NO10G01470.1, NO10G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01470.1
Unique NameNO10G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1017
Alignment locationchr10:426007..427211 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:426007..427211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01470.1 vs.
Match: EWM25395.1 (GCK domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 478.8 bits (1231), Expect = 1.400e-131
Identity = 239/340 (70.29%), Postives = 278/340 (81.76%), Query Frame = 0 
Query:    1 MFAQHLRFASRLGAAGVGAAVLSSKHIEGNSST-----RCDAVGQQQLRRTTPPQQRLVFDHALDDREKDTAGFVGVFLDAASVARVQNAVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEE 336
            M+A  LR ASR+G  G+G A L   +   NS+T     RC+    QQ  R    QQ+  FDHALDDREKDTAGFVGVFLDAASV RVQNAVGG L RNAHAL+QLHPEP +KRSFAPLFG+KA+VVVRGVA DVST+Q+VIIVDV+VG G   RL PS+NGHGS+PTI+MASESWDDDVADLLGVDLARRLLENGILH KGSWDGVLPGQ+LDGIKYPPTRA+F+EL+ P+ACEGT+CAS DYD ++ +C+++ +    +    ++E E +V+GECPLCTYMMNSPCKDVFVVFK+CIDKAGSTDE++DL RCE SAA VHECIQ FGLFREHL+ E EE
Sbjct:    1 MYAHQLRIASRVGL-GLGVAALVRSNSNSNSTTISKPTRCETAQHQQQLRRPSSQQQTYFDHALDDREKDTAGFVGVFLDAASVKRVQNAVGGSLGRNAHALVQLHPEPGVKRSFAPLFGSKAEVVVRGVAEDVSTRQKVIIVDVNVGGG---RLYPSRNGHGSIPTIAMASESWDDDVADLLGVDLARRLLENGILHAKGSWDGVLPGQLLDGIKYPPTRAVFQELDAPVACEGTICASTDYDKQSDKCIIRADTASGMAEKSQDEAE-EVEGECPLCTYMMNSPCKDVFVVFKSCIDKAGSTDEREDLTRCEASAAFVHECIQNFGLFREHLQEEAEE 335
The following BLAST results are available for this feature:
BLAST of NO10G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25395.11.400e-13170.29GCK domain-containing protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01470NO10G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01470.1NO10G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01470.1.cds1NO10G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01470.1.cds2NO10G01470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01470.1 ID=NO10G01470.1|Name=NO10G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp
ATGTTTGCTCAGCACTTGCGGTTTGCGTCGCGCCTTGGAGCCGCCGGCGT
AGGCGCTGCGGTCCTCAGCAGCAAGCATATCGAAGGCAACAGCAGCACCC
GCTGCGACGCAGTGGGGCAGCAGCAGCTCAGGCGCACCACACCCCCACAA
CAGCGCTTAGTATTCGACCACGCCTTGGACGACCGGGAAAAGGACACGGC
TGGCTTCGTGGGGGTCTTTTTGGACGCGGCCTCGGTGGCTCGCGTGCAAA
ACGCGGTCGGCGGCCCCCTCTCCCGCAATGCCCACGCCCTCATCCAGCTC
CACCCCGAACCGGAATTGAAGCGCTCGTTTGCACCATTATTTGGGACCAA
GGCCAAGGTCGTGGTCCGCGGTGTGGCCACGGACGTCTCAACCCAGCAAC
AGGTCATCATCGTGGACGTGAGCGTCGGCAGCGGCCCTCACAGCCGTCTG
ACCCCCTCCAAGAACGGGCATGGGAGCGTTCCTACCATTTCGATGGCATC
CGAAAGCTGGGACGATGATGTCGCAGATTTGCTAGGCGTGGATCTGGCGA
GACGGTTGTTAGAAAATGGGATATTGCATGTCAAGGGGTCGTGGGATGGG
GTCTTGCCCGGACAGGTACTTGATGGGATTAAGTACCCACCCACGAGGGC
AATTTTTAGGGAGCTGGAAATCCCCATCGCATGTGAGGGGACGGTGTGTG
CGTCCGGGGATTATGATGATCGAGCAGCGCAGTGTATGGTGAAGAAGGAG
GTAGGGGTAGTGGTGGAAGCACCGAAGGAGGAGGAAGGAGAAGGGGATGT
GAAGGGGGAGTGTCCGCTCTGTACTTACATGATGAATAGCCCGTGTAAGG
ACGTATTTGTTGTATTTAAGGCTTGCATTGACAAGGCGGGGAGCACGGAC
GAACAGGATGATTTGCAGAGGTGCGAGCCGTCGGCAGCAAGCGTGCATGA
GTGCATTCAGAAGTTTGGGTTGTTCAGGGAGCATCTGGAGGGTGAGGGCG
AGGAAAAGGATGATTAG
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protein sequence of NO10G01470.1

>NO10G01470.1-protein ID=NO10G01470.1-protein|Name=NO10G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MFAQHLRFASRLGAAGVGAAVLSSKHIEGNSSTRCDAVGQQQLRRTTPPQ
QRLVFDHALDDREKDTAGFVGVFLDAASVARVQNAVGGPLSRNAHALIQL
HPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRL
TPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDG
VLPGQVLDGIKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKE
VGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTD
EQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEEKDD*
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mRNA from alignment at chr10:426007..427211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01470.1 ID=NO10G01470.1|Name=NO10G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp|location=Sequence derived from alignment at chr10:426007..427211- (Nannochloropsis oceanica)
ATGTTTGCTCAGCACTTGCGGTTTGCGTCGCGCCTTGGAGCCGCCGGCGT
AGGCGCTGCGGTCCTCAGCAGCAAGCATATCGAAGGCAACAGCAGCACCC
GCTGCGACGCAGTGGGGCAGCAGCAGCTCAGGCGCACCACACCCCCACAA
CAGCGCTTAGTATTCGACCACGCCTTGGACGACCGGGAAAAGGACACGGC
TGGCTTCGTGGGGGTCTTTTTGGACGCGGCCTCGGTGGCTCGCGTGCAAA
ACGCGGTCGGCGGCCCCCTCTCCCGCAATGCCCACGCCCTCATCCAGCTC
CACCCCGAACCGGAATTGAAGCGCTCGTTTGCACCATTATTTGGGACCAA
GGTATGTGTGTGTCAAGGAGGGGCCAAAGCGAGCGGTGGGATCGCAGGAA
GATCTGTCATTCATCTCCCTAGTTCGGAGGCACTGACTTGCATCCTCCAT
AAGGACACAAGTTTATGTCAACTACCTCTCGGGCCACTCACGACACTGAC
GTCTCCCCTCTGTCTTTTTCTCGTTTAATTGTTGTCTAGGCCAAGGTCGT
GGTCCGCGGTGTGGCCACGGACGTCTCAACCCAGCAACAGGTCATCATCG
TGGACGTGAGCGTCGGCAGCGGCCCTCACAGCCGTCTGACCCCCTCCAAG
AACGGGCATGGGAGCGTTCCTACCATTTCGATGGCATCCGAAAGCTGGGA
CGATGATGTCGCAGATTTGCTAGGCGTGGATCTGGCGAGACGGTTGTTAG
AAAATGGGATATTGCATGTCAAGGGGTCGTGGGATGGGGTCTTGCCCGGA
CAGGTACTTGATGGGATTAAGTACCCACCCACGAGGGCAATTTTTAGGGA
GCTGGAAATCCCCATCGCATGTGAGGGGACGGTGTGTGCGTCCGGGGATT
ATGATGATCGAGCAGCGCAGTGTATGGTGAAGAAGGAGGTAGGGGTAGTG
GTGGAAGCACCGAAGGAGGAGGAAGGAGAAGGGGATGTGAAGGGGGAGTG
TCCGCTCTGTACTTACATGATGAATAGCCCGTGTAAGGACGTATTTGTTG
TATTTAAGGCTTGCATTGACAAGGCGGGGAGCACGGACGAACAGGATGAT
TTGCAGAGGTGCGAGCCGTCGGCAGCAAGCGTGCATGAGTGCATTCAGAA
GTTTGGGTTGTTCAGGGAGCATCTGGAGGGTGAGGGCGAGGAAAAGGATG
ATTAG
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Coding sequence (CDS) from alignment at chr10:426007..427211-

>NO10G01470.1 ID=NO10G01470.1|Name=NO10G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr10:426007..427211- (Nannochloropsis oceanica)
ATGTTTGCTCAGCACTTGCGGTTTGCGTCGCGCCTTGGAGCCGCCGGCGT
AGGCGCTGCGGTCCTCAGCAGCAAGCATATCGAAGGCAACAGCAGCACCC
GCTGCGACGCAGTGGGGCAGCAGCAGCTCAGGCGCACCACACCCCCACAA
CAGCGCTTAGTATTCGACCACGCCTTGGACGACCGGGAAAAGGACACGGC
TGGCTTCGTGGGGGTCTTTTTGGACGCGGCCTCGGTGGCTCGCGTGCAAA
ACGCGGTCGGCGGCCCCCTCTCCCGCAATGCCCACGCCCTCATCCAGCTC
CACCCCGAACCGGAATTGAAGCGCTCGTTTGCACCATTATTTGGGACCAA
GGCCAAGGTCGTGGTCCGCGGTGTGGCCACGGACGTCTCAACCCAGCAAC
AGGTCATCATCGTGGACGTGAGCGTCGGCAGCGGCCCTCACAGCCGTCTG
ACCCCCTCCAAGAACGGGCATGGGAGCGTTCCTACCATTTCGATGGCATC
CGAAAGCTGGGACGATGATGTCGCAGATTTGCTAGGCGTGGATCTGGCGA
GACGGTTGTTAGAAAATGGGATATTGCATGTCAAGGGGTCGTGGGATGGG
GTCTTGCCCGGACAGGTACTTGATGGGATTAAGTACCCACCCACGAGGGC
AATTTTTAGGGAGCTGGAAATCCCCATCGCATGTGAGGGGACGGTGTGTG
CGTCCGGGGATTATGATGATCGAGCAGCGCAGTGTATGGTGAAGAAGGAG
GTAGGGGTAGTGGTGGAAGCACCGAAGGAGGAGGAAGGAGAAGGGGATGT
GAAGGGGGAGTGTCCGCTCTGTACTTACATGATGAATAGCCCGTGTAAGG
ACGTATTTGTTGTATTTAAGGCTTGCATTGACAAGGCGGGGAGCACGGAC
GAACAGGATGATTTGCAGAGGTGCGAGCCGTCGGCAGCAAGCGTGCATGA
GTGCATTCAGAAGTTTGGGTTGTTCAGGGAGCATCTGGAGGGTGAGGGCG
AGGAAAAGGATGATTAG
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Synonyms
Publications