NO10G01650.2, NO10G01650.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01650.2
Unique NameNO10G01650.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr10:467328..469141 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:467328..469141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01650.2 vs.
Match: EWM25436.1 (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 307.4 bits (786), Expect = 5.200e-80
Identity = 151/192 (78.65%), Postives = 168/192 (87.50%), Query Frame = 0 
Query:   84 EPLRPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRDETLSKLFRSDIKETF 276
            +PLRPN+KV FLQK+AKGNVDP+ELFTRGV SK FQ +LKNVEIQHRIL+EMPLLAAFDGFRQI GRRL+  +T EGF  GVQN++ FAK AF+K+KDPQQT  TIAKMAADPNPAIQ LFRRAQ GD  AVEELQDVFNDLHFPGV++RVLREV  NHTF+KLL+MPEIMRFIDR+E  S  FRSDIKETF
Sbjct:  115 QPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRSDIKETF 306
The following BLAST results are available for this feature:
BLAST of NO10G01650.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25436.15.200e-8078.65hypothetical protein Naga_100005g87 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01650NO10G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01650.2NO10G01650.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01650.2.cds1NO10G01650.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01650.2.cds2NO10G01650.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01650.2 ID=NO10G01650.2|Name=NO10G01650.2|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
ACGACAGGGCTATACTGCACTCTGTACGTCAGCTGAGGTCATGACGACGG
CGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGAGGCGTA
CTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAACGCAAA
CGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCGGGAGCG
GGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTTGAGCGG
CAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGGATTCAA
CCGTAAGTCAAGAGAGGAGAAGGACATGGAGACGCAGTTTTTCAAACCTT
TAACGAAGACGACAGCCAGACCGCAGCCATTTCTTTGCTTGACATGCCTC
CATTTTCTGTGGGATGGGAATTATTGGCAGGGCTTAAGCTCAGATGTGGT
GGGCAAGTATGGGCGCCCAGCATGTCTCCCAAAAACATGTCCTCGTCTGT
CCGGCACGGTGCTTCTCCCTTAACCGCGCATTTATTCCCACAATTTTCTC
ACAGAAGTGCCACGGATGCTGCTTATCGTACCCTGCAGTTGATTGTCAAG
TGCTTAAACACTCATGTACCCAACATTCGCCATCCCTTTTTCCGCCCTCC
ATACTCACTCGCCTCCCTTCTCTAACGGCACCCTCATCTATAGAACCCCT
CCGACCGAATGAGAAAGTCAAATTCCTGCAAAAGATGGCCAAGGGCAATG
TTGATCCTATGGAATTGTTTACCCGCGGTGTGAACAGCAAGGGCTTTCAG
GTCTTGTTGAAGAACGTGGAAATCCAGCATCGCATTTTGGAGGAGATGCC
TTTATTGGCTGCGTTTGATGGCTTCCGGCAGATTATGGGAAGACGCTTGA
ATGATGAGCAGACCGCCGAGGGCTTTACGCGAGGGGTGCAAAACATTCTA
ACCTTCGCCAAAGAAGCCTTCGTCAAAATCAAAGATCCGCAACAAACTGT
TAACACCATCGCAAAGATGGCCGCGGATCCCAACCCTGCCATTCAAGATT
TGTTCCGGCGGGCGCAGGCGGGAGATAGTAAGGCTGTGGAGGAACTGCAG
GATGTGTTCAATGACTTGCATTTCCCTGGGGTGAACGTACGGGTGCTGCG
GGAGGTGGCGGAGAACCATACTTTTGACAAATTGCTGGCCATGCCCGAGA
TAATGCGATTTATTGATCGTGATGAGACGCTTTCGAAGTTGTTTCGTTCG
GATATCAAGGAGACTTTCTCGTTTAAGGGGCAGGAGAATGGGATGTTTGG
GGCGAGCAAAGAGCAGGCAGCAAGTGGGGCTGCGGCAGCGAAGGTTGAAA
GTTCCACGACGACAACCACAACGACGGTGCCATAAGAACAGACCAGGCCA
AGGCAAAAGCATGAGCCCGGAAGACCTATTTTTACATTTATTGACTTACG
TGCCGCTTCAAAAATGTTATTTAATTTACAATAGAGGGGGGAGAATCTGG
TGCATGGGCAAGAAATCATCACAAAGAATGAAAG
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protein sequence of NO10G01650.2

>NO10G01650.2-protein ID=NO10G01650.2-protein|Name=NO10G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MWWASMGAQHVSQKHVLVCPARCFSLNRAFIPTIFSQKCHGCCLSYPAVD
CQVLKHSCTQHSPSLFPPSILTRLPSLTAPSSIEPLRPNEKVKFLQKMAK
GNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGR
RLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAI
QDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAM
PEIMRFIDRDETLSKLFRSDIKETFSFKGQENGMFGASKEQAASGAAAAK
VESSTTTTTTTVP*
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mRNA from alignment at chr10:467328..469141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01650.2 ID=NO10G01650.2|Name=NO10G01650.2|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at chr10:467328..469141+ (Nannochloropsis oceanica)
ACGACAGGGCTATACTGCACTCTGTACGTCAGCTGAGGTCATGACGACGG
CGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGAGGCGTA
CTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAACGCAAA
CGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCGGGAGCG
GGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTTGAGCGG
CAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGGATTCAA
CCGTAAGTCAAGAGAGGAGAAGGACATGGAGACGCAGTTTTTCAAACCTT
TAACGAAGACGACAGCCAGACCGCAGCCATTTCTTTGCTTGACATGCCTC
CATTTTCTGTGGGATGGGAATTATTGGCAGGGCTTAAGCTCAGATGTGGT
GGGCAAGTATGGGCGCCCAGCATGTCTCCCAAAAACATGTCCTCGTCTGT
CCGGCACGGTGCTTCTCCCTTAACCGCGCATTTATTCCCACAATTTTCTC
ACAGAAGTGCCACGGATGCTGCTTATCGTACCCTGCAGTTGATTGTCAAG
TGCTTAAACACTCATGTACCCAACATTCGCCATCCCTTTTTCCGCCCTCC
ATACTCACTCGCCTCCCTTCTCTAACGGCACCCTCATCTATAGAACCCCT
CCGACCGAATGAGAAAGTCAAATTCCTGCAAAAGATGGCCAAGGGCAATG
TTGATCCTATGGAATTGTTTACCCGCGGTGTGAACAGCAAGGGCTTTCAG
GTCTTGTTGAAGAACGTGGAAATCCAGCATCGCATTTTGGAGGAGATGCC
TTTATTGGCTGCGTTTGATGGCTTCCGGCAGATTATGGGAAGACGCTTGA
ATGATGAGCAGGTATGTCTCAGTATGAGCGAAGGAATAAGAGGTGTGGAG
GGCAGAAGAAGAACGTGGCGAGAAAACTGAGGTCGTATGAGATGACTTGG
GGTGTTATCTGTTCCAGTGGCGCTCGATCATCTCTATAAACCACTTTCGC
ATTCTAAGTACACTTACTATGAGCATATTTTGAGACATAGAATTATAAGC
TATATATGATCAGACGCTAACGAAATCTAATTCGATCTCACCATTCTTAC
CTCCCTCCTTTCTTCCCTCCCTCTCTCATTTTTCCAATCAGACCGCCGAG
GGCTTTACGCGAGGGGTGCAAAACATTCTAACCTTCGCCAAAGAAGCCTT
CGTCAAAATCAAAGATCCGCAACAAACTGTTAACACCATCGCAAAGATGG
CCGCGGATCCCAACCCTGCCATTCAAGATTTGTTCCGGCGGGCGCAGGCG
GGAGATAGTAAGGCTGTGGAGGAACTGCAGGATGTGTTCAATGACTTGCA
TTTCCCTGGGGTGAACGTACGGGTGCTGCGGGAGGTGGCGGAGAACCATA
CTTTTGACAAATTGCTGGCCATGCCCGAGATAATGCGATTTATTGATCGT
GATGAGACGCTTTCGAAGTTGTTTCGTTCGGATATCAAGGAGACTTTCTC
GTTTAAGGGGCAGGAGAATGGGATGTTTGGGGCGAGCAAAGAGCAGGCAG
CAAGTGGGGCTGCGGCAGCGAAGGTTGAAAGTTCCACGACGACAACCACA
ACGACGGTGCCATAAGAACAGACCAGGCCAAGGCAAAAGCATGAGCCCGG
AAGACCTATTTTTACATTTATTGACTTACGTGCCGCTTCAAAAATGTTAT
TTAATTTACAATAGAGGGGGGAGAATCTGGTGCATGGGCAAGAAATCATC
ACAAAGAATGAAAG
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Coding sequence (CDS) from alignment at chr10:467328..469141+

>NO10G01650.2 ID=NO10G01650.2|Name=NO10G01650.2|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr10:467328..469141+ (Nannochloropsis oceanica)
ATGTGGTGGGCAAGTATGGGCGCCCAGCATGTCTCCCAAAAACATGTCCT
CGTCTGTCCGGCACGGTGCTTCTCCCTTAACCGCGCATTTATTCCCACAA
TTTTCTCACAGAAGTGCCACGGATGCTGCTTATCGTACCCTGCAGTTGAT
TGTCAAGTGCTTAAACACTCATGTACCCAACATTCGCCATCCCTTTTTCC
GCCCTCCATACTCACTCGCCTCCCTTCTCTAACGGCACCCTCATCTATAG
AACCCCTCCGACCGAATGAGAAAGTCAAATTCCTGCAAAAGATGGCCAAG
GGCAATGTTGATCCTATGGAATTGTTTACCCGCGGTGTGAACAGCAAGGG
CTTTCAGGTCTTGTTGAAGAACGTGGAAATCCAGCATCGCATTTTGGAGG
AGATGCCTTTATTGGCTGCGTTTGATGGCTTCCGGCAGATTATGGGAAGA
CGCTTGAATGATGAGCAGACCGCCGAGGGCTTTACGCGAGGGGTGCAAAA
CATTCTAACCTTCGCCAAAGAAGCCTTCGTCAAAATCAAAGATCCGCAAC
AAACTGTTAACACCATCGCAAAGATGGCCGCGGATCCCAACCCTGCCATT
CAAGATTTGTTCCGGCGGGCGCAGGCGGGAGATAGTAAGGCTGTGGAGGA
ACTGCAGGATGTGTTCAATGACTTGCATTTCCCTGGGGTGAACGTACGGG
TGCTGCGGGAGGTGGCGGAGAACCATACTTTTGACAAATTGCTGGCCATG
CCCGAGATAATGCGATTTATTGATCGTGATGAGACGCTTTCGAAGTTGTT
TCGTTCGGATATCAAGGAGACTTTCTCGTTTAAGGGGCAGGAGAATGGGA
TGTTTGGGGCGAGCAAAGAGCAGGCAGCAAGTGGGGCTGCGGCAGCGAAG
GTTGAAAGTTCCACGACGACAACCACAACGACGGTGCCATAA
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Synonyms
Publications