NO10G02490.1, NO10G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02490.1
Unique NameNO10G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr10:670896..672154 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:670896..672154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02490.1 vs.
Match: EWM25412.1 (protein arginine N-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 593.2 bits (1528), Expect = 5.700e-166
Identity = 297/352 (84.38%), Postives = 316/352 (89.77%), Query Frame = 0 
Query:   30 NGQAAAEGTATAARDAAAGTGK----NMTSADYYFDSYSHFGIHEEMLKDEVRTRSYMNAIMRNKHLFEGKVVLDVGCGTGILSMFAAKAGAAKVIGVDCSTILEQAKQIVATNGFADRITLIRGKVEEIELPVESVDIIISEWMGYFLLYESMLDTVLYARDKWLVPGGLILPDKATLCICAIEDEEYKHEKIDFWDDVYGFDMSAIKSLAILEPLVDVVEAKSVVTNQAPILELDLLTCTKEDLSFSAAFTLPARRNDYVHALVAYFDCAFTQLHKPLTFSTGPFAKYTHWKQTVFYLSDTLTVCTGEEVKGTISSAPNDRNPRDLDIHIDLAFEGKHGKVTASQDFRLR 378
            NG+   + + T    + +  GK    +MTSADYYFDSYSHFGIHEEMLKDEVRTRSYMNAIMRN+HLFEGKVVLDVGCGTGILSMFAAKAGAAKVIGVDCSTILEQAKQIV  NG  DRITLIRGK+EEI+LPVE VDIIISEWMGYFLLYESMLDTVLYARDKWLV GGLILPDKATL +CAIEDEEYK EKIDFWDDVYGFDMSAIK+LAILEPLVDVVEAKSVVT+Q+ +LELDLLTC+K DL+FSA F+LPARRNDYVHALVAYFDCAFTQLHKPLTFSTGPFAKYTHWKQTVFYL +TLTVC GE V GTISSAPNDRNPRDLDIHIDL FEG+H K   SQDFRLR
Sbjct:   25 NGEVPTKESTTPPSTSHSEDGKMSAVSMTSADYYFDSYSHFGIHEEMLKDEVRTRSYMNAIMRNRHLFEGKVVLDVGCGTGILSMFAAKAGAAKVIGVDCSTILEQAKQIVVANGLEDRITLIRGKIEEIDLPVEKVDIIISEWMGYFLLYESMLDTVLYARDKWLVAGGLILPDKATLHVCAIEDEEYKQEKIDFWDDVYGFDMSAIKNLAILEPLVDVVEAKSVVTHQSVVLELDLLTCSKADLTFSANFSLPARRNDYVHALVAYFDCAFTQLHKPLTFSTGPFAKYTHWKQTVFYLQETLTVCAGEAVTGTISSAPNDRNPRDLDIHIDLNFEGRHCKAHVSQDFRLR 376
The following BLAST results are available for this feature:
BLAST of NO10G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25412.15.700e-16684.38protein arginine N-methyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02490NO10G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02490.1NO10G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02490.1.cds1NO10G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02490.1.cds2NO10G02490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02490.1 ID=NO10G02490.1|Name=NO10G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ATGCCTCAAGCGAAAGGACGTTCGCAACAGCCTCCCCCACCCCCCACCGA
GGCGGAAAACACTACGACTGCCACCGTCCCCAATACCAATGGCCAAGCTG
CTGCTGAAGGCACCGCGACCGCTGCGCGTGATGCCGCTGCCGGCACGGGC
AAGAACATGACCTCCGCCGACTACTACTTCGACTCCTACTCCCACTTTGG
GATCCACGAAGAAATGCTCAAAGATGAAGTCCGGACCCGGAGCTACATGA
ACGCCATCATGCGGAACAAACACCTCTTCGAGGGTAAGGTCGTGTTGGAC
GTGGGGTGCGGGACTGGCATTTTGTCAATGTTTGCCGCTAAGGCAGGCGC
CGCCAAGGTGATAGGGGTCGATTGCTCCACTATCCTCGAGCAGGCTAAAC
AGATCGTGGCCACTAATGGCTTCGCGGATCGCATCACGCTTATCCGAGGC
AAAGTTGAGGAGATCGAGCTGCCTGTTGAAAGCGTCGACATCATCATCTC
GGAATGGATGGGCTACTTCCTTTTGTACGAGTCCATGCTCGACACCGTCC
TCTATGCCCGCGACAAGTGGCTTGTCCCGGGGGGGTTAATCCTCCCCGAT
AAAGCAACCCTCTGCATTTGTGCCATCGAAGACGAAGAGTACAAGCATGA
AAAAATCGATTTTTGGGATGATGTTTACGGGTTTGACATGTCCGCAATAA
AGTCTCTGGCGATACTGGAGCCCCTCGTGGATGTTGTCGAGGCCAAGAGT
GTGGTCACTAATCAGGCACCGATTTTGGAATTGGATCTCTTGACGTGTAC
TAAGGAGGATTTGAGTTTCAGTGCTGCCTTTACCTTGCCGGCACGGAGAA
ATGACTACGTGCATGCGTTGGTGGCGTATTTTGATTGTGCCTTCACTCAG
TTGCATAAGCCGTTGACATTCTCGACTGGGCCGTTTGCCAAGTACACGCA
TTGGAAGCAGACTGTGTTTTATTTGAGTGACACCTTGACGGTGTGTACGG
GGGAGGAAGTGAAGGGGACGATTAGCTCAGCGCCGAATGATCGAAATCCG
CGCGATCTGGATATTCATATCGATTTGGCTTTCGAGGGGAAGCACGGCAA
GGTGACGGCGAGTCAGGATTTCAGGTTGCGGTAG
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protein sequence of NO10G02490.1

>NO10G02490.1-protein ID=NO10G02490.1-protein|Name=NO10G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MPQAKGRSQQPPPPPTEAENTTTATVPNTNGQAAAEGTATAARDAAAGTG
KNMTSADYYFDSYSHFGIHEEMLKDEVRTRSYMNAIMRNKHLFEGKVVLD
VGCGTGILSMFAAKAGAAKVIGVDCSTILEQAKQIVATNGFADRITLIRG
KVEEIELPVESVDIIISEWMGYFLLYESMLDTVLYARDKWLVPGGLILPD
KATLCICAIEDEEYKHEKIDFWDDVYGFDMSAIKSLAILEPLVDVVEAKS
VVTNQAPILELDLLTCTKEDLSFSAAFTLPARRNDYVHALVAYFDCAFTQ
LHKPLTFSTGPFAKYTHWKQTVFYLSDTLTVCTGEEVKGTISSAPNDRNP
RDLDIHIDLAFEGKHGKVTASQDFRLR*
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mRNA from alignment at chr10:670896..672154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02490.1 ID=NO10G02490.1|Name=NO10G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp|location=Sequence derived from alignment at chr10:670896..672154- (Nannochloropsis oceanica)
ATGCCTCAAGCGAAAGGACGTTCGCAACAGCCTCCCCCACCCCCCACCGA
GGCGGAAAACACTACGACTGCCACCGTCCCCAATACCAATGGCCAAGCTG
CTGCTGAAGGCACCGCGACCGCTGCGCGTGATGCCGCTGCCGGCACGGGC
AAGAAGTATGTAGCTATTCCCAACTCCTACCTCCTCTCTGACCGGGTTTC
CGTCTAAGCATCGTGCTTTCTTTCTCGATTTACCCCATTCATGTAACTCA
CCCCTCCACCCTATCATCACAAACAAATAGCATGACCTCCGCCGACTACT
ACTTCGACTCCTACTCCCACTTTGGGATCCACGAAGAAATGCTCAAAGAT
GAAGTCCGGACCCGGAGCTACATGAACGCCATCATGCGGAACAAACACCT
CTTCGAGGGTAAGGTCGTGTTGGACGTGGGGTGCGGGACTGGCATTTTGT
CAATGTTTGCCGCTAAGGCAGGCGCCGCCAAGGTGATAGGGGTCGATTGC
TCCACTATCCTCGAGCAGGCTAAACAGATCGTGGCCACTAATGGCTTCGC
GGATCGCATCACGCTTATCCGAGGCAAAGTTGAGGAGATCGAGCTGCCTG
TTGAAAGCGTCGACATCATCATCTCGGAATGGATGGGCTACTTCCTTTTG
TACGAGTCCATGCTCGACACCGTCCTCTATGCCCGCGACAAGTGGCTTGT
CCCGGGGGGGTTAATCCTCCCCGATAAAGCAACCCTCTGCATTTGTGCCA
TCGAAGACGAAGAGTACAAGCATGAAAAAATCGATTTTTGGGATGATGTT
TACGGGTTTGACATGTCCGCAATAAAGTCTCTGGCGATACTGGAGCCCCT
CGTGGATGTTGTCGAGGCCAAGAGTGTGGTCACTAATCAGGCACCGATTT
TGGAATTGGATCTCTTGACGTGTACTAAGGAGGATTTGAGTTTCAGTGCT
GCCTTTACCTTGCCGGCACGGAGAAATGACTACGTGCATGCGTTGGTGGC
GTATTTTGATTGTGCCTTCACTCAGTTGCATAAGCCGTTGACATTCTCGA
CTGGGCCGTTTGCCAAGTACACGCATTGGAAGCAGACTGTGTTTTATTTG
AGTGACACCTTGACGGTGTGTACGGGGGAGGAAGTGAAGGGGACGATTAG
CTCAGCGCCGAATGATCGAAATCCGCGCGATCTGGATATTCATATCGATT
TGGCTTTCGAGGGGAAGCACGGCAAGGTGACGGCGAGTCAGGATTTCAGG
TTGCGGTAG
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Coding sequence (CDS) from alignment at chr10:670896..672154-

>NO10G02490.1 ID=NO10G02490.1|Name=NO10G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr10:670896..672154- (Nannochloropsis oceanica)
ATGCCTCAAGCGAAAGGACGTTCGCAACAGCCTCCCCCACCCCCCACCGA
GGCGGAAAACACTACGACTGCCACCGTCCCCAATACCAATGGCCAAGCTG
CTGCTGAAGGCACCGCGACCGCTGCGCGTGATGCCGCTGCCGGCACGGGC
AAGAACATGACCTCCGCCGACTACTACTTCGACTCCTACTCCCACTTTGG
GATCCACGAAGAAATGCTCAAAGATGAAGTCCGGACCCGGAGCTACATGA
ACGCCATCATGCGGAACAAACACCTCTTCGAGGGTAAGGTCGTGTTGGAC
GTGGGGTGCGGGACTGGCATTTTGTCAATGTTTGCCGCTAAGGCAGGCGC
CGCCAAGGTGATAGGGGTCGATTGCTCCACTATCCTCGAGCAGGCTAAAC
AGATCGTGGCCACTAATGGCTTCGCGGATCGCATCACGCTTATCCGAGGC
AAAGTTGAGGAGATCGAGCTGCCTGTTGAAAGCGTCGACATCATCATCTC
GGAATGGATGGGCTACTTCCTTTTGTACGAGTCCATGCTCGACACCGTCC
TCTATGCCCGCGACAAGTGGCTTGTCCCGGGGGGGTTAATCCTCCCCGAT
AAAGCAACCCTCTGCATTTGTGCCATCGAAGACGAAGAGTACAAGCATGA
AAAAATCGATTTTTGGGATGATGTTTACGGGTTTGACATGTCCGCAATAA
AGTCTCTGGCGATACTGGAGCCCCTCGTGGATGTTGTCGAGGCCAAGAGT
GTGGTCACTAATCAGGCACCGATTTTGGAATTGGATCTCTTGACGTGTAC
TAAGGAGGATTTGAGTTTCAGTGCTGCCTTTACCTTGCCGGCACGGAGAA
ATGACTACGTGCATGCGTTGGTGGCGTATTTTGATTGTGCCTTCACTCAG
TTGCATAAGCCGTTGACATTCTCGACTGGGCCGTTTGCCAAGTACACGCA
TTGGAAGCAGACTGTGTTTTATTTGAGTGACACCTTGACGGTGTGTACGG
GGGAGGAAGTGAAGGGGACGATTAGCTCAGCGCCGAATGATCGAAATCCG
CGCGATCTGGATATTCATATCGATTTGGCTTTCGAGGGGAAGCACGGCAA
GGTGACGGCGAGTCAGGATTTCAGGTTGCGGTAG
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Synonyms
Publications