NO10G01700.1, NO10G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01700.1
Unique NameNO10G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr10:477318..478850 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:477318..478850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01700.1 vs.
Match: EWM25447.1 (isoform a [Nannochloropsis gaditana])

HSP 1 Score: 540.8 bits (1392), Expect = 4.500e-150
Identity = 306/522 (58.62%), Postives = 363/522 (69.54%), Query Frame = 0 
Query:    1 MNAPFFTLTGGSPSSSTDCNCDDDTA---RQP-RVYAARYHQLALLCALILTNAVVWVAFSAITPATASTFGVSSAWINVIALSFQICFLPGTVIGYCLMERWGLRATLLMGGVLTTMGAVLRLTSLYVLPKS---------DGGGGGGGYVLLLFGTCLAALAQPLLLNVPPALAGKWFEVKQRDVVTSLAFMCSPLGNAVGVTVAPAFVG--GGD-----EGSGGASARDGLRLFLLAQLVVVAATTVWAWLGVKDSPPTPPSHTAALHVQQQQDKQYAREL--HHQPSIP-TWQALKTDLHRCLVLNSSFRLLFVCFGLGLGFFNALLTLVGQLLSPCGYSDSESGALGGIFIGTGLLGAFLAGLILDATHHYSLCLKVGFMGAWVASFLFISALRPNNLAFLATSFALLGLWMLPLLPVAIENGVEIMFPEVPEFFSSGLLLSAGNLAGLPLASLFSLAINRYEEREGSCRVFWKPPAVFVLCVTTLCAFPILMYRPARFGRWEAEKQQRQQRQQQCG 500
            M APF  L   S  SS D N         R P R++ +RY QL LLC LIL NAVVWVAFSAITPATA+ +GVS   +N++ALSFQ+ FLPGT+ GY L ERWGLR TLL G  +T + A +R  SLYV P S         D   GG  Y LLL GT LAALAQPLLLN PP LA  WF VK+RD+VTSLAFMCSPLG+A+GVT+AP FV   G D      G+    AR GLRLFLLAQL +  ATT+ A  G  D PPTPPS  AAL  Q+++++  + +       S+P  WQ +  DL RCL+ N SF LL  CFG+GLGFFNALLTL+GQLL+PCGY ++E+GALGGIF+GTGL+GA +AGL++DA+H Y L LK GF+GAW AS   +  LRP+N   LA  F LLG  MLPLLPVAIENGVEI +P+VPEFFSSGLLLSAGNL G+PLA LF+  I+ Y   EGSCR  WKP AV V+ VTT CA P+L YRP  FGRWEAEK+QR++  + CG
Sbjct:    1 MEAPF--LAPESSGSSQDWNVASQETVIQRHPWRIHGSRYFQLILLCILILNNAVVWVAFSAITPATAAVYGVSPGLVNIVALSFQMLFLPGTIAGYMLKERWGLRLTLLAGAFMTAVSAAIRFVSLYVPPVSFRNASTDGHDVNNGGCAYALLLLGTSLAALAQPLLLNTPPDLAVHWFAVKERDLVTSLAFMCSPLGSALGVTLAPLFVSEAGADTEEDISGNHRNDARGGLRLFLLAQLGMGVATTLLAHAGATDRPPTPPSRAAALGSQREEERVDSSDALGSRVLSMPLAWQLVVPDLRRCLLCNPSFLLLLFCFGIGLGFFNALLTLLGQLLAPCGYPEAEAGALGGIFLGTGLVGAVMAGLLMDASHRYGLLLKGGFLGAWAASLFLVFTLRPDNFLVLALCFGLLGFTMLPLLPVAIENGVEITYPDVPEFFSSGLLLSAGNLTGIPLAFLFAWTIDSY---EGSCRKLWKPAAVLVVVVTTACALPVLGYRPRAFGRWEAEKEQRREGLEGCG 517
The following BLAST results are available for this feature:
BLAST of NO10G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25447.14.500e-15058.62isoform a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01700NO10G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01700.1NO10G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01700.1.cds1NO10G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01700.1 ID=NO10G01700.1|Name=NO10G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGAACGCCCCCTTCTTTACCCTGACTGGTGGGAGCCCAAGCAGCAGCAC
AGACTGCAACTGCGATGACGACACTGCGCGGCAGCCCCGCGTTTACGCCG
CCCGCTACCACCAGTTGGCCCTCCTGTGCGCCTTGATTTTGACGAACGCC
GTGGTATGGGTGGCATTTAGCGCAATCACCCCCGCAACCGCTTCTACATT
CGGTGTGTCATCGGCTTGGATAAACGTTATAGCATTGAGCTTTCAAATCT
GCTTTTTGCCCGGGACGGTGATAGGTTACTGCTTGATGGAACGCTGGGGA
CTACGGGCCACGCTCTTGATGGGCGGGGTCCTGACGACAATGGGTGCAGT
GTTGCGATTGACTTCGTTGTATGTGCTGCCGAAATCGGATGGTGGTGGCG
GTGGCGGGGGGTACGTCCTCTTACTCTTTGGCACGTGTTTGGCGGCGTTG
GCACAGCCTTTACTTCTTAACGTTCCGCCTGCATTGGCAGGAAAATGGTT
TGAGGTAAAGCAACGTGATGTTGTGACTAGTCTGGCATTCATGTGCTCGC
CGTTGGGCAACGCAGTTGGTGTAACTGTAGCTCCTGCTTTTGTCGGAGGA
GGGGATGAAGGGAGTGGTGGCGCGAGCGCTCGGGATGGATTGCGGCTGTT
TCTATTGGCGCAATTGGTTGTTGTAGCAGCAACTACTGTGTGGGCATGGC
TTGGGGTAAAGGACAGTCCACCTACTCCACCCAGTCACACGGCCGCCCTT
CACGTCCAGCAGCAGCAAGATAAGCAATACGCGCGAGAGCTCCACCATCA
ACCAAGCATTCCGACGTGGCAAGCGCTCAAAACTGACCTGCACCGCTGCC
TGGTCCTCAACTCCTCTTTTCGCCTTCTCTTCGTCTGCTTCGGTTTGGGC
CTAGGGTTTTTTAATGCGCTTCTCACCCTTGTTGGTCAACTCCTCTCCCC
CTGCGGGTACAGCGATTCCGAATCGGGTGCGCTCGGAGGCATATTTATCG
GCACTGGCCTCCTAGGTGCCTTTCTCGCCGGCCTTATTCTCGACGCCACT
CATCACTACAGCCTCTGCTTGAAAGTAGGATTCATGGGGGCGTGGGTCGC
CTCATTCCTTTTTATCTCTGCGCTTCGCCCGAATAATTTGGCCTTTCTCG
CCACGAGCTTCGCTTTGTTGGGTCTTTGGATGCTACCCCTTTTGCCTGTC
GCGATTGAAAATGGCGTAGAGATAATGTTTCCGGAGGTTCCTGAATTTTT
CTCCTCTGGCTTGTTGTTGAGTGCGGGGAACTTGGCTGGGCTGCCATTAG
CGTCTTTGTTTTCTCTAGCCATTAATAGGTATGAGGAAAGAGAAGGGAGT
TGTCGAGTGTTTTGGAAGCCGCCAGCAGTCTTTGTGCTTTGTGTGACGAC
CTTGTGTGCGTTCCCGATATTGATGTATCGTCCTGCAAGGTTTGGGAGGT
GGGAGGCGGAGAAGCAGCAGCGGCAGCAGCGGCAACAGCAGTGCGGGGCT
AGCGAGGGAGGGGAGGGGGAAGGACAAATATGA
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protein sequence of NO10G01700.1

>NO10G01700.1-protein ID=NO10G01700.1-protein|Name=NO10G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MNAPFFTLTGGSPSSSTDCNCDDDTARQPRVYAARYHQLALLCALILTNA
VVWVAFSAITPATASTFGVSSAWINVIALSFQICFLPGTVIGYCLMERWG
LRATLLMGGVLTTMGAVLRLTSLYVLPKSDGGGGGGGYVLLLFGTCLAAL
AQPLLLNVPPALAGKWFEVKQRDVVTSLAFMCSPLGNAVGVTVAPAFVGG
GDEGSGGASARDGLRLFLLAQLVVVAATTVWAWLGVKDSPPTPPSHTAAL
HVQQQQDKQYARELHHQPSIPTWQALKTDLHRCLVLNSSFRLLFVCFGLG
LGFFNALLTLVGQLLSPCGYSDSESGALGGIFIGTGLLGAFLAGLILDAT
HHYSLCLKVGFMGAWVASFLFISALRPNNLAFLATSFALLGLWMLPLLPV
AIENGVEIMFPEVPEFFSSGLLLSAGNLAGLPLASLFSLAINRYEEREGS
CRVFWKPPAVFVLCVTTLCAFPILMYRPARFGRWEAEKQQRQQRQQQCGA
SEGGEGEGQI*
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mRNA from alignment at chr10:477318..478850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01700.1 ID=NO10G01700.1|Name=NO10G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr10:477318..478850+ (Nannochloropsis oceanica)
ATGAACGCCCCCTTCTTTACCCTGACTGGTGGGAGCCCAAGCAGCAGCAC
AGACTGCAACTGCGATGACGACACTGCGCGGCAGCCCCGCGTTTACGCCG
CCCGCTACCACCAGTTGGCCCTCCTGTGCGCCTTGATTTTGACGAACGCC
GTGGTATGGGTGGCATTTAGCGCAATCACCCCCGCAACCGCTTCTACATT
CGGTGTGTCATCGGCTTGGATAAACGTTATAGCATTGAGCTTTCAAATCT
GCTTTTTGCCCGGGACGGTGATAGGTTACTGCTTGATGGAACGCTGGGGA
CTACGGGCCACGCTCTTGATGGGCGGGGTCCTGACGACAATGGGTGCAGT
GTTGCGATTGACTTCGTTGTATGTGCTGCCGAAATCGGATGGTGGTGGCG
GTGGCGGGGGGTACGTCCTCTTACTCTTTGGCACGTGTTTGGCGGCGTTG
GCACAGCCTTTACTTCTTAACGTTCCGCCTGCATTGGCAGGAAAATGGTT
TGAGGTAAAGCAACGTGATGTTGTGACTAGTCTGGCATTCATGTGCTCGC
CGTTGGGCAACGCAGTTGGTGTAACTGTAGCTCCTGCTTTTGTCGGAGGA
GGGGATGAAGGGAGTGGTGGCGCGAGCGCTCGGGATGGATTGCGGCTGTT
TCTATTGGCGCAATTGGTTGTTGTAGCAGCAACTACTGTGTGGGCATGGC
TTGGGGTAAAGGACAGTCCACCTACTCCACCCAGTCACACGGCCGCCCTT
CACGTCCAGCAGCAGCAAGATAAGCAATACGCGCGAGAGCTCCACCATCA
ACCAAGCATTCCGACGTGGCAAGCGCTCAAAACTGACCTGCACCGCTGCC
TGGTCCTCAACTCCTCTTTTCGCCTTCTCTTCGTCTGCTTCGGTTTGGGC
CTAGGGTTTTTTAATGCGCTTCTCACCCTTGTTGGTCAACTCCTCTCCCC
CTGCGGGTACAGCGATTCCGAATCGGGTGCGCTCGGAGGCATATTTATCG
GCACTGGCCTCCTAGGTGCCTTTCTCGCCGGCCTTATTCTCGACGCCACT
CATCACTACAGCCTCTGCTTGAAAGTAGGATTCATGGGGGCGTGGGTCGC
CTCATTCCTTTTTATCTCTGCGCTTCGCCCGAATAATTTGGCCTTTCTCG
CCACGAGCTTCGCTTTGTTGGGTCTTTGGATGCTACCCCTTTTGCCTGTC
GCGATTGAAAATGGCGTAGAGATAATGTTTCCGGAGGTTCCTGAATTTTT
CTCCTCTGGCTTGTTGTTGAGTGCGGGGAACTTGGCTGGGCTGCCATTAG
CGTCTTTGTTTTCTCTAGCCATTAATAGGTATGAGGAAAGAGAAGGGAGT
TGTCGAGTGTTTTGGAAGCCGCCAGCAGTCTTTGTGCTTTGTGTGACGAC
CTTGTGTGCGTTCCCGATATTGATGTATCGTCCTGCAAGGTTTGGGAGGT
GGGAGGCGGAGAAGCAGCAGCGGCAGCAGCGGCAACAGCAGTGCGGGGCT
AGCGAGGGAGGGGAGGGGGAAGGACAAATATGA
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Coding sequence (CDS) from alignment at chr10:477318..478850+

>NO10G01700.1 ID=NO10G01700.1|Name=NO10G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr10:477318..478850+ (Nannochloropsis oceanica)
ATGAACGCCCCCTTCTTTACCCTGACTGGTGGGAGCCCAAGCAGCAGCAC
AGACTGCAACTGCGATGACGACACTGCGCGGCAGCCCCGCGTTTACGCCG
CCCGCTACCACCAGTTGGCCCTCCTGTGCGCCTTGATTTTGACGAACGCC
GTGGTATGGGTGGCATTTAGCGCAATCACCCCCGCAACCGCTTCTACATT
CGGTGTGTCATCGGCTTGGATAAACGTTATAGCATTGAGCTTTCAAATCT
GCTTTTTGCCCGGGACGGTGATAGGTTACTGCTTGATGGAACGCTGGGGA
CTACGGGCCACGCTCTTGATGGGCGGGGTCCTGACGACAATGGGTGCAGT
GTTGCGATTGACTTCGTTGTATGTGCTGCCGAAATCGGATGGTGGTGGCG
GTGGCGGGGGGTACGTCCTCTTACTCTTTGGCACGTGTTTGGCGGCGTTG
GCACAGCCTTTACTTCTTAACGTTCCGCCTGCATTGGCAGGAAAATGGTT
TGAGGTAAAGCAACGTGATGTTGTGACTAGTCTGGCATTCATGTGCTCGC
CGTTGGGCAACGCAGTTGGTGTAACTGTAGCTCCTGCTTTTGTCGGAGGA
GGGGATGAAGGGAGTGGTGGCGCGAGCGCTCGGGATGGATTGCGGCTGTT
TCTATTGGCGCAATTGGTTGTTGTAGCAGCAACTACTGTGTGGGCATGGC
TTGGGGTAAAGGACAGTCCACCTACTCCACCCAGTCACACGGCCGCCCTT
CACGTCCAGCAGCAGCAAGATAAGCAATACGCGCGAGAGCTCCACCATCA
ACCAAGCATTCCGACGTGGCAAGCGCTCAAAACTGACCTGCACCGCTGCC
TGGTCCTCAACTCCTCTTTTCGCCTTCTCTTCGTCTGCTTCGGTTTGGGC
CTAGGGTTTTTTAATGCGCTTCTCACCCTTGTTGGTCAACTCCTCTCCCC
CTGCGGGTACAGCGATTCCGAATCGGGTGCGCTCGGAGGCATATTTATCG
GCACTGGCCTCCTAGGTGCCTTTCTCGCCGGCCTTATTCTCGACGCCACT
CATCACTACAGCCTCTGCTTGAAAGTAGGATTCATGGGGGCGTGGGTCGC
CTCATTCCTTTTTATCTCTGCGCTTCGCCCGAATAATTTGGCCTTTCTCG
CCACGAGCTTCGCTTTGTTGGGTCTTTGGATGCTACCCCTTTTGCCTGTC
GCGATTGAAAATGGCGTAGAGATAATGTTTCCGGAGGTTCCTGAATTTTT
CTCCTCTGGCTTGTTGTTGAGTGCGGGGAACTTGGCTGGGCTGCCATTAG
CGTCTTTGTTTTCTCTAGCCATTAATAGGTATGAGGAAAGAGAAGGGAGT
TGTCGAGTGTTTTGGAAGCCGCCAGCAGTCTTTGTGCTTTGTGTGACGAC
CTTGTGTGCGTTCCCGATATTGATGTATCGTCCTGCAAGGTTTGGGAGGT
GGGAGGCGGAGAAGCAGCAGCGGCAGCAGCGGCAACAGCAGTGCGGGGCT
AGCGAGGGAGGGGAGGGGGAAGGACAAATATGA
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Synonyms
Publications