NO10G01670.1, NO10G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01670.1
Unique NameNO10G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2015
Alignment locationchr10:472813..475403 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:472813..475403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01670.1 vs.
Match: XP_013756786.1 (inframe stop codon [Thecamonas trahens ATCC 50062]; KNC50831.1 inframe stop codon [Thecamonas trahens ATCC 50062])

HSP 1 Score: 164.5 bits (415), Expect = 5.100e-37
Identity = 89/273 (32.60%), Postives = 151/273 (55.31%), Query Frame = 0 
Query:   19 PPTSAARVVRRKPYSVTRTKDIIIEASKCAPAKFQPLVAAAAWVIASIGLVFSLVAPVCKYFVAILSRFYKALEPWHPENLLEAVLGLFIAFFGGSFFLVVASAEAWRAATWEKNKKDLRVIYEDAVKVHDANKKDALVDADNNGVADIDEMDATKLFVHKLHIVFTSVNPEKLGSAVGNLNLAALAIIAALKVRFARIITLGRAMAEILSPVAKRILGPALAFCLPKDYQQWGAPSVGFLVQIAAIQVAWMLQRLLATVHSAMRGGMMFSRG 292
            PP   A  V+    S     +I   A   AP    P +A  A  +A +G +  +V P  +   A    F+ A++P+HPE    A LG  + FFG SF + +A+ EA+R   WE  +  +  +YED   V +A +KD+L+D +N+G+AD+D++   +L   K+ ++  + NP K+  A+  +N   +A++A LK+ FA  ITLG ++A  L   + + L P+L   +  +Y +W  P + +  Q   I +A+ L R++AT H+A++GG +F++G
Sbjct:   15 PPMMVAEDVQMDNMSKEEVMEI---AEDSAPPFLLPYIAKVAPALAVLGTIIDVVGPHVENVAAAAVAFWAAIQPYHPEEFAVAGLGFIVCFFGSSFMVSIAAVEAFRLCGWETTRDCILSLYEDYKIVREAYRKDSLLDENNDGIADVDQITKKELASRKVRVILRACNPVKIQHAIAGINAGVIAVVATLKIHFAEAITLGTSIASTLVRASNKTLKPSLQRIVEPEYHKWIDPVIQYACQTIGISIAYTLHRIIATFHAAVKGGFLFTKG 284
The following BLAST results are available for this feature:
BLAST of NO10G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_013756786.15.100e-3732.60inframe stop codon [Thecamonas trahens ATCC 50062]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01670NO10G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01670.1NO10G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01670.1.cds1NO10G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01670.1.cds2NO10G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01670.1.cds3NO10G01670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01670.1 ID=NO10G01670.1|Name=NO10G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
ACGCCCCTCCTACAGAAGAGCAAGCTTCACGAGCAGATATACGCCAAAGT
TCAATCCATAAACCCGTTCAACCGTAGGTGAAGCCACGAACAGCGGCATG
GATGCCTCCGTAACGGCCGCGGCGAAGGCCGCGCCCAAGCCCGCCGCAAT
CCCCCCAACGTCTGCTGCACGTGTCGTGCGTCGCAAGCCCTACAGCGTCA
CCCGCACCAAAGATATCATCATCGAGGCCTCCAAATGCGCCCCCGCCAAG
TTTCAACCTTTAGTCGCCGCTGCTGCTTGGGTCATCGCTTCGATCGGCCT
GGTCTTTTCTCTTGTCGCACCCGTCTGTAAATACTTCGTCGCAATCCTTT
CTCGATTTTATAAGGCTCTCGAGCCTTGGCACCCGGAAAATCTGCTCGAG
GCTGTCTTAGGTCTGTTTATTGCCTTTTTTGGCGGCAGCTTCTTCCTAGT
CGTTGCATCGGCGGAGGCGTGGCGGGCGGCGACATGGGAGAAGAATAAGA
AGGACTTGCGGGTCATCTACGAGGATGCGGTAAAGGTCCACGATGCCAAT
AAGAAAGACGCCCTGGTCGACGCCGACAACAACGGCGTAGCCGACATCGA
TGAAATGGATGCCACCAAGCTCTTTGTCCACAAGCTACACATCGTCTTTA
CCTCTGTCAATCCGGAAAAACTGGGCTCGGCCGTGGGGAACCTCAACCTG
GCTGCCCTTGCGATCATTGCCGCTTTGAAAGTGCGGTTTGCGAGAATCAT
TACTTTGGGACGAGCCATGGCGGAGATACTTTCGCCTGTTGCAAAGAGGA
TTCTAGGCCCGGCATTGGCTTTTTGCCTGCCGAAGGATTATCAGCAGTGG
GGGGCGCCGTCGGTCGGGTTTTTGGTCCAAATCGCTGCTATACAGGTTGC
CTGGATGCTGCAACGGCTGCTGGCGACGGTGCATAGTGCGATGAGGGGGG
GAATGATGTTCAGTAGGGGGGGTTGGCGTACCTGAGGAAGGAGGGGTACA
TTAAGAAGGAAGATAAGGACACGTACGCGGATGAGATCGTGGGGGCTACA
ACGGCCATTCTAGGTTTTGCCTTCCAGACGTCTTTGCGTTGGCGCTTGCC
GTTCCCTGTTAACATTATCCTCTTGCCCGTGACCATTTTGGAGACATTTC
TTTATTACTACGTTGCGGCGTAAAGAGGGTAGGCACTAGAGTGAAACTAA
GGAGGAACGGGATGTTGGAGACATGAGAGGAAGGGAGGACGGGGATGAGG
AGGAAGTGAAAAAGGTGGCAATGAGGCATGAATGTGTAGCAGTGGTCCTT
AGGGTGCGTGGCTGTGTATGTCTGCTCTGGGTGCGCTGAAACAGAGATCA
TAGGGAGCGGGGACTACAGGAAAACAAACGAAAGAAGAGAAAATCAACTT
TGAGCAGAAACCACCGCACTGATTGACTCTTTCACTTTATGACACACAAC
TTTTCCCTTATTGCTTTACAAACCCAAGTGACCCCTCCTTTAAGCACTCC
CTGCCGTATGCATCACCATCCCTCTAGCTGAAGTCAGAGCACCGGCCCTT
GCGCTCCCAGTCTCCATATCGAGTCGGCTCCTTGTGCTGCCCTCCCCGTG
TGGGCCCCCCCCACTCCATTGTACCCGATGGGCCCATCACAAACATCTCC
TCCATCTCGTCTTCGTGCTCTTCCACAGGGTCCGGGCCGCACGCCGGCTT
CTTGATGGTTGTTATCATGTGCTTATCTGCCACCACTACTTTGCCGTCTT
CCTCCTCTTTGTCGACAGCGGTGGCGCGGGTAACCTTGACAGCAGCGACA
TTATCTGGAAAAGGAGCGGTGGTCAAACGTCTTCCCCGTGACACTGATAC
GATTGGCTGCGGGTGTGCGTTGCGCTTTGCGTGGCGCACAGAATGCCGCA
GCAATAACGTGTCGCATGCCGGGGCGACAGACAATGATGCTGCTCCTGAG
ATAGCCAGGAATCTACGGACAAGGTTTCCGGGCACAGTCATTTGGGCTAC
GATTAAGAAGGTCTG
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protein sequence of NO10G01670.1

>NO10G01670.1-protein ID=NO10G01670.1-protein|Name=NO10G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MDASVTAAAKAAPKPAAIPPTSAARVVRRKPYSVTRTKDIIIEASKCAPA
KFQPLVAAAAWVIASIGLVFSLVAPVCKYFVAILSRFYKALEPWHPENLL
EAVLGLFIAFFGGSFFLVVASAEAWRAATWEKNKKDLRVIYEDAVKVHDA
NKKDALVDADNNGVADIDEMDATKLFVHKLHIVFTSVNPEKLGSAVGNLN
LAALAIIAALKVRFARIITLGRAMAEILSPVAKRILGPALAFCLPKDYQQ
WGAPSVGFLVQIAAIQVAWMLQRLLATVHSAMRGGMMFSRGGWRT*
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mRNA from alignment at chr10:472813..475403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01670.1 ID=NO10G01670.1|Name=NO10G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at chr10:472813..475403- (Nannochloropsis oceanica)
ACGCCCCTCCTACAGAAGAGCAAGCTTCACGAGCAGATATACGCCAAAGT
TCAATCCATAAACCCGTTCAACCGTAGGTGAAGCCACGAACAGCGGCATG
GATGCCTCCGTAACGGCCGCGGCGAAGGCCGCGCCCAAGCCCGCCGCAAT
CCCCCCAACGTCTGCTGCACGTGTCGTGCGTCGCAAGCCCTACAGGTACG
CCCCTTCTCTCCCCTCTTTGTTTCACCTAGTGCCACGGATGCTGATGCTG
ATGATTATCACAAATACGCGGCGAGACTACGTGACTGCACACAACAGAGA
GGCTGGAGGCCAGGATGTGCCAAACGTGTAGTTCCTCCCCCTCCGTGATC
CGTTTCTCACTAACTCAGTACCTATCCGATCACACGCAGCGTCACCCGCA
CCAAAGATATCATCATCGAGGCCTCCAAATGCGCCCCCGCCAAGTTTCAA
CCTTTAGTCGCCGCTGCTGCTTGGGTCATCGCTTCGATCGGCCTGGTCTT
TTCTCTTGTCGCACCCGTCTGTAAATACTTCGTCGCAATCCTTTCTCGAT
TTTATAAGGCTCTCGAGCCTTGGCACCCGGAAAATCTGCTCGAGGCTGTC
TTAGGTCTGTTTATTGCCTTTTTTGGCGGCAGCTTCTTCCTAGTCGTTGC
ATCGGCGGAGGCGTGGCGGGCGGCGACATGGGAGAAGAATAAGAAGGACT
TGCGGGTCATCTACGAGGATGCGGTAAAGGTCCACGATGCCAATAAGAAA
GGTGAGATCAGCAAATAGGGTGTGCGTAAGTGTATGTTATTCTTGTGTTT
GTCCGCTCCTTGCCATTCTAAGGCATGCGTATGTCCGCAAAGGTTGATGG
TTTGCCATTTACTCATCTATGTGATTCTAATGAAGGTCATACATACCCAT
GCGTGCGTACGATGCTGAGAGCCCCCTCCTTACTTCCTCATCCATTCTTC
CTCCCAGACGCCCTGGTCGACGCCGACAACAACGGCGTAGCCGACATCGA
TGAAATGGATGCCACCAAGCTCTTTGTCCACAAGCTACACATCGTCTTTA
CCTCTGTCAATCCGGAAAAACTGGGCTCGGCCGTGGGGAACCTCAACCTG
GCTGCCCTTGCGATCATTGCCGCTTTGAAAGTGCGGTTTGCGAGAATCAT
TACTTTGGGACGAGCCATGGCGGAGATACTTTCGCCTGTTGCAAAGAGGA
TTCTAGGCCCGGCATTGGCTTTTTGCCTGCCGAAGGATTATCAGCAGTGG
GGGGCGCCGTCGGTCGGGTTTTTGGTCCAAATCGCTGCTATACAGGTTGC
CTGGATGCTGCAACGGCTGCTGGCGACGGTGCATAGTGCGATGAGGGGGG
GAATGATGTTCAGTAGGGGGGGTTGGCGTACCTGAGGAAGGAGGGGTACA
TTAAGAAGGAAGATAAGGACACGTACGCGGATGAGATCGTGGGGGCTACA
ACGGCCAGTAAGTGCTCAAGGGGGAGGAGGGGGAGGAGGGGGACCGAAAA
GGGTAAGGATATTTTCCATTTTTATTCTTTGACTTTCTTGGAGACAAAAG
CGTGCTCAGGTTATCCATTTCTTTGATCTCAAAGCCATGGCTGAATGTGT
CGCTTACCACTTTCCTCCCACCACCCTCAATAGTTCTAGGTTTTGCCTTC
CAGACGTCTTTGCGTTGGCGCTTGCCGTTCCCTGTTAACATTATCCTCTT
GCCCGTGACCATTTTGGAGACATTTCTTTATTACTACGTTGCGGCGTAAA
GAGGGTAGGCACTAGAGTGAAACTAAGGAGGAACGGGATGTTGGAGACAT
GAGAGGAAGGGAGGACGGGGATGAGGAGGAAGTGAAAAAGGTGGCAATGA
GGCATGAATGTGTAGCAGTGGTCCTTAGGGTGCGTGGCTGTGTATGTCTG
CTCTGGGTGCGCTGAAACAGAGATCATAGGGAGCGGGGACTACAGGAAAA
CAAACGAAAGAAGAGAAAATCAACTTTGAGCAGAAACCACCGCACTGATT
GACTCTTTCACTTTATGACACACAACTTTTCCCTTATTGCTTTACAAACC
CAAGTGACCCCTCCTTTAAGCACTCCCTGCCGTATGCATCACCATCCCTC
TAGCTGAAGTCAGAGCACCGGCCCTTGCGCTCCCAGTCTCCATATCGAGT
CGGCTCCTTGTGCTGCCCTCCCCGTGTGGGCCCCCCCCACTCCATTGTAC
CCGATGGGCCCATCACAAACATCTCCTCCATCTCGTCTTCGTGCTCTTCC
ACAGGGTCCGGGCCGCACGCCGGCTTCTTGATGGTTGTTATCATGTGCTT
ATCTGCCACCACTACTTTGCCGTCTTCCTCCTCTTTGTCGACAGCGGTGG
CGCGGGTAACCTTGACAGCAGCGACATTATCTGGAAAAGGAGCGGTGGTC
AAACGTCTTCCCCGTGACACTGATACGATTGGCTGCGGGTGTGCGTTGCG
CTTTGCGTGGCGCACAGAATGCCGCAGCAATAACGTGTCGCATGCCGGGG
CGACAGACAATGATGCTGCTCCTGAGATAGCCAGGAATCTACGGACAAGG
TTTCCGGGCACAGTCATTTGGGCTACGATTAAGAAGGTCTG
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Coding sequence (CDS) from alignment at chr10:472813..475403-

>NO10G01670.1 ID=NO10G01670.1|Name=NO10G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr10:472813..475403- (Nannochloropsis oceanica)
ATGGATGCCTCCGTAACGGCCGCGGCGAAGGCCGCGCCCAAGCCCGCCGC
AATCCCCCCAACGTCTGCTGCACGTGTCGTGCGTCGCAAGCCCTACAGCG
TCACCCGCACCAAAGATATCATCATCGAGGCCTCCAAATGCGCCCCCGCC
AAGTTTCAACCTTTAGTCGCCGCTGCTGCTTGGGTCATCGCTTCGATCGG
CCTGGTCTTTTCTCTTGTCGCACCCGTCTGTAAATACTTCGTCGCAATCC
TTTCTCGATTTTATAAGGCTCTCGAGCCTTGGCACCCGGAAAATCTGCTC
GAGGCTGTCTTAGGTCTGTTTATTGCCTTTTTTGGCGGCAGCTTCTTCCT
AGTCGTTGCATCGGCGGAGGCGTGGCGGGCGGCGACATGGGAGAAGAATA
AGAAGGACTTGCGGGTCATCTACGAGGATGCGGTAAAGGTCCACGATGCC
AATAAGAAAGACGCCCTGGTCGACGCCGACAACAACGGCGTAGCCGACAT
CGATGAAATGGATGCCACCAAGCTCTTTGTCCACAAGCTACACATCGTCT
TTACCTCTGTCAATCCGGAAAAACTGGGCTCGGCCGTGGGGAACCTCAAC
CTGGCTGCCCTTGCGATCATTGCCGCTTTGAAAGTGCGGTTTGCGAGAAT
CATTACTTTGGGACGAGCCATGGCGGAGATACTTTCGCCTGTTGCAAAGA
GGATTCTAGGCCCGGCATTGGCTTTTTGCCTGCCGAAGGATTATCAGCAG
TGGGGGGCGCCGTCGGTCGGGTTTTTGGTCCAAATCGCTGCTATACAGGT
TGCCTGGATGCTGCAACGGCTGCTGGCGACGGTGCATAGTGCGATGAGGG
GGGGAATGATGTTCAGTAGGGGGGGTTGGCGTACCTGA
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Synonyms
Publications