NO10G01730.2, NO10G01730.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01730.2
Unique NameNO10G01730.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2129
Alignment locationchr10:482217..484494 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:482217..484494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01730.2 vs.
Match: EWM25407.1 (papain family cysteine protease containing protein [Nannochloropsis gaditana])

HSP 1 Score: 456.4 bits (1173), Expect = 7.100e-125
Identity = 220/321 (68.54%), Postives = 260/321 (81.00%), Query Frame = 0 
Query:    1 MKVLGLFVAA-AVGLLAWSDAALVRGSSKGKPYQVNSS--SRLSLDLEPQHNYTFDRYVEEFGKEYIPGSEEWEKRRNLFLKRKKSIQAHNAAHLNGKTTFRKGVNEYADWTEAELRGMLGFKPSEEWHRKHHSGSEVLLTLIEGAGNESELSGLRQQERLLTNLPTHVDWREKGAVTKPKNQGACGSCWTFSGVQAIESALWLSTGKLFTLSEQEFVSCTPNPDHCGGTGGCYGATQDILYDYVLAQGFSLEQDYPYVSGNGTEPMCLRQPLHVGSIAGYVDVTPNDLGAHMLAVNSQPLAISLDASEFHNYHSGVLTFE 319
            M   GL +AA A  ++  ++ A      +GK +  +SS  SRLSLDLEP H YTF+ +V +FGKEY+PGS E+++R  +F  R + +Q HNAA+    TTFRKGVN+Y+DWT+AELRG+LGFKPS +WH K     EVL   +E + + S      +QERLLTNLP+HVDWREKGAVTKPKNQGACGSCWTFSGV+AIESALWLSTGKLFTLSEQEFVSCT NP+HCGGTGGC+GATQDILY+YVLA GF+LE+DYPYVSGNG+EPMCL QPLHVGSIAGYVD+ PNDL AH+LAVNSQPLAISLDAS+FHNYHSGVLTF+
Sbjct:    1 MYASGLRIAAVAKVVIVLTNLAFALSGREGKAHLRHSSPASRLSLDLEPHHRYTFEEFVRDFGKEYVPGSTEYQRRETIFADRLRVVQEHNAANSRRGTTFRKGVNQYSDWTDAELRGLLGFKPSAQWHVKRQPRLEVLSAAMESSHSNSS-GAFSRQERLLTNLPSHVDWREKGAVTKPKNQGACGSCWTFSGVEAIESALWLSTGKLFTLSEQEFVSCTSNPEHCGGTGGCFGATQDILYEYVLAHGFTLERDYPYVSGNGSEPMCLNQPLHVGSIAGYVDLPPNDLAAHLLAVNSQPLAISLDASDFHNYHSGVLTFQ 320
The following BLAST results are available for this feature:
BLAST of NO10G01730.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25407.17.100e-12568.54papain family cysteine protease containing protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01730NO10G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01730.2NO10G01730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01730.2.cds1NO10G01730.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01730.2.cds2NO10G01730.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01730.2 ID=NO10G01730.2|Name=NO10G01730.2|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp
CTCTGACGCATGCAGAGGCCCTGTGCGGTGTGTGGTTTGGAACTGCGTAG
GTGTAGAAGTAAAGCGAAGGCACTGGCAGTTGTGCCAGCTTCCGAGACTC
ATGCCTGCTCGTTTTGAATGTCACAACACCACCACTACCACCACAAAGTC
TAGACGCCCTCAATTTACCCACGCAGACAGCATCAATGTAAAAGGTGATA
TTTACTGCAAGCCCCTATCTCATGCTTTTCGGTGCCATCTCGCGACCCAA
GCCTTTTCCCGCCTGCTGTGCCTTTTTGTTCCTTGACGCTGACCAACTGA
CTCGAACACAACCTACATTTACCAACAGTCACTGTCCGCTCCGATAATAT
TACAATGAAAGTCCTTGGTCTCTTCGTCGCCGCCGCGGTGGGTCTGCTGG
CCTGGTCAGACGCCGCTCTCGTCCGTGGAAGCAGCAAGGGCAAGCCTTAT
CAAGTGAACTCGAGCTCCCGCCTCTCGCTTGACCTGGAGCCCCAACACAA
TTATACCTTTGACCGCTACGTCGAAGAGTTTGGCAAAGAATACATTCCTG
GTTCGGAGGAATGGGAAAAGCGCAGGAACCTTTTCCTCAAGCGCAAGAAA
TCCATTCAGGCTCATAATGCTGCGCATCTCAATGGCAAGACGACCTTTCG
AAAGGGTGTGAACGAGTACGCCGATTGGACAGAGGCCGAGCTTCGGGGTA
TGCTGGGTTTCAAGCCCTCTGAGGAATGGCATCGCAAGCATCATTCTGGC
TCGGAGGTATTGTTAACTCTGATAGAGGGAGCGGGGAATGAGTCCGAGTT
GTCGGGGTTGCGCCAACAGGAGCGACTCTTGACCAACCTCCCCACCCATG
TGGACTGGCGCGAGAAAGGCGCGGTGACTAAGCCCAAGAACCAGGGGGCG
TGTGGGTCCTGCTGGACCTTTTCGGGGGTCCAGGCCATCGAAAGTGCTCT
CTGGCTAAGCACCGGCAAGCTCTTCACATTGTCCGAGCAAGAATTTGTTT
CCTGTACTCCCAACCCTGACCACTGCGGGGGCACCGGCGGGTGCTATGGT
GCCACGCAAGATATTCTGTATGACTACGTGCTGGCCCAAGGGTTCTCTCT
GGAGCAAGATTATCCTTACGTAAGCGGGAATGGCACCGAGCCGATGTGCT
TGAGGCAGCCTTTGCACGTCGGCAGCATTGCGGGATACGTGGACGTGACA
CCTAATGATTTGGGGGCACATATGCTGGCAGTGAATAGCCAGCCATTGGC
CATTTCTCTGGATGCATCAGAGTTTCATAACTACCACTCGGGAGTGTTGA
CGTTTGAGGTAGAGAGGGAGTGAGGAAGGAGGGAGGGAGTGGGGGGTAAG
GGAGGGAGGGGAGGAAAAGGAGGTATGTGGGAACATCAAGACAAGCACAC
TTCATGGTAACTTCGACACACTTCATGTACCTTCTACATTCGGACATGAC
ATTTTTGTAGCGATAGACATGTCTCAGCACTCGACAAGGTCGCTTATCCC
TCTGTCTCCTTCCCTTCTTTCCTCCCTCCTCGACTCCAAAACAGGACTGC
GGCGCTGACCTGAACCACGCCGTCCAGCTGGTAGGCTACGGCACAGACGA
CGAGACTGGACTCGATTATTTTCTCGTGCGCAACAGCTGGGGAAGGGCAT
GGGGAGAGGACGGGTACATCCGGTTGGCACGCTCGGACAGATGTGCGGTG
GATCAAACCCCTTTGGATGGGACGGGCTGCGAGGGTGGACCGGAGAAGCT
GACGGTATGTGGCACGTGTGGCATGCTGTTTAGCTCGTCTTACCCTGTTG
GGGCCTTCTTGTTTGAAGATTAATATGTGGGTGGGGGAGAAGGGGAGGAG
ACGTGGGAGGCGGCAGCAGCAGCAACAGTACAGCAGCAACAGACGCAGCC
GCTGCGTCGCTCAAGTGTGTCGATACCAGAGAAATATCATTACATGAGCC
TCTTACATACCACAAGTGTAGAAAAAAAGGGAGAGACTGAGGAGGTGGTG
AAAGTGCCGATCTAGGAGGGGGGAAAGATAGCGAACTCAAAGGGGTGTGT
GTATTGAAGGTTGAGGTAGCTTAAGTTGGAGAGAGGAAAGAATAATAAAG
AGTGGAAGAAGGGACTGTAAAAAAATAAA
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protein sequence of NO10G01730.2

>NO10G01730.2-protein ID=NO10G01730.2-protein|Name=NO10G01730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MKVLGLFVAAAVGLLAWSDAALVRGSSKGKPYQVNSSSRLSLDLEPQHNY
TFDRYVEEFGKEYIPGSEEWEKRRNLFLKRKKSIQAHNAAHLNGKTTFRK
GVNEYADWTEAELRGMLGFKPSEEWHRKHHSGSEVLLTLIEGAGNESELS
GLRQQERLLTNLPTHVDWREKGAVTKPKNQGACGSCWTFSGVQAIESALW
LSTGKLFTLSEQEFVSCTPNPDHCGGTGGCYGATQDILYDYVLAQGFSLE
QDYPYVSGNGTEPMCLRQPLHVGSIAGYVDVTPNDLGAHMLAVNSQPLAI
SLDASEFHNYHSGVLTFEVERE*
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mRNA from alignment at chr10:482217..484494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01730.2 ID=NO10G01730.2|Name=NO10G01730.2|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp|location=Sequence derived from alignment at chr10:482217..484494+ (Nannochloropsis oceanica)
CTCTGACGCATGCAGAGGCCCTGTGCGGTGTGTGGTTTGGAACTGCGTAG
GTGTAGAAGTAAAGCGAAGGCACTGGCAGTTGTGCCAGCTTCCGAGACTC
ATGCCTGCTCGTTTTGAATGTCACAACACCACCACTACCACCACAAAGTC
TAGACGCCCTCAATTTACCCACGCAGACAGCATCAATGTAAAAGGTGATA
TTTACTGCAAGCCCCTATCTCATGCTTTTCGGTGCCATCTCGCGACCCAA
GCCTTTTCCCGCCTGCTGTGCCTTTTTGTTCCTTGACGCTGACCAACTGA
CTCGAACACAACCTACATTTACCAACAGTCACTGTCCGCTCCGATAATAT
TACAATGAAAGTCCTTGGTCTCTTCGTCGCCGCCGCGGTGGGTCTGCTGG
CCTGGTCAGACGCCGCTCTCGTCCGTGGAAGCAGCAAGGGCAAGCCTTAT
CAAGTGAACTCGAGCTCCCGCCTCTCGCTTGACCTGGAGCCCCAACACAA
TTATACCTTTGACCGCTACGTCGAAGAGTTTGGCAAAGAATACATTCCTG
GTTCGGAGGAATGGGAAAAGCGCAGGAACCTTTTCCTCAAGCGCAAGAAA
TCCATTCAGGCTCATAATGCTGCGCATCTCAATGGCAAGACGACCTTTCG
AAAGGGTGTGAACGAGTACGCCGATTGGACAGAGGCCGAGCTTCGGGGTA
TGCTGGGTTTCAAGCCCTCTGAGGAATGGCATCGCAAGCATCATTCTGGC
TCGGAGGTATTGTTAACTCTGATAGAGGGAGCGGGGAATGAGTCCGAGTT
GTCGGGGTTGCGCCAACAGGAGCGACTCTTGACCAACCTCCCCACCCATG
TGGACTGGCGCGAGAAAGGCGCGGTGACTAAGCCCAAGAACCAGGGGGCG
TGTGGGTCGTAAGTATAGTCGGGGGGGGGAAGAGGGTCGGGGGGCCGTGT
CTTGATGCTTCATGGACGCCGTGTGCCCCCCTTACTTGAAAAGTGTTTTT
TGTAAGAGCGACTCATCTGTCTCTGTCTTCCTTCCTCTTTCCCTCTTTCC
GCTACAGCTGCTGGACCTTTTCGGGGGTCCAGGCCATCGAAAGTGCTCTC
TGGCTAAGCACCGGCAAGCTCTTCACATTGTCCGAGCAAGAATTTGTTTC
CTGTACTCCCAACCCTGACCACTGCGGGGGCACCGGCGGGTGCTATGGTG
CCACGCAAGATATTCTGTATGACTACGTGCTGGCCCAAGGGTTCTCTCTG
GAGCAAGATTATCCTTACGTAAGCGGGAATGGCACCGAGCCGATGTGCTT
GAGGCAGCCTTTGCACGTCGGCAGCATTGCGGGATACGTGGACGTGACAC
CTAATGATTTGGGGGCACATATGCTGGCAGTGAATAGCCAGCCATTGGCC
ATTTCTCTGGATGCATCAGAGTTTCATAACTACCACTCGGGAGTGTTGAC
GTTTGAGGTAGAGAGGGAGTGAGGAAGGAGGGAGGGAGTGGGGGGTAAGG
GAGGGAGGGGAGGAAAAGGAGGTATGTGGGAACATCAAGACAAGCACACT
TCATGGTAACTTCGACACACTTCATGTACCTTCTACATTCGGACATGACA
TTTTTGTAGCGATAGACATGTCTCAGCACTCGACAAGGTCGCTTATCCCT
CTGTCTCCTTCCCTTCTTTCCTCCCTCCTCGACTCCAAAACAGGACTGCG
GCGCTGACCTGAACCACGCCGTCCAGCTGGTAGGCTACGGCACAGACGAC
GAGACTGGACTCGATTATTTTCTCGTGCGCAACAGCTGGGGAAGGGCATG
GGGAGAGGACGGGTACATCCGGTTGGCACGCTCGGACAGATGTGCGGTGG
ATCAAACCCCTTTGGATGGGACGGGCTGCGAGGGTGGACCGGAGAAGCTG
ACGGTATGTGGCACGTGTGGCATGCTGTTTAGCTCGTCTTACCCTGTTGG
GGCCTTCTTGTTTGAAGATTAATATGTGGGTGGGGGAGAAGGGGAGGAGA
CGTGGGAGGCGGCAGCAGCAGCAACAGTACAGCAGCAACAGACGCAGCCG
CTGCGTCGCTCAAGTGTGTCGATACCAGAGAAATATCATTACATGAGCCT
CTTACATACCACAAGTGTAGAAAAAAAGGGAGAGACTGAGGAGGTGGTGA
AAGTGCCGATCTAGGAGGGGGGAAAGATAGCGAACTCAAAGGGGTGTGTG
TATTGAAGGTTGAGGTAGCTTAAGTTGGAGAGAGGAAAGAATAATAAAGA
GTGGAAGAAGGGACTGTAAAAAAATAAA
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Coding sequence (CDS) from alignment at chr10:482217..484494+

>NO10G01730.2 ID=NO10G01730.2|Name=NO10G01730.2|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr10:482217..484494+ (Nannochloropsis oceanica)
ATGAAAGTCCTTGGTCTCTTCGTCGCCGCCGCGGTGGGTCTGCTGGCCTG
GTCAGACGCCGCTCTCGTCCGTGGAAGCAGCAAGGGCAAGCCTTATCAAG
TGAACTCGAGCTCCCGCCTCTCGCTTGACCTGGAGCCCCAACACAATTAT
ACCTTTGACCGCTACGTCGAAGAGTTTGGCAAAGAATACATTCCTGGTTC
GGAGGAATGGGAAAAGCGCAGGAACCTTTTCCTCAAGCGCAAGAAATCCA
TTCAGGCTCATAATGCTGCGCATCTCAATGGCAAGACGACCTTTCGAAAG
GGTGTGAACGAGTACGCCGATTGGACAGAGGCCGAGCTTCGGGGTATGCT
GGGTTTCAAGCCCTCTGAGGAATGGCATCGCAAGCATCATTCTGGCTCGG
AGGTATTGTTAACTCTGATAGAGGGAGCGGGGAATGAGTCCGAGTTGTCG
GGGTTGCGCCAACAGGAGCGACTCTTGACCAACCTCCCCACCCATGTGGA
CTGGCGCGAGAAAGGCGCGGTGACTAAGCCCAAGAACCAGGGGGCGTGTG
GGTCCTGCTGGACCTTTTCGGGGGTCCAGGCCATCGAAAGTGCTCTCTGG
CTAAGCACCGGCAAGCTCTTCACATTGTCCGAGCAAGAATTTGTTTCCTG
TACTCCCAACCCTGACCACTGCGGGGGCACCGGCGGGTGCTATGGTGCCA
CGCAAGATATTCTGTATGACTACGTGCTGGCCCAAGGGTTCTCTCTGGAG
CAAGATTATCCTTACGTAAGCGGGAATGGCACCGAGCCGATGTGCTTGAG
GCAGCCTTTGCACGTCGGCAGCATTGCGGGATACGTGGACGTGACACCTA
ATGATTTGGGGGCACATATGCTGGCAGTGAATAGCCAGCCATTGGCCATT
TCTCTGGATGCATCAGAGTTTCATAACTACCACTCGGGAGTGTTGACGTT
TGAGGTAGAGAGGGAGTGA
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Synonyms
Publications