTTGGTCGGGGTGATCCCACCTATGCGACGACTTTTTGT
AGGAGACGGAGCGCCATTGTCCTGCATTTTTGCAGCATTGCGGACCATGA
GCTCGGCCTACGTGCCTTGCGTGCTGCTCGTCCTTTCCGGGTCTTTAGCG
CAGGGCCTTGAGGGTTTTGACCGCAGCATCCTTCGTCGAGCAGCTTTGGT
GATGTTTCAGCGTTTTTGTCTTATGCCCGCCTTCGCCCTTGCCATGGTGG
AAGCAGGAAAGCGCATTGGTCTCCTCCCATCGGGTGACCCGCTCCTGATC
TTCGTGCTCCTCTTGCAGGGCTGCATGCCTTCTGCGCAAAACTCCGTCTT
GATTCTACAATTGGAGAGGCGACCCCATGCGGCGACATCCATGGCGCGGC
TCATTTCTACCGTCTACGTCTTGTCCATCCTTCCCATTGGCTTGCTGATT
CGGGCCTTACTTTCCTTCTGTCCCCTTGGGTTCGAGAATAGATAGCACTT
TGAAGACTTAAAAATAAGGAGGGTGGGATAAATTTTTACATATACGCCTC
ATCGCTAT

protein sequence of NO10G03150.1

>NO10G03150.1-protein ID=NO10G03150.1-protein|Name=NO10G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MVSASASMITPQQSFDPLVAASGAVLNLVACCSVGVTASKARVLDQQAIS
ALSRLVYNVFQPSLLFTNVLQTLATPNQSHGILLLLPLAAALQILAAGAL
SGVLLRLVGLDPRSETGREARICSTFANAGPLPLLFVDALFKNHPDPTLR
PRAVAFISFYLLAWSPLFWNYGYGILIGGEGVGGRKGGDVQRAQVTMNKK
DLGAPGVIGVDGLTGSGNGAGRMMEEGIGSWKEGSAATLAYTQLQIQEKC
AQDPAMFVLARMRRFWGSRAIKKLLNPPTLGCTVGALVGVIPPMRRLFVG
DGAPLSCIFAALRTMSSAYVPCVLLVLSGSLAQGLEGFDRSILRRAALVM
FQRFCLMPAFALAMVEAGKRIGLLPSGDPLLIFVLLLQGCMPSAQNSVLI
LQLERRPHAATSMARLISTVYVLSILPIGLLIRALLSFCPLGFENR*

mRNA from alignment at chr10:883546..886889-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G03150.1 ID=NO10G03150.1|Name=NO10G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3344bp|location=Sequence derived from alignment at chr10:883546..886889- (Nannochloropsis oceanica)
CGTTTTTTATTTTTATTTAATTTTATTTTTTTGAAAATTTTGTTTGTCTT
TGGTAGGTCCGGACCTCGCATTCAAACATTCCTCTCTTTGAACTATGCAC
ACAAGACCAAGCATCAGCTTGAGTGTCAAGGGTTTTCGCCTCTGCGTCTC
GGTTCAGCTTTCATCTCGCTATCCCTTGCCAAAGAGAAAAAGTGCATGGG
AAGGCAATTTGGACACTCATCGGAAGCTTGCATACGCAATCACCTGCGTC
TCTTGTTTTTCATCCTGTTCGAAAATTATTTGCAAAATTTAGGTCCTTCT
CACACTCAGGAGGCAGCGCGAGTCGGCCTCCATGCCCTGTGACCAAAGCA
AGCGGAGAGCCAAATTCTCCCCTTCCCGAAATAAAATTCAAGGGACTCGA
ATGCGGAATCGTCGACGTGATGTCTACTGCCTATATCCACTCCTCTTTGC
TCCCGACAGTACTGATAAAAACCACAGTGCGGTATGCCCCCCAACTTCCC
GTCAGGCCGATGAGGGATTCTGCCGGATGGGATAACCGAAGACGCGTCCA
ACGGCTTCCGCATTAGGTGTGCGTGGCTCGATGCCTTGCTCAGTCGAATC
AAGGATGCTGGATTCAACCGCTTGATGGCTTCCTGTCGAGTTCTAAGGCC
CATCGTACTTGAACTAAACCCAGTCCTGTGAAGAAGCGCGGCATTGGCGT
GGCGGCGAGAAACGGCCTTCCGCACGATCCGCCCCATGATATTCCCCCTC
GTCATCTTGTGCCACCATAAGAGGACAGTAATCGACCATGTTCACTCAAG
ATGAAGGGCATAATTGTTGGAAACATGCGCAGCAGCTCGATCATTTCTTG
GATGTCGGAAGCCTATCATCTTCTTTGATGTGGTGGACTTGCCCTCTTCG
AGTTTTTCTTATTATTCTAGGAGAGTGAGGGAAACAGCTTGTTATCTAGG
CATTCACGAATCCACGAACCCAACGGGCATACATTTATCTCGTCTTAAGG
CCAGGACCATGTCTTTTGGTGCCTTGATCGACCTTCTATGGGTTGCAGGA
TAGGGCAGGATTGACGAAACCCCTAAACCAAGAAAATGTTTTCAGGCTTC
TTGTGAGACTGGCGGCTGCACCAGTTGCCTTACATTATATGGTTTGAATC
CCATGGACGACGACTGGAAGCAGGAACAGCACCCTGCTATTGCTCCTATC
CATCTTCCTTGTGCTATTGCCGAAACGTGATTGATATGTGCGTTGTGGAG
TGTTTGAGGTGGAAATGAGTGCCCCAAAGCCCGAACGACGAATATCGCCA
ACTTGAAACGCGCTGCGCCTACAACAACAGACTGCTGCCGGTCTCACCAC
TCCGAGCCCCCGCTCATTGTCCTCCTCAGAACCACAGGAATTAAATTCGC
TGGGGGAGGAAAAGCTTTTTTTCGACCACAAGGTGACTCCGCAAATTCGT
GCCAGCAGTCCTCCGTCTTTCTACCCTCGCCTTCCACACACGCGAAGCTA
GGCCATGGTCTCAGCATCAGCTTCGATGATCACTCCACAGCAATCCTTTG
ACCCCCTGGTCGCCGCCTCGGGCGCAGTCCTGAATTTGGTCGCCTGCTGC
AGCGTAGGTGTCACGGCCAGTAAAGCCCGGGTGCTGGATCAACAAGCCAT
CTCCGCCCTCTCCCGCCTGGTTTACAATGTGTTCCAGCCCTCCTTGCTTT
TCACCAACGTCCTCCAAACTCTCGCCACTCCCAATCAATCCCACGGTATC
TTGCTCTTGCTCCCCTTGGCGGCAGCGCTGCAGATCCTGGCTGCTGGGGC
CCTTTCCGGCGTACTTCTGCGCCTGGTGGGACTTGACCCAAGGAGCGAGA
CAGGGCGAGAGGCACGTATTTGTTCTACTTTTGCGAATGCTGGGCCCTTG
CCGTTGTTGTTTGTCGATGCTTTGTTTAAAAATCATCCTGACCCTACTTT
ACGACCGCGGGCTGTGGCGTTCATTTCATTTTATCTCTTGGCGTGGTCGC
CATTGTTTTGGAACTACGGTTATGGGATTTTGATTGGAGGGGAAGGAGTA
GGTGGGAGGAAGGGAGGAGACGTGCAACGCGCACAGGTGACAATGAATAA
AAAGGATCTGGGAGCACCTGGCGTTATTGGTGTGGATGGTCTGACGGGAA
GTGGGAATGGCGCGGGGAGGATGATGGAGGAGGGCATCGGCAGCTGGAAG
GAGGGCAGCGCAGCAACACTAGCCTATACCCAGCTACAGATACAGGAGAA
ATGTGCGCAGGACCCGGCTATGTTTGTGCTGGCAAGAATGAGGCGATTTT
GGGGCTCCCGGGCGATTAAAAAGCTACTTAACCCTCCGACGTTGGGGTGC
ACGGTGGGAGCGTTGGTCGGGGTGATCCCACCTATGCGACGGTGAGCCAG
TGGGGGGGGGACGGAATGGAGGGAGGAGAGGAAGTGAAGGGGATGGGCGT
GTCATGGAAATTAATCCTGTGGGAGTCTCCATTCGAAACATGGCTTTGTC
GAAATCCCTTTCTGTGTATGTGTCGGTCTGAGAATGGCCATCACTCTTGA
CGAATGTATCAGGGGAAAAAACGACTACCCCACGACCCAAATCTAATTTT
CTCCGACCCCCTCCTCACATATACATCTCGGAAAAATGAACAGACTTTTT
GTAGGAGACGGAGCGCCATTGTCCTGCATTTTTGCAGCATTGCGGACCAT
GAGCTCGGCCTACGTGCCTTGCGTGCTGCTCGTCCTTTCCGGGTCTTTAG
CGCAGGTAAGAAATTAGAAAATTTTGGGACTGATTTGAAAAAGGACCATT
TCAGTCAGAACTTTTCGTGTCTGAGGCCTGTTCATTGCCTTATTATCTCA
AGGTGTGGGGATGGTGCACCCGAGCTCATATTTTTACCTCCCCTCCCTCA
TTCCTCCCTTTTTTCTCCTTTCCCTGGCTGATCCCAAAGGGCCTTGAGGG
TTTTGACCGCAGCATCCTTCGTCGAGCAGCTTTGGTGATGTTTCAGCGTT
TTTGTCTTATGCCCGCCTTCGCCCTTGCCATGGTGGAAGCAGGAAAGCGC
ATTGGTCTCCTCCCATCGGGTGACCCGCTCCTGATCTTCGTGCTCCTCTT
GCAGGGCTGCATGCCTTCTGCGCAAAACTCCGTCTTGATTCTACAATTGG
AGAGGCGACCCCATGCGGCGACATCCATGGCGCGGCTCATTTCTACCGTC
TACGTCTTGTCCATCCTTCCCATTGGCTTGCTGATTCGGGCCTTACTTTC
CTTCTGTCCCCTTGGGTTCGAGAATAGATAGCACTTTGAAGACTTAAAAA
TAAGGAGGGTGGGATAAATTTTTACATATACGCCTCATCGCTAT

Coding sequence (CDS) from alignment at chr10:883546..886889-

>NO10G03150.1 ID=NO10G03150.1|Name=NO10G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr10:883546..886889- (Nannochloropsis oceanica)
ATGGTCTCAGCATCAGCTTCGATGATCACTCCACAGCAATCCTTTGACCC
CCTGGTCGCCGCCTCGGGCGCAGTCCTGAATTTGGTCGCCTGCTGCAGCG
TAGGTGTCACGGCCAGTAAAGCCCGGGTGCTGGATCAACAAGCCATCTCC
GCCCTCTCCCGCCTGGTTTACAATGTGTTCCAGCCCTCCTTGCTTTTCAC
CAACGTCCTCCAAACTCTCGCCACTCCCAATCAATCCCACGGTATCTTGC
TCTTGCTCCCCTTGGCGGCAGCGCTGCAGATCCTGGCTGCTGGGGCCCTT
TCCGGCGTACTTCTGCGCCTGGTGGGACTTGACCCAAGGAGCGAGACAGG
GCGAGAGGCACGTATTTGTTCTACTTTTGCGAATGCTGGGCCCTTGCCGT
TGTTGTTTGTCGATGCTTTGTTTAAAAATCATCCTGACCCTACTTTACGA
CCGCGGGCTGTGGCGTTCATTTCATTTTATCTCTTGGCGTGGTCGCCATT
GTTTTGGAACTACGGTTATGGGATTTTGATTGGAGGGGAAGGAGTAGGTG
GGAGGAAGGGAGGAGACGTGCAACGCGCACAGGTGACAATGAATAAAAAG
GATCTGGGAGCACCTGGCGTTATTGGTGTGGATGGTCTGACGGGAAGTGG
GAATGGCGCGGGGAGGATGATGGAGGAGGGCATCGGCAGCTGGAAGGAGG
GCAGCGCAGCAACACTAGCCTATACCCAGCTACAGATACAGGAGAAATGT
GCGCAGGACCCGGCTATGTTTGTGCTGGCAAGAATGAGGCGATTTTGGGG
CTCCCGGGCGATTAAAAAGCTACTTAACCCTCCGACGTTGGGGTGCACGG
TGGGAGCGTTGGTCGGGGTGATCCCACCTATGCGACGACTTTTTGTAGGA
GACGGAGCGCCATTGTCCTGCATTTTTGCAGCATTGCGGACCATGAGCTC
GGCCTACGTGCCTTGCGTGCTGCTCGTCCTTTCCGGGTCTTTAGCGCAGG
GCCTTGAGGGTTTTGACCGCAGCATCCTTCGTCGAGCAGCTTTGGTGATG
TTTCAGCGTTTTTGTCTTATGCCCGCCTTCGCCCTTGCCATGGTGGAAGC
AGGAAAGCGCATTGGTCTCCTCCCATCGGGTGACCCGCTCCTGATCTTCG
TGCTCCTCTTGCAGGGCTGCATGCCTTCTGCGCAAAACTCCGTCTTGATT
CTACAATTGGAGAGGCGACCCCATGCGGCGACATCCATGGCGCGGCTCAT
TTCTACCGTCTACGTCTTGTCCATCCTTCCCATTGGCTTGCTGATTCGGG
CCTTACTTTCCTTCTGTCCCCTTGGGTTCGAGAATAGATAG

Synonyms

Publications