NO10G01480.3, NO10G01480.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G01480.3
Unique Name	NO10G01480.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4536
Alignment location	chr10:427271..432913 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:427271..432913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO10G01480.3 vs.
Match: EWM25448.1 (receptor mediated endocytosis family member (rme-1) [Nannochloropsis gaditana])

HSP 1 Score: 718.0 bits (1852), Expect = 2.700e-203
Identity = 372/435 (85.52%), Postives = 382/435 (87.82%), Query Frame = 0

Query:  228 YYTGGDQPLPGFSGPPHPPSSSSLAPSCPDADLEASLLTHPPTPSALPSSSTCGPSSASPPPFEGNEDVKAPWHGADLSVLDKEQFFDELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQHDFPGQRVGPEPTTDRFMAVMHGPEARLVPGHALAMQADKPFRGVAAFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRVVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRYLLEKEKADLLGELGGLPHNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR 663
            Y+T  D  L  F   P  P  S +       + EASLL   P P+A P     GPS             + PW  ADL+VLDKEQFF+ELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQ DFPGQRVGPEPTTDRFMAVMHGPE RLVPGHALAMQADKPFRGVA+FGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELR+VMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNR+LLEKEKADLL EL GLP NAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR
Sbjct:    5 YFTSSDTALTRFFSAP-APCRSIVRERASAPEPEASLLASRPPPTAPP-----GPS-------------EPPWQAADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR 420

The following BLAST results are available for this feature:

BLAST of NO10G01480.3 vs.

BLAST of NO10G01480.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25448.1	2.700e-203	85.52	receptor mediated endocytosis family member (rme-1...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G01480	NO10G01480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G01480.3	NO10G01480.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G01480.3.cds1	NO10G01480.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01480.3.cds2	NO10G01480.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01480.3.cds3	NO10G01480.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01480.3.cds4	NO10G01480.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01480.3.cds5	NO10G01480.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:427271..432913+
coding sequence from alignment at chr10:427271..432913+

mRNA sequence

>NO10G01480.3 ID=NO10G01480.3|Name=NO10G01480.3|organism=Nannochloropsis oceanica|type=mRNA|length=4536bp
ATAAGAGAGATGAGTATAGCAAGCAGGCAGCCTGAGGGCCTTGCTAGAAT
CCCGAAGGGACTCATTCGCGGCGGTTGTTGCCGTGGCGGCGAGTCCTACT
CGCTTGTGGTTGCCCTTTGACTTCATGACTTCACTATCCCGTCAAGATCC
CTACCTTAACGCACAAACTTCACGCAATAAATACCTATCGCACACAAGCA
CAGAGCCAGTCACCGTTCTTGTCGTCCCCACATGTCCCACGTCCAGCAAA
TTTAGCCCCCTCCCGAGACTCCGAAGACAAGACGCGTTGAGGAGTGCCGC
CCTCCCTCCACACCATGCAGACACATGCGATGGCCTCTGATGCTGTCGTC
CCTAAGGCCCGGCCACGCATAAAAAGGATGAGGCAAAGAGGGCAAGGAAC
GGCAGCTGCAGTAACCGGGTTGTTCATTCCTGCCGTCGGCCTCCTCGCCT
TGGTTGGGGGATGTTCTAGCAGCGGCATGGTCGTGGCGGCGGTGGGCAGT
GGGGGAGTGGCGTCCTGGGGAGGAGATGGCAATGCAGGGGGATGGCGACC
CTTACCTTCGGCTCCATACACAGCTGCTTCGGATAGCTATCCTCCTTACC
CCACCAGTGGTAGCGGAAAAGAAGGGAGAGGACGAGGGGGGGGGGGGCAA
CTAGGAGGGGCACACAAAGGCAGTGGCAGCAGCGAGTACAGCAGCAGCGG
CAAGAGCGGGAGAGGAGGGGATAGAGGGGATAGAGCACCACAACCTTCGC
ATTCTCACCCACCACCACCATCACGACAGCGACATTACCCGCACAACCGA
CCCTATCAGCAGCAGCAGCCTCCCTCGCACTTGCACCCACAGCGTCAGCA
GCATCCACTGCAGCCACCAGCCTCCAAGCAACGTCCACAACAGGAGGACC
ACCACCAAGGAGGGCGGGGGGGAGGGAGGGAAGGACAATCTTGGGAGGGA
GGGAGTGATGCAGGGGCACCAACTCCCCCCTCTCCTTCAGACGACTACTA
TACAGGAGGCGACCAACCGCTGCCTGGCTTTTCTGGTCCTCCACATCCTC
CTTCCTCTTCCTCGCTCGCTCCCTCCTGCCCGGACGCCGACCTCGAAGCC
TCCCTCCTTACCCACCCTCCTACCCCATCCGCTCTCCCTTCCTCCTCTAC
CTGTGGCCCCTCTTCTGCATCTCCCCCTCCTTTCGAAGGAAACGAGGACG
TGAAGGCCCCCTGGCATGGAGCCGACCTCTCCGTCCTCGACAAAGAACAG
TTTTTTGATGAATTAAAACGACTTTATCGGAAGAAAGTGCTGCCCTTGGA
ACTTGCCAGTAAATACGCGCAGTTTCATTCCGCGCCGTTGAACCCTGCGG
ATTTTGAAGCCAAGCCGATGGTGTTGTTGTTAGGCCAGTATTCCGTCGGG
AAGACCTCCTTCATCCGCTCCCTCCTGCAACACGACTTCCCCGGCCAGCG
TGTCGGCCCAGAGCCAACCACAGATCGATTTATGGCAGTCATGCATGGGC
CAGAAGCACGGCTGGTCCCAGGCCACGCCCTGGCGATGCAGGCGGATAAG
CCCTTTCGGGGGGTGGCGGCTTTTGGGAACAATTTCTTGACGAAATTCGA
GGCCGCGGAAGTCCCGGCGCCGATTTTAAGAAATATCACGTTGATCGACT
CGCCGGGGATTTTGTCGGGGGAGAAGCAGCGCTTGGGCCGAGATTATGAC
TACCAGGCTGTCATCCAATGGTTCGCTGACCGGGCCGACCTTATCATCAT
CATGTTCGACGCCCACAAGCTCGATATTTCCGACGAGCTCCGCGTCGTGA
TGGATGCCCTCCGCATCCACCAAGACAAAATACGGATCTTGCTCAACAAA
GCCGACCAAATCGACTCCCAACAACTCATGCGTATCTACGGTGCCCTCAT
GTGGTCCCTTGGAAAGGTGGTCAACACCCCCGAGGTCTGTCGCGTGTACA
TCGGCTCATTCTGGGAACATCCGCTGAAGCACTCCCAAAACCGCTATCTA
CTCGAAAAGGAAAAGGCGGATTTGTTGGGGGAGCTTGGTGGATTACCCCA
CAACGCCGTAGTGAGGCGAATCAATGAACTGGTCAAACGCGCGAGGTCCG
TCAAGGTGCACGCGTATTTGATCCACTATCTCCGAAAGCAAGTCCCGACC
GTGTTTGGAAAAAGTGAGAAACAAGCCAAGTTGCTCCAGACACTACCCAG
AGAGTTTGTGGCTTGTGCTCGACGGTATGGCTTGCCCCTAGGGGATTTCC
CTGATATCAATAAGTTTCGGGCACGTTTGGGGGAGGTGAAGGATTTGAGG
TAGGAGGGGAAAGGCGGGGGGGAGGAGGGAATGATTTTCGCATTCCAACC
CAGGTACATTCACTCATACCCTCCCTCCTTCCCTTACTCCATTTTTTACA
GGAAGTTTCCTAAATTAGACAAAGCGATGGTGTATGAAATGGACCGCGTC
TTTTCTCACGACATTCCCAAGCTGTTAGAGAAGGCGAGTCGCCGGCCGGA
ACATGGGGAGGGTGCGTGGGAGGGAGGATCTGATCCTTATAGACGGGGGG
GGCGACGGTGAGGAAAGAGAGAGAGCCTTCCCCTCTGGTGTGTGTACAAA
TTAAAATTTTGATCGTATCCCTAATCCAGGTAAATTAACTATAAAGATCT
GACGAATGAAGAGTTAAAAGGAAGAGACGACATTTTGTGTCCTCTCCTTC
CCGGTGACGGGAGTAACGGCAAGGGAAGCATTAAATGCGCCACAACAAAA
GCAAAGCAAACACGAAGGGATATGAGAATATGAAGGAGAAACGAATACAG
AATTGATTTCACACACGCAAACCACAGTCCAGCAGGACGGATGACGTTTT
CCGGACTGTCACTTTCAATTTTCTCCCCGTGTTCTCTCTTGCCATTTTTG
TGTTTCATGACAACTCTCGGATGCATTCGCACAATGCCCCTGTAGTAGAA
TTCCCCCTTCGTGTTGTCTCACCTGATCTTCCTGGGACTTTAAATTATTT
TCCTTTTTCGTCCTTTCGGTGCCGTGCGTTCTTGCTTCTTCTTTCCTTTT
TTTTCCTTCCCTCCTTTCCATCCCCCCCCTAATTACTTTTTCTTCTGTCC
GGTTATCACCCCAAACTTAATCAATCCTACCGAGTACCCCACCATCATGT
ACAATATCGCCAACGCCCCCTTCCGTACCGTCTCGCTGGTGAACAGCACC
TTGATACTTTTCCAATTCAAGCAACTCACGAGCACTGCCGGCCAAAACGG
CTTCACGACCTGAGTCCAATCCGCCGTCTTAATTCCCTCTAACCCCTCCT
CCTCCGCCAGAGCCACGTACCTATTCATACTGACCCACGGCGGCAAAAAA
TAAATCGAATTGATCAATTTGAGCAACCCCCTCTCAAATCTCGTCAATTT
CTCCCCGTCTTTTAAATTGCGATGACACCAAGTCACTACGACAATTCTTC
CCCCGGGCGCCGCCACCCGGACCAATTCTCTCATGAACTGCTTCTTATCC
GGCATATGCTCCCCACTCTCCATACTCCACACCAAATCAAACGTCTCTTT
TTGGAAAGGCATCGCCAGAGCATCCGCTACCGAAAATTTCGCCTTATCTT
CTAACCCGGCCTTCTGCGTCAAAAACTGCGCTCGTCGACATTGAAACGGA
CTCAATGTGATCCCCCTAACCTGAGCTCCGTACTTTGTCGCCAAAAATCG
GGACGACCCTCCAATTCCGCACCCCACATCCACCGCCCGCTTCACCCCGC
TGGTTGTCACATCGCCCACCCCTGCAAACTTCAGGGACTCTTCAATCATG
TCAACTTGCGCTTTCTGATGATTCTTCTCCTTGCCTGTGTAGTAATAGCC
GTGGTGCAAATGCTCTCCCCATACCTCTTCCCAAATGGCAGTGGACTCGT
CATAAAAGGTCGCGATCCCGTCTTTAAGCTCTGTGCCCACGCCAAAGTCA
CGGTACTTGAGGGGGTTCAGCTTGTCGAAGAAATGGGAGAAGCCTTTCCT
TTTGGGGGGGCTTGGGGAGGACGAGGCGGAGGAAGAGAGGGGCGTGTTGG
AAGTGAACGACGCTGGACATGATGACGAGGAGGGTGGCGAAGAGGAGGAG
ACCTGTTGGGGGTTGCCACTGCCACGGCTGCTGCTGCCAAACAAAGGGCT
GGTCGGCTTGGGGGAAGGTGTGGAGAATGCCTGGGTCAAGGCCATGCTTC
CGACGAGGACGACGGTAGTGGTCAACTTCATAGTATGTTTTTCGAAATTT
CCTTGTAGCGCCTAGAGCCGAGGCGGACGTGCGGGCGGTGAAAAATGCGT
CGAAGCTTTGTCTGAGTGTGGGGACGGGGGCCGGGGCAGCCTGCCAGTGA
GGAGGGGAGCGGATGAGTTCTGCTACTATAGAAAATTATGCCTGGAGCCT
GCCGTCAATACGATGATGAGACTAAAATCATCTGCTCGTTCTCCTACGCT
TACTGTGCATGTTGTTAGAGTGGTTGCCTTTAGACGGACTGGGCGCGCAC
ACGGCCAGAGATATCGCCGACAAGAGCGAGTCATCT

protein sequence of NO10G01480.3

>NO10G01480.3-protein ID=NO10G01480.3-protein|Name=NO10G01480.3|organism=Nannochloropsis oceanica|type=polypeptide|length=663bp
MQTHAMASDAVVPKARPRIKRMRQRGQGTAAAVTGLFIPAVGLLALVGGC
SSSGMVVAAVGSGGVASWGGDGNAGGWRPLPSAPYTAASDSYPPYPTSGS
GKEGRGRGGGGQLGGAHKGSGSSEYSSSGKSGRGGDRGDRAPQPSHSHPP
PPSRQRHYPHNRPYQQQQPPSHLHPQRQQHPLQPPASKQRPQQEDHHQGG
RGGGREGQSWEGGSDAGAPTPPSPSDDYYTGGDQPLPGFSGPPHPPSSSS
LAPSCPDADLEASLLTHPPTPSALPSSSTCGPSSASPPPFEGNEDVKAPW
HGADLSVLDKEQFFDELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAK
PMVLLLGQYSVGKTSFIRSLLQHDFPGQRVGPEPTTDRFMAVMHGPEARL
VPGHALAMQADKPFRGVAAFGNNFLTKFEAAEVPAPILRNITLIDSPGIL
SGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRVVMDALR
IHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFW
EHPLKHSQNRYLLEKEKADLLGELGGLPHNAVVRRINELVKRARSVKVHA
YLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINK
FRARLGEVKDLR*

mRNA from alignment at chr10:427271..432913+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G01480.3 ID=NO10G01480.3|Name=NO10G01480.3|organism=Nannochloropsis oceanica|type=mRNA|length=5643bp|location=Sequence derived from alignment at chr10:427271..432913+ (Nannochloropsis oceanica)
ATAAGAGAGATGAGTATAGCAAGCAGGCAGCCTGAGGGCCTTGCTAGAAT
CCCGAAGGGACTCATTCGCGGCGGTTGTTGCCGTGGCGGCGAGTCCTACT
CGCTTGTGGTTGCCCTTTGACTTCATGACTTCACTATCCCGTCAAGATCC
CTACCTTAACGCACAAACTTCACGCAATAAATACCTATCGCACACAAGCA
CAGAGCCAGTCACCGTTCTTGTCGTCCCCACATGTCCCACGTCCAGCAAA
TTTAGCCCCCTCCCGAGACTCCGAAGACAAGACGCGTTGAGGAGTGCCGC
CCTCCCTCCACACCATGCAGACACATGCGATGGCCTCTGATGCTGTCGTC
CCTAAGGCCCGGCCACGCATAAAAAGGATGAGGCAAAGAGGGCAAGGAAC
GGCAGCTGCAGTAACCGGGTTGTTCATTCCTGCCGTCGGCCTCCTCGCCT
TGGTTGGGGGATGTTCTAGCAGCGGCATGGTCGTGGCGGCGGTGGGCAGT
GGGGGAGTGGCGTCCTGGGGAGGAGATGGCAATGCAGGGGTACGTGCAAC
TCTTTAAGTAGGATGATGTGTACATTTGAGATTGTACTCTGCCTGCACCT
GTAACTTCTCGTCTTCGACGAGCCAAACAAATGATGAAGAAACCTGAACA
TGACAAAAACACTGAAACAACTCTGTGATGTCTGAATCATTATTATTTCA
CCTCTTCTGATATTCGCTCAGGACAAAACGAGCCTTTTGTCTCCAACCCA
TGGGATGGAAAAACATGCCGGTGCTTCTTCCTTTGACCCCTCCTTCCCTC
CCTCTCTCGCTCCCCTTCTTCCTCCTTGTACAGGGATGGCGACCCTTACC
TTCGGCTCCATACACAGCTGCTTCGGATAGCTATCCTCCTTACCCCACCA
GTGGTAGCGGAAAAGAAGGGAGAGGACGAGGGGGGGGGGGGCAACTAGGA
GGGGCACACAAAGGCAGTGGCAGCAGCGAGTACAGCAGCAGCGGCAAGAG
CGGGAGAGGAGGGGATAGAGGGGATAGAGCACCACAACCTTCGCATTCTC
ACCCACCACCACCATCACGACAGCGACATTACCCGCACAACCGACCCTAT
CAGCAGCAGCAGCCTCCCTCGCACTTGCACCCACAGCGTCAGCAGCATCC
ACTGCAGCCACCAGCCTCCAAGCAACGTCCACAACAGGAGGACCACCACC
AAGGAGGGCGGGGGGGAGGGAGGGAAGGACAATCTTGGGAGGGAGGGAGT
GATGCAGGGGCACCAACTCCCCCCTCTCCTTCAGACGACTACTATACAGG
AGGCGACCAACCGCTGCCTGGCTTTTCTGGTCCTCCACATCCTCCTTCCT
CTTCCTCGCTCGCTCCCTCCTGCCCGGACGCCGACCTCGAAGCCTCCCTC
CTTACCCACCCTCCTACCCCATCCGCTCTCCCTTCCTCCTCTACCTGTGG
CCCCTCTTCTGCATCTCCCCCTCCTTTCGAAGGAAACGAGGACGTGAAGG
CCCCCTGGCATGGAGCCGACCTCTCCGTCCTCGACAAAGAACAGTTTTTT
GATGAATTAAAACGACTTTATCGGAAGAAAGTGCTGCCCTTGGAACTTGC
CAGTAAATACGCGCAGTTTCATTCCGCGCCGTTGAACCCTGCGGATTTTG
AAGCCAAGCCGATGGTGTTGTTGTTAGGTTCGTCTTCCTCCTTTCTTACC
TTCCTCCTTCCCTTCCTCCCTCCCACCCTCCCTACATCCTCTGAGAATCT
CCAAGGCTCATGGCTGTAACGTACATGCGCCCTATTCAAGATAATGAGAA
GGATATGATGGGAAACACTCTCTCCCACAGACGCAGACATGCACACAATT
ACACATGCATGCACGCACATGCATACCCACATTTTCTATACCCAACCACA
CCAACCAACAGGCCAGTATTCCGTCGGGAAGACCTCCTTCATCCGCTCCC
TCCTGCAACACGACTTCCCCGGCCAGCGTGTCGGCCCAGAGCCAACCACA
GATCGATTTATGGCAGTCATGCATGGGCCAGAAGCACGGCTGGTCCCAGG
CCACGCCCTGGCGATGCAGGCGGATAAGCCCTTTCGGGGGGTGGCGGCTT
TTGGGAACAATTTCTTGACGAAATTCGAGGCCGCGGAAGTCCCGGCGCCG
ATTTTAAGGTGAGGATCATGGGACGGAGAGTGGGACGGAGAGTGGACGGA
GGGAGAGGTCGAGGACGAGCGGAGGTAGGAAGCGGTGGAGGGGACAGAAA
GAGAGTGGTGTGGGTGTTTAGCTGCTGGACAGTTAGATGAGGAGCCAGGA
AGGAGGACTCACTCGCCGACTCGCTCGACCCGCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCCTGTTTGCAGAAATATCACGTTGATCGACTCGC
CGGGGATTTTGTCGGGGGAGAAGCAGCGCTTGGGCCGAGATTATGACTAC
CAGGTGAGCGGGGTTGAAGGAGGGAGGGCATGTACACACGTTGTATTTGA
TCTTGAGTGAATGAAAAAGGATTTTTTGTTTTTCAAGTACTCCATTTAGT
TTAATTTAAAATAAACAAACTCAACGTTTTCTGTCAAAATTCTTGGAATG
ATGAAACCCAATGCTGGCACCAATCTGAGTGCGTCGCCTCATTCGATGCC
CGATAATGAACAGCTACTTGGCTCCTACCGCAATTGCGAGTCTCTGACTA
AGGAACAATAATGTACGAAATCATGAGTTTAGAGTATAAATCAAAATTCT
CGGCTGAAACAATCATACCTTCCCTCCATCTTTCCTGTATCCCTCCCTCC
CTCGGGTCTCCAGGCTGTCATCCAATGGTTCGCTGACCGGGCCGACCTTA
TCATCATCATGTTCGACGCCCACAAGCTCGATATTTCCGACGAGCTCCGC
GTCGTGATGGATGCCCTCCGCATCCACCAAGACAAAATACGGATCTTGCT
CAACAAAGCCGACCAAATCGACTCCCAACAACTCATGCGTATCTACGGTG
CCCTCATGTGGTCCCTTGGAAAGGTGGTCAACACCCCCGAGGTCTGTCGC
GTGTACATCGGCTCATTCTGGGAACATCCGCTGAAGCACTCCCAAAACCG
CTATCTACTCGAAAAGGAAAAGGCGGATTTGTTGGGGGAGCTTGGTGGAT
TACCCCACAACGCCGTAGTGAGGCGAATCAATGAACTGGTCAAACGCGCG
AGGTCCGTCAAGGTGCACGCGTATTTGATCCACTATCTCCGAAAGCAAGT
CCCGACCGTGTTTGGAAAAAGTGAGAAACAAGCCAAGTTGCTCCAGACAC
TACCCAGAGAGTTTGTGGCTTGTGCTCGACGGTATGGCTTGCCCCTAGGG
GATTTCCCTGATATCAATAAGTTTCGGGCACGTTTGGGGGAGGTGAAGGA
TTTGAGGTAGGAGGGGAAAGGCGGGGGGGAGGAGGGAATGATTTTCGCAT
TCCAACCCAGGTACATTCACTCATACCCTCCCTCCTTCCCTTACTCCATT
TTTTACAGGAAGTTTCCTAAATTAGACAAAGCGATGGTGTATGAAATGGA
CCGCGTCTTTTCTCACGACATTCCCAAGCTGTTAGAGAAGGCGAGTCGCC
GGCCGGAACATGGGGAGGGTGCGTGGGAGGGAGGATCTGATCCTTATAGA
CGGGGGGGGCGACGGTGAGGAAAGAGAGAGAGCCTTCCCCTCTGGTGTGT
GTACAAATTAAAATTTTGATCGTATCCCTAATCCAGGTAAATTAACTATA
AAGATCTGACGAATGAAGAGTTAAAAGGAAGAGACGACATTTTGTGTCCT
CTCCTTCCCGGTGACGGGAGTAACGGCAAGGGAAGCATTAAATGCGCCAC
AACAAAAGCAAAGCAAACACGAAGGGATATGAGAATATGAAGGAGAAACG
AATACAGAATTGATTTCACACACGCAAACCACAGTCCAGCAGGACGGATG
ACGTTTTCCGGACTGTCACTTTCAATTTTCTCCCCGTGTTCTCTCTTGCC
ATTTTTGTGTTTCATGACAACTCTCGGATGCATTCGCACAATGCCCCTGT
AGTAGAATTCCCCCTTCGTGTTGTCTCACCTGATCTTCCTGGGACTTTAA
ATTATTTTCCTTTTTCGTCCTTTCGGTGCCGTGCGTTCTTGCTTCTTCTT
TCCTTTTTTTTCCTTCCCTCCTTTCCATCCCCCCCCTAATTACTTTTTCT
TCTGTCCGGTTATCACCCCAAACTTAATCAATCCTACCGAGTACCCCACC
ATCATGTACAATATCGCCAACGCCCCCTTCCGTACCGTCTCGCTGGTGAA
CAGCACCTTGATACTTTTCCAATTCAAGCAACTCACGAGCACTGCCGGCC
AAAACGGCTTCACGACCTGAGTCCAATCCGCCGTCTTAATTCCCTCTAAC
CCCTCCTCCTCCGCCAGAGCCACGTACCTATTCATACTGACCCACGGCGG
CAAAAAATAAATCGAATTGATCAATTTGAGCAACCCCCTCTCAAATCTCG
TCAATTTCTCCCCGTCTTTTAAATTGCGATGACACCAAGTCACTACGACA
ATTCTTCCCCCGGGCGCCGCCACCCGGACCAATTCTCTCATGAACTGCTT
CTTATCCGGCATATGCTCCCCACTCTCCATACTCCACACCAAATCAAACG
TCTCTTTTTGGAAAGGCATCGCCAGAGCATCCGCTACCGAAAATTTCGCC
TTATCTTCTAACCCGGCCTTCTGCGTCAAAAACTGCGCTCGTCGACATTG
AAACGGACTCAATGTGATCCCCCTAACCTGAGCTCCGTACTTTGTCGCCA
AAAATCGGGACGACCCTCCAATTCCGCACCCCACATCCACCGCCCGCTTC
ACCCCGCTGGTTGTCACATCGCCCACCCCTGCAAACTTCAGGGACTCTTC
AATCATGTCAACTTGCGCTTTCTGATGATTCTTCTCCTTGCCTGTGTAGT
AATAGCCGTGGTGCAAATGCTCTCCCCATACCTCTTCCCAAATGGCAGTG
GACTCGTCATAAAAGGTCGCGATCCCGTCTTTAAGCTCTGTGCCCACGCC
AAAGTCACGGTACTTGAGGGGGTTCAGCTTGTCGAAGAAATGGGAGAAGC
CTTTCCTTTTGGGGGGGCTTGGGGAGGACGAGGCGGAGGAAGAGAGGGGC
GTGTTGGAAGTGAACGACGCTGGACATGATGACGAGGAGGGTGGCGAAGA
GGAGGAGACCTGTTGGGGGTTGCCACTGCCACGGCTGCTGCTGCCAAACA
AAGGGCTGGTCGGCTTGGGGGAAGGTGTGGAGAATGCCTGGGTCAAGGCC
ATGCTTCCGACGAGGACGACGGTAGTGGTCAACTTCATAGTATGTTTTTC
GAAATTTCCTTGTAGCGCCTAGAGCCGAGGCGGACGTGCGGGCGGTGAAA
AATGCGTCGAAGCTTTGTCTGAGTGTGGGGACGGGGGCCGGGGCAGCCTG
CCAGTGAGGAGGGGAGCGGATGAGTTCTGCTACTATAGAAAATTATGCCT
GGAGCCTGCCGTCAATACGATGATGAGACTAAAATCATCTGCTCGTTCTC
CTACGCTTACTGTGCATGTTGTTAGAGTGGTTGCCTTTAGACGGACTGGG
CGCGCACACGGCCAGAGATATCGCCGACAAGAGCGAGTCATCT

Coding sequence (CDS) from alignment at chr10:427271..432913+

>NO10G01480.3 ID=NO10G01480.3|Name=NO10G01480.3|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at chr10:427271..432913+ (Nannochloropsis oceanica)
ATGCAGACACATGCGATGGCCTCTGATGCTGTCGTCCCTAAGGCCCGGCC
ACGCATAAAAAGGATGAGGCAAAGAGGGCAAGGAACGGCAGCTGCAGTAA
CCGGGTTGTTCATTCCTGCCGTCGGCCTCCTCGCCTTGGTTGGGGGATGT
TCTAGCAGCGGCATGGTCGTGGCGGCGGTGGGCAGTGGGGGAGTGGCGTC
CTGGGGAGGAGATGGCAATGCAGGGGGATGGCGACCCTTACCTTCGGCTC
CATACACAGCTGCTTCGGATAGCTATCCTCCTTACCCCACCAGTGGTAGC
GGAAAAGAAGGGAGAGGACGAGGGGGGGGGGGGCAACTAGGAGGGGCACA
CAAAGGCAGTGGCAGCAGCGAGTACAGCAGCAGCGGCAAGAGCGGGAGAG
GAGGGGATAGAGGGGATAGAGCACCACAACCTTCGCATTCTCACCCACCA
CCACCATCACGACAGCGACATTACCCGCACAACCGACCCTATCAGCAGCA
GCAGCCTCCCTCGCACTTGCACCCACAGCGTCAGCAGCATCCACTGCAGC
CACCAGCCTCCAAGCAACGTCCACAACAGGAGGACCACCACCAAGGAGGG
CGGGGGGGAGGGAGGGAAGGACAATCTTGGGAGGGAGGGAGTGATGCAGG
GGCACCAACTCCCCCCTCTCCTTCAGACGACTACTATACAGGAGGCGACC
AACCGCTGCCTGGCTTTTCTGGTCCTCCACATCCTCCTTCCTCTTCCTCG
CTCGCTCCCTCCTGCCCGGACGCCGACCTCGAAGCCTCCCTCCTTACCCA
CCCTCCTACCCCATCCGCTCTCCCTTCCTCCTCTACCTGTGGCCCCTCTT
CTGCATCTCCCCCTCCTTTCGAAGGAAACGAGGACGTGAAGGCCCCCTGG
CATGGAGCCGACCTCTCCGTCCTCGACAAAGAACAGTTTTTTGATGAATT
AAAACGACTTTATCGGAAGAAAGTGCTGCCCTTGGAACTTGCCAGTAAAT
ACGCGCAGTTTCATTCCGCGCCGTTGAACCCTGCGGATTTTGAAGCCAAG
CCGATGGTGTTGTTGTTAGGCCAGTATTCCGTCGGGAAGACCTCCTTCAT
CCGCTCCCTCCTGCAACACGACTTCCCCGGCCAGCGTGTCGGCCCAGAGC
CAACCACAGATCGATTTATGGCAGTCATGCATGGGCCAGAAGCACGGCTG
GTCCCAGGCCACGCCCTGGCGATGCAGGCGGATAAGCCCTTTCGGGGGGT
GGCGGCTTTTGGGAACAATTTCTTGACGAAATTCGAGGCCGCGGAAGTCC
CGGCGCCGATTTTAAGAAATATCACGTTGATCGACTCGCCGGGGATTTTG
TCGGGGGAGAAGCAGCGCTTGGGCCGAGATTATGACTACCAGGCTGTCAT
CCAATGGTTCGCTGACCGGGCCGACCTTATCATCATCATGTTCGACGCCC
ACAAGCTCGATATTTCCGACGAGCTCCGCGTCGTGATGGATGCCCTCCGC
ATCCACCAAGACAAAATACGGATCTTGCTCAACAAAGCCGACCAAATCGA
CTCCCAACAACTCATGCGTATCTACGGTGCCCTCATGTGGTCCCTTGGAA
AGGTGGTCAACACCCCCGAGGTCTGTCGCGTGTACATCGGCTCATTCTGG
GAACATCCGCTGAAGCACTCCCAAAACCGCTATCTACTCGAAAAGGAAAA
GGCGGATTTGTTGGGGGAGCTTGGTGGATTACCCCACAACGCCGTAGTGA
GGCGAATCAATGAACTGGTCAAACGCGCGAGGTCCGTCAAGGTGCACGCG
TATTTGATCCACTATCTCCGAAAGCAAGTCCCGACCGTGTTTGGAAAAAG
TGAGAAACAAGCCAAGTTGCTCCAGACACTACCCAGAGAGTTTGTGGCTT
GTGCTCGACGGTATGGCTTGCCCCTAGGGGATTTCCCTGATATCAATAAG
TTTCGGGCACGTTTGGGGGAGGTGAAGGATTTGAGGTAG

Synonyms

Publications