NO10G01460.1, NO10G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01460.1
Unique NameNO10G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length606
Alignment locationchr10:424342..425253 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:424342..425253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01460.1 vs.
Match: EWM25467.1 (hypothetical protein Naga_100005g106 [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 2.400e-62
Identity = 136/196 (69.39%), Postives = 152/196 (77.55%), Query Frame = 0 
Query:    7 LFAALSFQASAFLLPPSLPSSR-DAVVLSAARTNDAVSSRQQHIGISLRSLSLAGLGTAVVLARDMAPANAKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAPL 202
            LFA L F A AF   P++  SR  + VL A       S+RQQH+  + +SL LAGLGT   +A   APANA  K EYLKEPTPEFE MQKRAM FE+ ALEKK+VWKDKYAVLP+AKTE ELV ALDGLT FVL ERGLPVGIK Q LVSDIRKVKRAGK+AKIWNK AEISYE+LIY+INY+QSPNT+RDLT PL
Sbjct:   59 LFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254
The following BLAST results are available for this feature:
BLAST of NO10G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25467.12.400e-6269.39hypothetical protein Naga_100005g106 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01460NO10G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01460.1NO10G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01460.1.cds1NO10G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01460.1.cds2NO10G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01460.1.cds3NO10G01460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01460.1 ID=NO10G01460.1|Name=NO10G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=606bp
ATGAAGCCCTGCCATCTTTTGTTTGCGGCCCTTTCCTTCCAGGCATCCGC
CTTCCTCCTCCCCCCTTCTCTTCCCTCCTCCCGGGATGCAGTCGTCTTGA
GCGCAGCCCGCACGAACGATGCAGTTTCGTCCCGGCAACAGCACATCGGC
ATTTCCCTCCGTTCTTTGTCACTCGCAGGACTTGGCACCGCGGTCGTGTT
GGCGCGCGACATGGCGCCGGCAAATGCGAAAGAGAAGCCCGAGTATCTGA
AGGAGCCTACGCCCGAGTTTGAGGCAATGCAAAAGCGCGCCATGGAGTTT
GAAAAACTAGCTCTCGAGAAGAAGAGGGTCTGGAAGGACAAGTACGCCGT
GCTACCCGAAGCCAAGACGGAGGATGAGTTAGTGAAGGCCCTGGATGGAC
TCACCGCCTTCGTCCTGGCTGAACGAGGATTGCCGGTTGGCATTAAGAAG
CAGGCCTTGGTCAGCGATATCCGCAAGGTGAAACGAGCGGGAAAGGAGGC
CAAAATCTGGAACAAGAATGCGGAGATCTCCTACGAGCAGCTGATCTATT
CCATCAACTACGAACAAAGCCCTAATACAGCTCGTGACCTGACGGCGCCT
TTATAG
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protein sequence of NO10G01460.1

>NO10G01460.1-protein ID=NO10G01460.1-protein|Name=NO10G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MKPCHLLFAALSFQASAFLLPPSLPSSRDAVVLSAARTNDAVSSRQQHIG
ISLRSLSLAGLGTAVVLARDMAPANAKEKPEYLKEPTPEFEAMQKRAMEF
EKLALEKKRVWKDKYAVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKK
QALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAP
L*
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mRNA from alignment at chr10:424342..425253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01460.1 ID=NO10G01460.1|Name=NO10G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at chr10:424342..425253- (Nannochloropsis oceanica)
ATGAAGCCCTGCCATCTTTTGTTTGCGGCCCTTTCCTTCCAGGCATCCGC
CTTCCTCCTCCCCCCTTCTCTTCCCTCCTCCCGGGATGCAGTCGTCTTGA
GCGCAGCCCGCACGAACGATGCAGTTTCGTCCCGGCAACAGCACATCGGC
ATTTCCCTCCGTTCTTTGTCACTCGCAGGACTTGGCACCGCGGTCGTGTT
GGCGCGCGACATGGCGCCGGCAAATGCGAAAGAGAAGCCCGAGTATCTGA
AGGAGCCTACGCCCGAGTTTGAGGTACGTACCTCAAGGCTGCATTAACAG
CCAACAATCAATTACGTCTCAGAATATTTCATGTCTATGAAACTGGATGC
CGAATTATTTTTCTCCCTTCTTGTTCCGCTTGTCCCTCCCTCACCGCCAC
CCCCATTAAACCACTTCTTAAGGCAATGCAAAAGCGCGCCATGGAGTTTG
AAAAACTAGCTCTCGAGAAGAAGAGGGTCTGGAAGGACAAGTACGCCGTG
CTACCCGAAGCCAAGACGGAGGATGAGTTAGTGAAGGCCCTGGATGGACT
CACCGCCTTCGTCCTGGCTGAACGAGGATTGCCGGTTGGCATTAAGAAGC
AGGTGCGTGGGACAAATTATCATCTCTTTGTTATGAATATTATGTCTATA
TATATCGCCAGAAAAGGCCTTGGAATAAGATTACAAATGGACCTATTCGG
CCTGAAAATCCAACCTTAAACATTCTGAAATCATGCTGAATCATATATGC
AAAATACAGGCCTTGGTCAGCGATATCCGCAAGGTGAAACGAGCGGGAAA
GGAGGCCAAAATCTGGAACAAGAATGCGGAGATCTCCTACGAGCAGCTGA
TCTATTCCATCAACTACGAACAAAGCCCTAATACAGCTCGTGACCTGACG
GCGCCTTTATAG
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Coding sequence (CDS) from alignment at chr10:424342..425253-

>NO10G01460.1 ID=NO10G01460.1|Name=NO10G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr10:424342..425253- (Nannochloropsis oceanica)
ATGAAGCCCTGCCATCTTTTGTTTGCGGCCCTTTCCTTCCAGGCATCCGC
CTTCCTCCTCCCCCCTTCTCTTCCCTCCTCCCGGGATGCAGTCGTCTTGA
GCGCAGCCCGCACGAACGATGCAGTTTCGTCCCGGCAACAGCACATCGGC
ATTTCCCTCCGTTCTTTGTCACTCGCAGGACTTGGCACCGCGGTCGTGTT
GGCGCGCGACATGGCGCCGGCAAATGCGAAAGAGAAGCCCGAGTATCTGA
AGGAGCCTACGCCCGAGTTTGAGGCAATGCAAAAGCGCGCCATGGAGTTT
GAAAAACTAGCTCTCGAGAAGAAGAGGGTCTGGAAGGACAAGTACGCCGT
GCTACCCGAAGCCAAGACGGAGGATGAGTTAGTGAAGGCCCTGGATGGAC
TCACCGCCTTCGTCCTGGCTGAACGAGGATTGCCGGTTGGCATTAAGAAG
CAGGCCTTGGTCAGCGATATCCGCAAGGTGAAACGAGCGGGAAAGGAGGC
CAAAATCTGGAACAAGAATGCGGAGATCTCCTACGAGCAGCTGATCTATT
CCATCAACTACGAACAAAGCCCTAATACAGCTCGTGACCTGACGGCGCCT
TTATAG
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Synonyms
Publications