NO10G01630.1, NO10G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01630.1
Unique NameNO10G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr10:462773..464080 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:462773..464080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01630.1 vs.
Match: EWM25424.1 (ring zinc finger-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 549.7 bits (1415), Expect = 8.300e-153
Identity = 294/436 (67.43%), Postives = 332/436 (76.15%), Query Frame = 0 
Query:    1 MASTGPSSASSTSSPLPPPLVPPTVPSLSENASVVPLDPLRAPVEL-QRYYPDATAAAAAAAAGSSSSLLRLISGTRGAAGAMSGSGVMKVNQMDAQVLDTELLDLLRIQLGTILAPPFFPPGFMDKYKPELNALLDLLLFRFTIFQNDPTPGMRMQNLRFVNGRILGTSSSTFSSASDIHAPRVSQRLLLGLLYIGGKWGFARLRRHALVAGWADEAQQQQHQQFHPAAVDPHIGGNGGSSDSSRGSTPLHGEQWKRWAYRALDRAENLFRLAWLINFLVFLRVGRYPSLLQRLTGMRLVYGDAFAGASRSINFQFMNRQLLWEHFTQLALCVVPLIDWDGLRRQVSGLIRQRRLGAGAAGS-ADGGASIPGAGGADGDMECVMCGEGEAQTPYVTDCGHVYCYYCLKTACLQDDAFACPRCGTFFATSKRWVPG 435
            + S+ PSS+  TS  L PP  PP+     EN  V+P DPL+ PV L   ++P A+  +A    G    L              + SGVMKVNQ+DA+VLDTELLDLL+IQL ++ APPFF PG +DKYKPEL ALLD LLFRFTIFQN+PTPGMRMQNLRFV+G  +GTS S+ +S+ D HAPRVSQRLLLG L I G+WGFARLRRHALVAGWADE Q  Q    H +  D    G G  S  +RG     G QWKR AYRAL RAE+LFRLAWLINFLVFLRVG YPSLLQRL GMRLVYG +  GA+R+INFQFMNRQLLWEHFTQLALCVVPL+DWDGLRRQVSGLIRQRR GA AAG+ A GG+   GAGGADGDMECV+CGE  AQTPYVTDCGH+YCYYCLKTACLQDD+F+CPRCGTFFATS+RWVPG
Sbjct:   19 LPSSPPSSSQQTSPALLPPSPPPSAHR-PENTIVIPADPLQTPVALYSEHHPGASVESARGKPGGGWGL------------DTASSGVMKVNQVDARVLDTELLDLLQIQLCSMFAPPFFAPGVVDKYKPELKALLDFLLFRFTIFQNEPTPGMRMQNLRFVDGHAIGTSVSSAASSVDAHAPRVSQRLLLGFLCIAGQWGFARLRRHALVAGWADEVQHPQPLISHTS--DAQARGQGERSSGTRG-----GGQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQRLVGMRLVYGPSSGGAARNINFQFMNRQLLWEHFTQLALCVVPLVDWDGLRRQVSGLIRQRRAGAWAAGAGAGGGSEFRGAGGADGDMECVVCGEESAQTPYVTDCGHIYCYYCLKTACLQDDSFSCPRCGTFFATSRRWVPG 434
The following BLAST results are available for this feature:
BLAST of NO10G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25424.18.300e-15367.43ring zinc finger-containing protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01630NO10G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01630.1NO10G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01630.1.cds1NO10G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01630.1 ID=NO10G01630.1|Name=NO10G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ATGGCGTCAACCGGCCCCTCCTCGGCCTCTTCGACTTCATCACCACTGCC
GCCCCCACTAGTGCCCCCAACGGTACCATCCCTGTCTGAAAATGCCTCCG
TCGTGCCCTTGGATCCCTTGCGTGCACCCGTGGAGCTGCAGCGATACTAC
CCCGACGCGACAGCAGCAGCAGCAGCAGCAGCAGCCGGGTCATCGTCCTC
CTTGCTACGTCTCATATCAGGCACGAGAGGCGCCGCGGGGGCAATGTCAG
GAAGTGGTGTGATGAAGGTGAATCAAATGGATGCTCAAGTACTTGATACG
GAGCTGCTTGATTTGCTGCGAATTCAATTAGGCACAATTTTGGCCCCGCC
CTTCTTCCCACCCGGGTTCATGGACAAGTATAAGCCCGAGCTCAATGCCC
TCTTGGATCTTCTCCTCTTCCGCTTCACCATATTTCAAAACGATCCCACG
CCCGGGATGCGCATGCAAAACCTTCGTTTCGTCAATGGGCGCATCCTTGG
CACTTCCTCCTCCACTTTCTCGTCTGCATCTGACATTCATGCCCCACGAG
TGAGCCAGCGTCTGTTGTTGGGTCTGTTGTACATTGGAGGTAAATGGGGA
TTTGCCCGACTGCGACGACATGCCCTCGTGGCAGGATGGGCGGATGAAGC
TCAGCAGCAACAACATCAACAATTCCATCCAGCTGCAGTAGATCCACATA
TCGGTGGGAATGGTGGCAGCAGCGACAGCAGCCGCGGGAGCACTCCTTTA
CATGGCGAGCAATGGAAGCGCTGGGCCTACCGTGCATTGGACCGAGCCGA
AAACCTCTTCCGCCTTGCATGGCTTATCAATTTCCTGGTGTTCTTGCGTG
TGGGTCGTTATCCTTCTTTATTGCAACGACTGACGGGGATGCGACTGGTG
TATGGGGATGCCTTTGCGGGGGCGAGCCGAAGTATTAATTTCCAGTTTAT
GAACAGGCAGTTGCTGTGGGAGCACTTCACGCAGCTGGCTTTGTGTGTGG
TACCCTTGATAGATTGGGACGGATTAAGAAGGCAAGTGTCAGGTCTGATC
AGACAGAGGAGGTTGGGGGCGGGAGCGGCGGGTTCGGCGGATGGAGGGGC
GAGCATACCGGGGGCCGGCGGGGCGGATGGGGATATGGAGTGTGTGATGT
GCGGGGAGGGGGAGGCACAGACACCTTATGTCACGGATTGTGGGCATGTG
TATTGTTACTACTGCTTGAAGACAGCGTGTTTGCAGGATGATGCTTTTGC
GTGTCCGCGGTGCGGGACGTTTTTTGCGACGTCGAAACGGTGGGTCCCTG
GGCAGTAG
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protein sequence of NO10G01630.1

>NO10G01630.1-protein ID=NO10G01630.1-protein|Name=NO10G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MASTGPSSASSTSSPLPPPLVPPTVPSLSENASVVPLDPLRAPVELQRYY
PDATAAAAAAAAGSSSSLLRLISGTRGAAGAMSGSGVMKVNQMDAQVLDT
ELLDLLRIQLGTILAPPFFPPGFMDKYKPELNALLDLLLFRFTIFQNDPT
PGMRMQNLRFVNGRILGTSSSTFSSASDIHAPRVSQRLLLGLLYIGGKWG
FARLRRHALVAGWADEAQQQQHQQFHPAAVDPHIGGNGGSSDSSRGSTPL
HGEQWKRWAYRALDRAENLFRLAWLINFLVFLRVGRYPSLLQRLTGMRLV
YGDAFAGASRSINFQFMNRQLLWEHFTQLALCVVPLIDWDGLRRQVSGLI
RQRRLGAGAAGSADGGASIPGAGGADGDMECVMCGEGEAQTPYVTDCGHV
YCYYCLKTACLQDDAFACPRCGTFFATSKRWVPGQ*
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mRNA from alignment at chr10:462773..464080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01630.1 ID=NO10G01630.1|Name=NO10G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at chr10:462773..464080- (Nannochloropsis oceanica)
ATGGCGTCAACCGGCCCCTCCTCGGCCTCTTCGACTTCATCACCACTGCC
GCCCCCACTAGTGCCCCCAACGGTACCATCCCTGTCTGAAAATGCCTCCG
TCGTGCCCTTGGATCCCTTGCGTGCACCCGTGGAGCTGCAGCGATACTAC
CCCGACGCGACAGCAGCAGCAGCAGCAGCAGCAGCCGGGTCATCGTCCTC
CTTGCTACGTCTCATATCAGGCACGAGAGGCGCCGCGGGGGCAATGTCAG
GAAGTGGTGTGATGAAGGTGAATCAAATGGATGCTCAAGTACTTGATACG
GAGCTGCTTGATTTGCTGCGAATTCAATTAGGCACAATTTTGGCCCCGCC
CTTCTTCCCACCCGGGTTCATGGACAAGTATAAGCCCGAGCTCAATGCCC
TCTTGGATCTTCTCCTCTTCCGCTTCACCATATTTCAAAACGATCCCACG
CCCGGGATGCGCATGCAAAACCTTCGTTTCGTCAATGGGCGCATCCTTGG
CACTTCCTCCTCCACTTTCTCGTCTGCATCTGACATTCATGCCCCACGAG
TGAGCCAGCGTCTGTTGTTGGGTCTGTTGTACATTGGAGGTAAATGGGGA
TTTGCCCGACTGCGACGACATGCCCTCGTGGCAGGATGGGCGGATGAAGC
TCAGCAGCAACAACATCAACAATTCCATCCAGCTGCAGTAGATCCACATA
TCGGTGGGAATGGTGGCAGCAGCGACAGCAGCCGCGGGAGCACTCCTTTA
CATGGCGAGCAATGGAAGCGCTGGGCCTACCGTGCATTGGACCGAGCCGA
AAACCTCTTCCGCCTTGCATGGCTTATCAATTTCCTGGTGTTCTTGCGTG
TGGGTCGTTATCCTTCTTTATTGCAACGACTGACGGGGATGCGACTGGTG
TATGGGGATGCCTTTGCGGGGGCGAGCCGAAGTATTAATTTCCAGTTTAT
GAACAGGCAGTTGCTGTGGGAGCACTTCACGCAGCTGGCTTTGTGTGTGG
TACCCTTGATAGATTGGGACGGATTAAGAAGGCAAGTGTCAGGTCTGATC
AGACAGAGGAGGTTGGGGGCGGGAGCGGCGGGTTCGGCGGATGGAGGGGC
GAGCATACCGGGGGCCGGCGGGGCGGATGGGGATATGGAGTGTGTGATGT
GCGGGGAGGGGGAGGCACAGACACCTTATGTCACGGATTGTGGGCATGTG
TATTGTTACTACTGCTTGAAGACAGCGTGTTTGCAGGATGATGCTTTTGC
GTGTCCGCGGTGCGGGACGTTTTTTGCGACGTCGAAACGGTGGGTCCCTG
GGCAGTAG
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Coding sequence (CDS) from alignment at chr10:462773..464080-

>NO10G01630.1 ID=NO10G01630.1|Name=NO10G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr10:462773..464080- (Nannochloropsis oceanica)
ATGGCGTCAACCGGCCCCTCCTCGGCCTCTTCGACTTCATCACCACTGCC
GCCCCCACTAGTGCCCCCAACGGTACCATCCCTGTCTGAAAATGCCTCCG
TCGTGCCCTTGGATCCCTTGCGTGCACCCGTGGAGCTGCAGCGATACTAC
CCCGACGCGACAGCAGCAGCAGCAGCAGCAGCAGCCGGGTCATCGTCCTC
CTTGCTACGTCTCATATCAGGCACGAGAGGCGCCGCGGGGGCAATGTCAG
GAAGTGGTGTGATGAAGGTGAATCAAATGGATGCTCAAGTACTTGATACG
GAGCTGCTTGATTTGCTGCGAATTCAATTAGGCACAATTTTGGCCCCGCC
CTTCTTCCCACCCGGGTTCATGGACAAGTATAAGCCCGAGCTCAATGCCC
TCTTGGATCTTCTCCTCTTCCGCTTCACCATATTTCAAAACGATCCCACG
CCCGGGATGCGCATGCAAAACCTTCGTTTCGTCAATGGGCGCATCCTTGG
CACTTCCTCCTCCACTTTCTCGTCTGCATCTGACATTCATGCCCCACGAG
TGAGCCAGCGTCTGTTGTTGGGTCTGTTGTACATTGGAGGTAAATGGGGA
TTTGCCCGACTGCGACGACATGCCCTCGTGGCAGGATGGGCGGATGAAGC
TCAGCAGCAACAACATCAACAATTCCATCCAGCTGCAGTAGATCCACATA
TCGGTGGGAATGGTGGCAGCAGCGACAGCAGCCGCGGGAGCACTCCTTTA
CATGGCGAGCAATGGAAGCGCTGGGCCTACCGTGCATTGGACCGAGCCGA
AAACCTCTTCCGCCTTGCATGGCTTATCAATTTCCTGGTGTTCTTGCGTG
TGGGTCGTTATCCTTCTTTATTGCAACGACTGACGGGGATGCGACTGGTG
TATGGGGATGCCTTTGCGGGGGCGAGCCGAAGTATTAATTTCCAGTTTAT
GAACAGGCAGTTGCTGTGGGAGCACTTCACGCAGCTGGCTTTGTGTGTGG
TACCCTTGATAGATTGGGACGGATTAAGAAGGCAAGTGTCAGGTCTGATC
AGACAGAGGAGGTTGGGGGCGGGAGCGGCGGGTTCGGCGGATGGAGGGGC
GAGCATACCGGGGGCCGGCGGGGCGGATGGGGATATGGAGTGTGTGATGT
GCGGGGAGGGGGAGGCACAGACACCTTATGTCACGGATTGTGGGCATGTG
TATTGTTACTACTGCTTGAAGACAGCGTGTTTGCAGGATGATGCTTTTGC
GTGTCCGCGGTGCGGGACGTTTTTTGCGACGTCGAAACGGTGGGTCCCTG
GGCAGTAG
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Synonyms
Publications