NO10G01540.1, NO10G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01540.1
Unique NameNO10G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1915
Alignment locationchr10:441269..443280 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:441269..443280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01540.1 vs.
Match: EWM25398.1 (ccaat-binding factor complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 151.4 bits (381), Expect = 7.500e-33
Identity = 139/337 (41.25%), Postives = 184/337 (54.60%), Query Frame = 0 
Query:   12 PIPPASRASSCSV----------SPPRGSALRESHMFASSGTTISTTTTNGNGLSSTAALMAYKAYEVEAEDAGMGSGIQGLQSSSVITPLVASLTSPVQHQDHQQQQPQAHQQQQQQQAYQYHYQFPPYSSQQQHQQYQQYQQQQLRQPPPQYQQQQHHQQHQQQQQQHQHQPSFQHYQQQQL---PLPPQQQQEPSPDPTSDSMQ--YMKPDQLVENLVEQFWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            P+P +S +S C             P   S+ +  H   +  T +S   + G+ L     + A +       D G  SG   +    +          P+Q Q    Q  Q  Q QQQ  A Q   Q  P+  +   Q    +    LRQ P  Y  QQ  Q+HQQQ Q  Q Q   Q  QQQQ    PLPP    +   +  S+ ++    +P+  +E++V++ W SE  +I  I+PS TD +LQELPLARVKKVMKQD+E+ G  + L+SMEAL+IMAKACELF+ ELTLRGW MT+ N RRTLQR+ LAQA+IKC++FDFLIDIVPRDQA+P  R
Sbjct:  144 PLPNSSPSSRCHELSGDHEQQDGRPEHPSSSQLHHYHHAMRTHLSQQDSQGHHLHQQR-IQAPEQRPQHQHDHGNASGQHSIYHQQL----------PLQMQQDDLQSSQL-QLQQQHHADQSKLQSHPHDQRHLQQLNHHHHGDPLRQFPLIYDSQQQRQRHQQQSQHQQPQQQQQQQQQQQQRPPPLPPPSPAQQLQERHSEDVEGANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVR 468
The following BLAST results are available for this feature:
BLAST of NO10G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25398.17.500e-3341.25ccaat-binding factor complex subunit [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01540NO10G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01540.1NO10G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01540.1.cds1NO10G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01540.1.cds2NO10G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01540.1 ID=NO10G01540.1|Name=NO10G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp
ATGTCGGAATGCAACCATGCCACTGTAACCGCGCCGATCCCGCCTGCTTC
AAGGGCGTCATCATGCTCCGTTTCTCCACCGCGAGGCAGCGCCCTGCGGG
AATCCCACATGTTTGCCTCCAGCGGCACCACCATTTCCACAACTACAACC
AACGGGAACGGCCTCTCCTCCACCGCCGCGTTAATGGCCTATAAAGCCTA
TGAGGTGGAGGCCGAGGATGCAGGCATGGGCAGCGGTATTCAAGGGCTCC
AGTCCTCTTCCGTAATTACCCCTCTCGTGGCCAGTTTAACCTCTCCCGTG
CAGCACCAGGACCACCAACAGCAGCAGCCGCAGGCGCATCAACAACAACA
GCAACAGCAAGCATATCAATACCACTACCAGTTTCCGCCTTACTCATCCC
AACAACAGCATCAGCAGTATCAGCAGTATCAGCAGCAGCAGCTACGACAA
CCTCCTCCACAATACCAGCAGCAACAGCACCATCAACAGCACCAACAACA
GCAGCAGCAACACCAACATCAACCATCCTTTCAGCACTATCAGCAGCAGC
AGTTACCACTTCCACCGCAGCAGCAACAGGAGCCGTCGCCAGACCCTACC
TCAGATTCAATGCAGTACATGAAGCCCGACCAACTAGTAGAAAACCTTGT
CGAACAATTCTGGGCCTCCGAGGCCACCAGAATCCGCCAAATTGACCCCT
CGGCCACGGATCTCCGCCTGCAAGAGCTGCCCCTCGCCCGGGTGAAGAAA
GTCATGAAACAAGACGAAGAAGTGCATGGGTCCCCTAAAGTCCTTATCAG
CATGGAAGCCTTAGTAATAATGGCCAAAGCATGTGAGCTCTTTCTGTTGG
AACTTACTTTAAGAGGATGGCAGATGACAAAGCATAATGCCCGGCGGACC
CTGCAAAGAGTAGATTTGGCCCAAGCAATCATAAAGTGCGATGTGTTTGA
TTTTTTGATTGATATTGTCCCGAGGGATCAGGCCATTCCCACGACACGGG
CTTACACCAGGCATGCCCCTGCAATTGATGCTGTAGCTATTGCTACTGAT
GATGACATAGGGGCAGAAGCGGATGGGAAAGAGGAAGTGGGGGGAAAAGG
GAGGGAGGGGAGAGTGGATGGTGGTGCTACTGCCAGTGGCACAGGGAGTG
GAATGTGGGATGGGGAGGGAGGAGGGGGGGCGGGGAGGGGAAGTTGTGGA
AAAGAGGGAGTAGAAAGTGGAGGAGGAGGAGGGGGGGGAAGAGGAGGACG
AGGAGGAGGAGGAGGAGGAGAAGGAAGAGGATGGGACGGAGAAGAGGAAG
GAGAGGAGGGGGGGAAGGAGGAGGAGGAGGAGGAGGACGGCGACGAGTTC
ATTGAGGAAGAGAAAGAGGTAAAGGGGAGTGGAACTGATTCTGCTTATGG
TAGGGATAGTGAAAAAAGAGGAGAAAGAAGGGGAGGGGGAGTGGTGGAAG
TAATAGAAGAGATTAGAATGCGGTAAGAAGAAAGGTGGAGAGATGGATGG
AGTGGAGAGGGAGGCATGTAGCACTGTGGGAGGCACAAGGGTAGGACGAT
GACATTGGCGATGACGACAATGACGACAGCAGAAGGTAGGAAAGACAAAT
AGACTATGCTATGACCAAATATGACAGACAGTAATGCGGGGAAGAGGAGA
GACGAAGGACTGAGATTGGAAACCAAAAAACAGTCTGGTCCAATACCAGG
TAGCGAAAGCTAGACGCTTGTCATGTCCAGAAGGGAAGGACAGAGGCCGT
TCTATCTACCTCACACAGCAGCATTTATACATGTAAACATACGCTTAGAA
ATTGGAAGTGAGAGGATCAGCGCCAGACGTAGTAATACCTTGATGATTAT
TAAATAAAGCGCACGTGCGTGAAAATAACGAAAGAAATACAAGGAATATT
ACTATAAGCTTATCG
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protein sequence of NO10G01540.1

>NO10G01540.1-protein ID=NO10G01540.1-protein|Name=NO10G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MSECNHATVTAPIPPASRASSCSVSPPRGSALRESHMFASSGTTISTTTT
NGNGLSSTAALMAYKAYEVEAEDAGMGSGIQGLQSSSVITPLVASLTSPV
QHQDHQQQQPQAHQQQQQQQAYQYHYQFPPYSSQQQHQQYQQYQQQQLRQ
PPPQYQQQQHHQQHQQQQQQHQHQPSFQHYQQQQLPLPPQQQQEPSPDPT
SDSMQYMKPDQLVENLVEQFWASEATRIRQIDPSATDLRLQELPLARVKK
VMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRT
LQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTRAYTRHAPAIDAVAIATD
DDIGAEADGKEEVGGKGREGRVDGGATASGTGSGMWDGEGGGGAGRGSCG
KEGVESGGGGGGGRGGRGGGGGGEGRGWDGEEEGEEGGKEEEEEEDGDEF
IEEEKEVKGSGTDSAYGRDSEKRGERRGGGVVEVIEEIRMR*
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mRNA from alignment at chr10:441269..443280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01540.1 ID=NO10G01540.1|Name=NO10G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at chr10:441269..443280+ (Nannochloropsis oceanica)
ATGTCGGAATGCAACCATGCCACTGTAACCGCGCCGATCCCGCCTGCTTC
AAGGGCGTCATCATGCTCCGTTTCTCCACCGCGAGGCAGCGCCCTGCGGG
AATCCCACATGTTTGCCTCCAGCGGCACCACCATTTCCACAACTACAACC
AACGGGAACGGCCTCTCCTCCACCGCCGCGTTAATGGCCTATAAAGCCTA
TGAGGTGGAGGCCGAGGATGCAGGCATGGGCAGCGGTATTCAAGGGCTCC
AGTCCTCTTCCGTAATTACCCCTCTCGTGGCCAGTTTAACCTCTCCCGTG
CAGCACCAGGACCACCAACAGCAGCAGCCGCAGGCGCATCAACAACAACA
GCAACAGCAAGCATATCAATACCACTACCAGTTTCCGCCTTACTCATCCC
AACAACAGCATCAGCAGTATCAGCAGTATCAGCAGCAGCAGCTACGACAA
CCTCCTCCACAATACCAGCAGCAACAGCACCATCAACAGCACCAACAACA
GCAGCAGCAACACCAACATCAACCATCCTTTCAGCACTATCAGCAGCAGC
AGTTACCACTTCCACCGCAGCAGCAACAGGAGCCGTCGCCAGACCCTACC
TCAGATTCAATGCAGTACATGAAGCCCGACCAACTAGTAGGTAGGTCAGT
TCACCCACTAAAATCTATTTATTTTTCTCTTTCCTTATTTTTGCATCCTC
GATAATTACCTACAATTTTTATTGCTGTTACGAATAGAAAACCTTGTCGA
ACAATTCTGGGCCTCCGAGGCCACCAGAATCCGCCAAATTGACCCCTCGG
CCACGGATCTCCGCCTGCAAGAGCTGCCCCTCGCCCGGGTGAAGAAAGTC
ATGAAACAAGACGAAGAAGTGCATGGGTCCCCTAAAGTCCTTATCAGCAT
GGAAGCCTTAGTAATAATGGCCAAAGCATGTGAGCTCTTTCTGTTGGAAC
TTACTTTAAGAGGATGGCAGATGACAAAGCATAATGCCCGGCGGACCCTG
CAAAGAGTAGATTTGGCCCAAGCAATCATAAAGTGCGATGTGTTTGATTT
TTTGATTGATATTGTCCCGAGGGATCAGGCCATTCCCACGACACGGGCTT
ACACCAGGCATGCCCCTGCAATTGATGCTGTAGCTATTGCTACTGATGAT
GACATAGGGGCAGAAGCGGATGGGAAAGAGGAAGTGGGGGGAAAAGGGAG
GGAGGGGAGAGTGGATGGTGGTGCTACTGCCAGTGGCACAGGGAGTGGAA
TGTGGGATGGGGAGGGAGGAGGGGGGGCGGGGAGGGGAAGTTGTGGAAAA
GAGGGAGTAGAAAGTGGAGGAGGAGGAGGGGGGGGAAGAGGAGGACGAGG
AGGAGGAGGAGGAGGAGAAGGAAGAGGATGGGACGGAGAAGAGGAAGGAG
AGGAGGGGGGGAAGGAGGAGGAGGAGGAGGAGGACGGCGACGAGTTCATT
GAGGAAGAGAAAGAGGTAAAGGGGAGTGGAACTGATTCTGCTTATGGTAG
GGATAGTGAAAAAAGAGGAGAAAGAAGGGGAGGGGGAGTGGTGGAAGTAA
TAGAAGAGATTAGAATGCGGTAAGAAGAAAGGTGGAGAGATGGATGGAGT
GGAGAGGGAGGCATGTAGCACTGTGGGAGGCACAAGGGTAGGACGATGAC
ATTGGCGATGACGACAATGACGACAGCAGAAGGTAGGAAAGACAAATAGA
CTATGCTATGACCAAATATGACAGACAGTAATGCGGGGAAGAGGAGAGAC
GAAGGACTGAGATTGGAAACCAAAAAACAGTCTGGTCCAATACCAGGTAG
CGAAAGCTAGACGCTTGTCATGTCCAGAAGGGAAGGACAGAGGCCGTTCT
ATCTACCTCACACAGCAGCATTTATACATGTAAACATACGCTTAGAAATT
GGAAGTGAGAGGATCAGCGCCAGACGTAGTAATACCTTGATGATTATTAA
ATAAAGCGCACGTGCGTGAAAATAACGAAAGAAATACAAGGAATATTACT
ATAAGCTTATCG
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Coding sequence (CDS) from alignment at chr10:441269..443280+

>NO10G01540.1 ID=NO10G01540.1|Name=NO10G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr10:441269..443280+ (Nannochloropsis oceanica)
ATGTCGGAATGCAACCATGCCACTGTAACCGCGCCGATCCCGCCTGCTTC
AAGGGCGTCATCATGCTCCGTTTCTCCACCGCGAGGCAGCGCCCTGCGGG
AATCCCACATGTTTGCCTCCAGCGGCACCACCATTTCCACAACTACAACC
AACGGGAACGGCCTCTCCTCCACCGCCGCGTTAATGGCCTATAAAGCCTA
TGAGGTGGAGGCCGAGGATGCAGGCATGGGCAGCGGTATTCAAGGGCTCC
AGTCCTCTTCCGTAATTACCCCTCTCGTGGCCAGTTTAACCTCTCCCGTG
CAGCACCAGGACCACCAACAGCAGCAGCCGCAGGCGCATCAACAACAACA
GCAACAGCAAGCATATCAATACCACTACCAGTTTCCGCCTTACTCATCCC
AACAACAGCATCAGCAGTATCAGCAGTATCAGCAGCAGCAGCTACGACAA
CCTCCTCCACAATACCAGCAGCAACAGCACCATCAACAGCACCAACAACA
GCAGCAGCAACACCAACATCAACCATCCTTTCAGCACTATCAGCAGCAGC
AGTTACCACTTCCACCGCAGCAGCAACAGGAGCCGTCGCCAGACCCTACC
TCAGATTCAATGCAGTACATGAAGCCCGACCAACTAGTAGAAAACCTTGT
CGAACAATTCTGGGCCTCCGAGGCCACCAGAATCCGCCAAATTGACCCCT
CGGCCACGGATCTCCGCCTGCAAGAGCTGCCCCTCGCCCGGGTGAAGAAA
GTCATGAAACAAGACGAAGAAGTGCATGGGTCCCCTAAAGTCCTTATCAG
CATGGAAGCCTTAGTAATAATGGCCAAAGCATGTGAGCTCTTTCTGTTGG
AACTTACTTTAAGAGGATGGCAGATGACAAAGCATAATGCCCGGCGGACC
CTGCAAAGAGTAGATTTGGCCCAAGCAATCATAAAGTGCGATGTGTTTGA
TTTTTTGATTGATATTGTCCCGAGGGATCAGGCCATTCCCACGACACGGG
CTTACACCAGGCATGCCCCTGCAATTGATGCTGTAGCTATTGCTACTGAT
GATGACATAGGGGCAGAAGCGGATGGGAAAGAGGAAGTGGGGGGAAAAGG
GAGGGAGGGGAGAGTGGATGGTGGTGCTACTGCCAGTGGCACAGGGAGTG
GAATGTGGGATGGGGAGGGAGGAGGGGGGGCGGGGAGGGGAAGTTGTGGA
AAAGAGGGAGTAGAAAGTGGAGGAGGAGGAGGGGGGGGAAGAGGAGGACG
AGGAGGAGGAGGAGGAGGAGAAGGAAGAGGATGGGACGGAGAAGAGGAAG
GAGAGGAGGGGGGGAAGGAGGAGGAGGAGGAGGAGGACGGCGACGAGTTC
ATTGAGGAAGAGAAAGAGGTAAAGGGGAGTGGAACTGATTCTGCTTATGG
TAGGGATAGTGAAAAAAGAGGAGAAAGAAGGGGAGGGGGAGTGGTGGAAG
TAATAGAAGAGATTAGAATGCGGTAA
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Synonyms
Publications