NO10G02430.1, NO10G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02430.1
Unique NameNO10G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1601
Alignment locationchr10:662252..663852 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:662252..663852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02430.1 vs.
Match: EWM25361.1 (l-ascorbate peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 578.6 bits (1490), Expect = 1.500e-161
Identity = 284/344 (82.56%), Postives = 304/344 (88.37%), Query Frame = 0 
Query:   44 MARLLFVTSSALLLQAAMAFVPTSKLAPMPQRTATRSS---RTGLRMAATPAEYKACYEELLTFADKNNCAPILVRLAWHDAGTFNVANAGQPFPARGGANGSIRFEPEIKHGANAGLSDALKLLGPVKKRHPTVGWADLMQAASAAGIEATGGPRIPMKYGRKDAEGPEDCPKEGNLPGANLPGQQTGPFDDGTPTPAAHLRKVFHRMGLTDQDIVALSGAHTLGRAYKERSGLGKESTKYTDGKHIARGDGKEGHGRKGGQPWTEKFLKFDNSYFTTMYDEKADPELLKLDTDLCIFGDEGFRPFALKYKDDQAAFFADYCVSHAKLSELGAEWEVPGGVTF 385
            MARLLF TSS LLLQAA+ F+P SKLAP P RTA R+S   R+GLRMAAT  EYKACY +LL   DK NCAPI+VRLAWHDAGTFN ANA +PFP RGGANGSIRF+PE+ HGANAGL  ALKLL PVKKRHP VGWADLMQAASAAGIEATGGPRIPM+YGRKDA GPEDCPKEGNLPGAN+PGQQTGPF DGTPTPA HLRKVFHRMGL+DQDIVALSGAHTLGRAYK+RSGLGKESTK+T+G    RGDG +G+GRKGGQPWTEK+LKFDNSYF TMYD  ADPELLKLDTDLCIFGDEGFRP ++KYKDDQ AFF DYCVSHAKLSELG EWEVPGGVTF
Sbjct:    1 MARLLFATSSVLLLQAALGFMPASKLAPAP-RTAARTSVPSRSGLRMAATAEEYKACYVDLLETVDKANCAPIVVRLAWHDAGTFNKANADKPFPDRGGANGSIRFDPELAHGANAGLGLALKLLEPVKKRHPNVGWADLMQAASAAGIEATGGPRIPMRYGRKDAAGPEDCPKEGNLPGANIPGQQTGPFPDGTPTPADHLRKVFHRMGLSDQDIVALSGAHTLGRAYKDRSGLGKESTKFTEGDAAPRGDGAKGYGRKGGQPWTEKWLKFDNSYFATMYDPNADPELLKLDTDLCIFGDEGFRPHSMKYKDDQDAFFKDYCVSHAKLSELGVEWEVPGGVTF 343
The following BLAST results are available for this feature:
BLAST of NO10G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25361.11.500e-16182.56l-ascorbate peroxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02430NO10G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02430.1NO10G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02430.1.cds1NO10G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02430.1 ID=NO10G02430.1|Name=NO10G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp
CTTCCTCTCATCATCCTAGACGGAGAGCGTGAAATCTCAGGATACCAATG
CCTGGACTGGGATGTTTGACACCAAAGGACGAGGCAAAGGACATGAGGCA
AGTTCGTAGACCGCTGTTGTTGATAACTCTCGACGTCCCCCCCTTAAACT
TCGCCCCCTTTTCACCATGTTACACGCTCACAGCCGCACACAGTCACACA
CCCTCGTCCTCCTCAAGTGCAACACACGGCAACGCACACGATATGTGCTG
ACTCCGACCCCCCATCCACATCTACTCCACGAACAGATTGACGCAATGGC
GCGCCTGCTTTTTGTCACCTCCTCCGCCCTGCTCTTGCAGGCAGCTATGG
CTTTCGTGCCCACCAGCAAGCTGGCTCCCATGCCCCAGCGAACTGCCACC
CGCAGCAGCCGCACGGGCCTCCGTATGGCCGCCACACCTGCTGAGTACAA
GGCTTGCTACGAAGAGCTGCTCACATTCGCCGACAAGAACAACTGCGCGC
CCATTTTGGTGCGTCTGGCTTGGCACGACGCTGGTACTTTCAACGTTGCC
AATGCCGGTCAGCCTTTCCCTGCTCGTGGTGGTGCCAATGGTTCCATCCG
GTTCGAGCCCGAGATCAAGCACGGTGCCAACGCCGGTCTGAGCGATGCGC
TTAAGCTCTTGGGCCCCGTCAAGAAGAGGCATCCGACCGTGGGCTGGGCT
GATCTCATGCAAGCTGCATCTGCGGCCGGAATCGAGGCCACCGGTGGCCC
GCGTATCCCCATGAAGTACGGCCGCAAGGACGCCGAGGGACCCGAAGACT
GCCCCAAGGAGGGGAACTTGCCGGGCGCCAACTTGCCTGGGCAACAAACG
GGGCCTTTTGATGATGGCACCCCTACGCCGGCTGCTCACTTGCGCAAAGT
CTTTCACCGCATGGGTTTGACTGACCAGGATATTGTGGCTCTCTCGGGCG
CCCACACTTTGGGCCGCGCGTATAAGGAACGGTCCGGGCTTGGGAAGGAG
TCGACCAAGTACACGGACGGCAAGCACATCGCCCGTGGAGATGGGAAGGA
GGGGCATGGTCGTAAGGGTGGGCAGCCGTGGACTGAAAAGTTCTTGAAGT
TTGATAATTCGTACTTCACCACCATGTATGATGAGAAGGCGGACCCGGAG
TTGCTCAAGCTGGACACAGATTTGTGTATTTTTGGAGATGAAGGGTTTAG
GCCGTTTGCCTTGAAGTACAAGGATGACCAGGCGGCATTCTTTGCGGATT
ACTGCGTGAGTCACGCGAAGTTGTCAGAGTTGGGGGCAGAATGGGAGGTG
CCCGGTGGAGTGACGTTTTAAGTAATAGTGGCGGTAGAGAGGAGATTTAT
TTTGGTTTGATTGATTGAATAGGAGGGAAGGAGTCTAGGCGTATCGTAGT
GGCTTTGGTGGCGCTGCAAGGATAGGAGAGGAGGAGGAAACATCTTCTCG
TCTTTTTCTACTAATTGTTTTGTCCACTATCTGCCTGAAGGACTGACTGA
TTGACTTACACCAGGCAAAGCTTAGCACAAGAATGAATCTTTCAAGCCTC
GTGAAGATGGAAAGATAATAAAGGGAGACGAGAAAGAGATGCCATCACCC
T
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protein sequence of NO10G02430.1

>NO10G02430.1-protein ID=NO10G02430.1-protein|Name=NO10G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MLHAHSRTQSHTLVLLKCNTRQRTRYVLTPTPHPHLLHEQIDAMARLLFV
TSSALLLQAAMAFVPTSKLAPMPQRTATRSSRTGLRMAATPAEYKACYEE
LLTFADKNNCAPILVRLAWHDAGTFNVANAGQPFPARGGANGSIRFEPEI
KHGANAGLSDALKLLGPVKKRHPTVGWADLMQAASAAGIEATGGPRIPMK
YGRKDAEGPEDCPKEGNLPGANLPGQQTGPFDDGTPTPAAHLRKVFHRMG
LTDQDIVALSGAHTLGRAYKERSGLGKESTKYTDGKHIARGDGKEGHGRK
GGQPWTEKFLKFDNSYFTTMYDEKADPELLKLDTDLCIFGDEGFRPFALK
YKDDQAAFFADYCVSHAKLSELGAEWEVPGGVTF*
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mRNA from alignment at chr10:662252..663852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02430.1 ID=NO10G02430.1|Name=NO10G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at chr10:662252..663852+ (Nannochloropsis oceanica)
CTTCCTCTCATCATCCTAGACGGAGAGCGTGAAATCTCAGGATACCAATG
CCTGGACTGGGATGTTTGACACCAAAGGACGAGGCAAAGGACATGAGGCA
AGTTCGTAGACCGCTGTTGTTGATAACTCTCGACGTCCCCCCCTTAAACT
TCGCCCCCTTTTCACCATGTTACACGCTCACAGCCGCACACAGTCACACA
CCCTCGTCCTCCTCAAGTGCAACACACGGCAACGCACACGATATGTGCTG
ACTCCGACCCCCCATCCACATCTACTCCACGAACAGATTGACGCAATGGC
GCGCCTGCTTTTTGTCACCTCCTCCGCCCTGCTCTTGCAGGCAGCTATGG
CTTTCGTGCCCACCAGCAAGCTGGCTCCCATGCCCCAGCGAACTGCCACC
CGCAGCAGCCGCACGGGCCTCCGTATGGCCGCCACACCTGCTGAGTACAA
GGCTTGCTACGAAGAGCTGCTCACATTCGCCGACAAGAACAACTGCGCGC
CCATTTTGGTGCGTCTGGCTTGGCACGACGCTGGTACTTTCAACGTTGCC
AATGCCGGTCAGCCTTTCCCTGCTCGTGGTGGTGCCAATGGTTCCATCCG
GTTCGAGCCCGAGATCAAGCACGGTGCCAACGCCGGTCTGAGCGATGCGC
TTAAGCTCTTGGGCCCCGTCAAGAAGAGGCATCCGACCGTGGGCTGGGCT
GATCTCATGCAAGCTGCATCTGCGGCCGGAATCGAGGCCACCGGTGGCCC
GCGTATCCCCATGAAGTACGGCCGCAAGGACGCCGAGGGACCCGAAGACT
GCCCCAAGGAGGGGAACTTGCCGGGCGCCAACTTGCCTGGGCAACAAACG
GGGCCTTTTGATGATGGCACCCCTACGCCGGCTGCTCACTTGCGCAAAGT
CTTTCACCGCATGGGTTTGACTGACCAGGATATTGTGGCTCTCTCGGGCG
CCCACACTTTGGGCCGCGCGTATAAGGAACGGTCCGGGCTTGGGAAGGAG
TCGACCAAGTACACGGACGGCAAGCACATCGCCCGTGGAGATGGGAAGGA
GGGGCATGGTCGTAAGGGTGGGCAGCCGTGGACTGAAAAGTTCTTGAAGT
TTGATAATTCGTACTTCACCACCATGTATGATGAGAAGGCGGACCCGGAG
TTGCTCAAGCTGGACACAGATTTGTGTATTTTTGGAGATGAAGGGTTTAG
GCCGTTTGCCTTGAAGTACAAGGATGACCAGGCGGCATTCTTTGCGGATT
ACTGCGTGAGTCACGCGAAGTTGTCAGAGTTGGGGGCAGAATGGGAGGTG
CCCGGTGGAGTGACGTTTTAAGTAATAGTGGCGGTAGAGAGGAGATTTAT
TTTGGTTTGATTGATTGAATAGGAGGGAAGGAGTCTAGGCGTATCGTAGT
GGCTTTGGTGGCGCTGCAAGGATAGGAGAGGAGGAGGAAACATCTTCTCG
TCTTTTTCTACTAATTGTTTTGTCCACTATCTGCCTGAAGGACTGACTGA
TTGACTTACACCAGGCAAAGCTTAGCACAAGAATGAATCTTTCAAGCCTC
GTGAAGATGGAAAGATAATAAAGGGAGACGAGAAAGAGATGCCATCACCC
T
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Coding sequence (CDS) from alignment at chr10:662252..663852+

>NO10G02430.1 ID=NO10G02430.1|Name=NO10G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr10:662252..663852+ (Nannochloropsis oceanica)
ATGTTACACGCTCACAGCCGCACACAGTCACACACCCTCGTCCTCCTCAA
GTGCAACACACGGCAACGCACACGATATGTGCTGACTCCGACCCCCCATC
CACATCTACTCCACGAACAGATTGACGCAATGGCGCGCCTGCTTTTTGTC
ACCTCCTCCGCCCTGCTCTTGCAGGCAGCTATGGCTTTCGTGCCCACCAG
CAAGCTGGCTCCCATGCCCCAGCGAACTGCCACCCGCAGCAGCCGCACGG
GCCTCCGTATGGCCGCCACACCTGCTGAGTACAAGGCTTGCTACGAAGAG
CTGCTCACATTCGCCGACAAGAACAACTGCGCGCCCATTTTGGTGCGTCT
GGCTTGGCACGACGCTGGTACTTTCAACGTTGCCAATGCCGGTCAGCCTT
TCCCTGCTCGTGGTGGTGCCAATGGTTCCATCCGGTTCGAGCCCGAGATC
AAGCACGGTGCCAACGCCGGTCTGAGCGATGCGCTTAAGCTCTTGGGCCC
CGTCAAGAAGAGGCATCCGACCGTGGGCTGGGCTGATCTCATGCAAGCTG
CATCTGCGGCCGGAATCGAGGCCACCGGTGGCCCGCGTATCCCCATGAAG
TACGGCCGCAAGGACGCCGAGGGACCCGAAGACTGCCCCAAGGAGGGGAA
CTTGCCGGGCGCCAACTTGCCTGGGCAACAAACGGGGCCTTTTGATGATG
GCACCCCTACGCCGGCTGCTCACTTGCGCAAAGTCTTTCACCGCATGGGT
TTGACTGACCAGGATATTGTGGCTCTCTCGGGCGCCCACACTTTGGGCCG
CGCGTATAAGGAACGGTCCGGGCTTGGGAAGGAGTCGACCAAGTACACGG
ACGGCAAGCACATCGCCCGTGGAGATGGGAAGGAGGGGCATGGTCGTAAG
GGTGGGCAGCCGTGGACTGAAAAGTTCTTGAAGTTTGATAATTCGTACTT
CACCACCATGTATGATGAGAAGGCGGACCCGGAGTTGCTCAAGCTGGACA
CAGATTTGTGTATTTTTGGAGATGAAGGGTTTAGGCCGTTTGCCTTGAAG
TACAAGGATGACCAGGCGGCATTCTTTGCGGATTACTGCGTGAGTCACGC
GAAGTTGTCAGAGTTGGGGGCAGAATGGGAGGTGCCCGGTGGAGTGACGT
TTTAA
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Synonyms
Publications