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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:393633..397099 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01340.1 vs.
Match: EWM25380.1 (peptidyl-prolyl cis-trans isomerase cyclophilin type [Nannochloropsis gaditana]) HSP 1 Score: 614.4 bits (1583), Expect = 3.000e-172 Identity = 328/416 (78.85%), Postives = 362/416 (87.02%), Query Frame = 0
Query: 63 WRATVLLVIALLAPT-TQAFFLRPATSTSPSQL---AAQSHDQSKNDVRHFSLTSFP-LAGLGFLALNVFAPFIASTPAHALPQKAPETNAQMLLIEALPNKNPLVLDMASSLSKITTEGSGNIRSIDAKGSKGIKPWPEVQRAARSASGTIAGRAKDLIKGATDEKAAQAVLNDLNIRIDQLGAAADAQDREAAVTAQVQAMLRLEQLGTLQVASMPFQPPTAEYPAVPQLLGRAEIEITTRAGKTRQTRQMYAVLDGYSAPLSAGQFVDLAQKKAFDDTKVVATDESSVTFTADAAKAPKRTVPLEIFVVGDEEPTYGETLEEQGRFKERTVLPFNAYGTIAMLHPPDDPNGGANSFFFLKADPSYTPAGLNTLDGAFSVIGYVVKGEDALDDLLAGDAIESVKVLSGLELLKQ 474
W + + L+A T QAFF +ST P L AA +Q+K+ ++ S S L GLG LALNV AP + A ALPQKAPETNAQMLLI+ALP KNP++LDMASSL+K+TTEGSGNIRSID+KGSKGIKPWPEVQ+AARSASGTIAGR K+LIKGATDEKAAQAVL DLN+RIDQLGAAADAQ+REAAVTAQVQA+LRLEQLGTLQV +MPFQPPT EYP+VPQLLGRAEIEITTRAGKTRQTRQMYA+LDG+SAPLSAGQFVDLAQ+KAFD TK+VATDESSVT TADA K+PKRTVPLEI V GD+EPTYGETLEEQGRFKER VLPFNAYGT+AMLHP DDPNGGANSFFFLKADPSYTPAGLNTLDGAFSVIGYVV+GEDALDDLLAGD +E+V+VLSG ELLKQ
Sbjct: 6 WNGVTTIWVFLVAGTGAQAFFT--VSSTRPHSLLSRAACDLNQNKDSLKQASFPSLQSLPGLGLLALNVLAPSLIPPSAQALPQKAPETNAQMLLIDALPKKNPVLLDMASSLAKVTTEGSGNIRSIDSKGSKGIKPWPEVQKAARSASGTIAGRGKELIKGATDEKAAQAVLTDLNVRIDQLGAAADAQNREAAVTAQVQALLRLEQLGTLQVPTMPFQPPTVEYPSVPQLLGRAEIEITTRAGKTRQTRQMYAILDGFSAPLSAGQFVDLAQRKAFDQTKIVATDESSVTITADAVKSPKRTVPLEILVEGDKEPTYGETLEEQGRFKERVVLPFNAYGTLAMLHPLDDPNGGANSFFFLKADPSYTPAGLNTLDGAFSVIGYVVQGEDALDDLLAGDVVENVRVLSGSELLKQ 419
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01340.1 ID=NO10G01340.1|Name=NO10G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3355bp CTCTTTTTTTACTTGCATACTTCTTTCCCGGCAATCAATTTGGTTGCTCA ATCTGTATGGTCACCCTGTCCATCGTTACCCTGGCTTTCTCACAACCACA CCCCCTTGACCGTCGCAGCTTCCGCCACCTCCCGCTCCTCCCATTCCTGA TACCCGACAAATGCGCACCAATTTTTGCTTCACTGACAAGATCAAGGTCG CTCACATTTAGATCGTAATTACTTAAAAACTTCATTTCTTTGCTATGACT ATCAGACACTCTTCAACGTCAACCTCACGTCGACGTCCGAGTCGTCACGT CGACGTTTATGACGTTTGGATTTCTTGCTTCTTGAGGCCTGTACCACTGC TATTTGCTCACGGTTAAAAGACACCCTCATACTATAACATACACACACAC ACCGAACAAATGTCTGACTTGTCGTCAGAAGAAATTTCTAATGACCCATC CACCACTAGCAATGCTGCCAGGAGCCTGTCTGTAGCTGCACGGGATTTAG AAGCGGAGGAACGGGGCAAGCGCGCCCAACATCTCAACCTGTACGCCACA GTCTTACAGGTGGTGAAGGAGAAATATTATGTGTGACGCTCCACCCTCCT GATCAAGCCCTTCAATAAGGATGGAAGGGGTGGCTATAACTGTATGGGGT GCAACGAATGGAAGAAGGGAAACTTCTCGCAGGCGGGCGACCACCTAAGG AATCGCCATCCAGACGAATGGACTCGCATGAAACGCCTCTCTAACGCAGA GGAGAGTGATACCGTGATGCCTTGTCCTTTGGGTTGAAGGTGCAGACCAA ACTCCATCACCACCAATCCTGGCGAGGCGATGCCCTCCAACGCGGGCACA AGTACCTTACTGGCTTATTTTTTGGCAGCCTCCGACCATTCAACCTATTC AAGCCCTCAATTACCTTGGTCGGGAAATCTGTGATCACGGCGGCCGTGTG GTGCTTCTTCAAGCACTCCACATGTCCAGGCAGATGAGGCGGGGCCTAAA GTTGTCGTCCAGTGTGGTGGCAAGCGTGCCGTTGTAGGACGTGCCGTTGC GTCCGGCCCAAGCATCTATTTGAAGGCAGGCGGTCAGACTACATACTGGA CCAACCCCCTTAACCGAGCTCAGCGGGGCGAAATAGCCCTTGATGAGCCC CTTGAACTGGCAAACATTGCCCCCGTGTACTTGCGTACGAATCAAAAAGC AAATTAATGGCACCCCTTACTCTATTACAAATTGATGTTTATGGCCTGGT GTTTGGGGGATTTGCGATGCTGCAGCTTGAAGGAGGCGGATCAGTTAGCC ATGTGAGAAGCGGCAACACAGGGGACTACCCTTGGTCCCTAAGTTCCATG GATTGTTTTTCGCTTCCTCTAGTCTTGCTGGGCACGGTTGTGACGCTTTG TTGTAGCCCCATCCCCTCGTGACAAGCGGTAACGCCGTCACCCCCCCTAT CTACCATCCGCGACATTCCGGTTCTCGTGTTGACGTGACGAGACTACGTT TGACGGGTCAAACTCAACCCTGGGGGAGGTAGAGGTCCTCTACCTCCCCG TTTTCTCTACATTCCTCCCCGGCTTTCCCCCTCCAAGTTTGCCGCTGTTG ACGACAAGGACTTTCACATTCTACTTACATACTTCCCGCCCCCTTTTATA AAGAAGAGGAGGTTACCCACCAAACCATCGTCCTCCACCTCGCACTTTTG CCGTTGTTATTGTTGTTGCTGCTGATGCTGCTGCTGTCTGGTGCTAGGAT GGTTCAAGGGGAATGCGCAGCGATCATTGCCTTAAATGTATAACACTGAG TGTACACGTACGTGCATATGGCCACTGGCAGTTCGCGCTCATTTGGCGAG ATTATGTCAGGTCCAGCCTCGGTGTCAGACCCTGTCCTCGCACTTAACCA TCCTAACTCACCCAGTTTCTACATCGCGGCATGCCAAACAGACTATGCGG ACGACGCTGATGGAAAGCTTTTGGAGAGCCACTGTGCTCCTGGTCATAGC ACTTTTGGCCCCCACCACACAAGCCTTCTTCTTGCGACCTGCAACATCGA CCTCTCCGTCCCAGCTGGCAGCCCAGTCTCACGATCAAAGCAAGAATGAC GTGCGGCATTTCTCCCTGACTTCTTTTCCACTTGCAGGCCTCGGTTTTTT GGCGCTGAATGTTTTCGCCCCCTTCATAGCGAGCACCCCCGCGCATGCCC TCCCGCAAAAAGCGCCCGAAACCAATGCGCAAATGCTGCTGATCGAAGCC CTTCCCAACAAGAACCCCTTGGTCTTGGACATGGCCTCTTCCCTGTCTAA AATTACTACAGAGGGCAGTGGAAACATTCGGTCCATCGACGCCAAAGGCA GCAAAGGTATCAAGCCATGGCCGGAAGTTCAGCGGGCGGCGCGATCTGCA TCTGGCACTATTGCCGGTCGTGCCAAGGACCTCATCAAGGGGGCCACGGA CGAGAAAGCTGCTCAAGCCGTTCTCAATGATTTGAACATTCGCATCGACC AGCTCGGCGCGGCGGCAGACGCCCAAGATCGTGAAGCAGCGGTCACGGCA CAAGTCCAGGCTATGCTGCGGTTAGAGCAGCTGGGCACATTGCAAGTGGC CTCGATGCCTTTCCAACCCCCAACTGCAGAGTACCCTGCCGTGCCCCAGC TACTGGGAAGAGCCGAAATCGAGATTACAACTCGTGCAGGAAAGACGAGG CAGACTCGGCAGATGTACGCTGTGCTTGATGGATATAGTGCACCATTGTC GGCCGGACAGTTTGTGGACCTCGCGCAAAAAAAAGCGTTTGATGACACGA AAGTTGTAGCGACGGACGAAAGCTCTGTGACTTTTACCGCGGATGCAGCC AAGGCCCCGAAGCGAACAGTACCCTTGGAAATTTTTGTGGTAGGGGATGA GGAGCCTACCTATGGTGAAACCTTGGAGGAGCAGGGTAGGTTTAAGGAGC GGACTGTGTTGCCATTCAATGCGTACGGCACCATTGCGATGCTACACCCG CCTGATGACCCGAATGGAGGAGCAAATTCTTTTTTCTTTTTGAAGGCCGA TCCCAGCTATACGCCAGCGGGATTGAACACTTTGGATGGGGCGTTCAGTG TGATAGGGTATGTGGTGAAGGGGGAGGATGCCCTGGATGATTTGTTGGCG GGAGACGCGATTGAGAGCGTCAAGGTGTTGTCGGGGTTGGAATTGTTGAA ACAAAGCGGCAAATAATTTTCTTGCCGGATTGCAATTGAAATAAAACCGT ATTTCGAAATGGATAAGCCATCATAATTTCGTTTTTTGCTGGGGAGAGGG GGGTAGGTTTTATCGCCGAGACTGTTATTTCCGATGTAGAGAAAAATAAA AAAAT back to topprotein sequence of NO10G01340.1 >NO10G01340.1-protein ID=NO10G01340.1-protein|Name=NO10G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp MYNTECTRTCIWPLAVRAHLARLCQVQPRCQTLSSHLTILTHPVSTSRHA KQTMRTTLMESFWRATVLLVIALLAPTTQAFFLRPATSTSPSQLAAQSHD QSKNDVRHFSLTSFPLAGLGFLALNVFAPFIASTPAHALPQKAPETNAQM LLIEALPNKNPLVLDMASSLSKITTEGSGNIRSIDAKGSKGIKPWPEVQR AARSASGTIAGRAKDLIKGATDEKAAQAVLNDLNIRIDQLGAAADAQDRE AAVTAQVQAMLRLEQLGTLQVASMPFQPPTAEYPAVPQLLGRAEIEITTR AGKTRQTRQMYAVLDGYSAPLSAGQFVDLAQKKAFDDTKVVATDESSVTF TADAAKAPKRTVPLEIFVVGDEEPTYGETLEEQGRFKERTVLPFNAYGTI AMLHPPDDPNGGANSFFFLKADPSYTPAGLNTLDGAFSVIGYVVKGEDAL DDLLAGDAIESVKVLSGLELLKQSGK* back to topmRNA from alignment at chr10:393633..397099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01340.1 ID=NO10G01340.1|Name=NO10G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3467bp|location=Sequence derived from alignment at chr10:393633..397099- (Nannochloropsis oceanica) CTCTTTTTTTACTTGCATACTTCTTTCCCGGCAATCAATTTGGTTGCTCA
ATCTGTATGGTCACCCTGTCCATCGTTACCCTGGCTTTCTCACAACCACA
CCCCCTTGACCGTCGCAGCTTCCGCCACCTCCCGCTCCTCCCATTCCTGA
TACCCGACAAATGCGCACCAATTTTTGCTTCACTGACAAGATCAAGGTCG
CTCACATTTAGATCGTAATTACTTAAAAACTTCATTTCTTTGCTATGACT
ATCAGACACTCTTCAACGTCAACCTCACGTCGACGTCCGAGTCGTCACGT
CGACGTTTATGACGTTTGGATTTCTTGCTTCTTGAGGCCTGTACCACTGC
TATTTGCTCACGGTTAAAAGACACCCTCATACTATAACATACACACACAC
ACCGAACAAATGTCTGACTTGTCGTCAGAAGAAATTTCTAATGACCCATC
CACCACTAGCAATGCTGCCAGGAGCCTGTCTGTAGCTGCACGGGATTTAG
AAGCGGAGGAACGGGGCAAGCGCGCCCAACATCTCAACCTGTACGCCACA
GTCTTACAGGTGGTGAAGGAGAAATATTATGTGTGACGCTCCACCCTCCT
GATCAAGCCCTTCAATAAGGATGGAAGGGGTGGCTATAACTGTATGGGGT
GCAACGAATGGAAGAAGGGAAACTTCTCGCAGGCGGGCGACCACCTAAGG
AATCGCCATCCAGACGAATGGACTCGCATGAAACGCCTCTCTAACGCAGA
GGAGAGTGATACCGTGATGCCTTGTCCTTTGGGTTGAAGGTGCAGACCAA
ACTCCATCACCACCAATCCTGGCGAGGCGATGCCCTCCAACGCGGGCACA
AGTACCTTACTGGCTTATTTTTTGGCAGCCTCCGACCATTCAACCTATTC
AAGCCCTCAATTACCTTGGTCGGGAAATCTGTGATCACGGCGGCCGTGTG
GTGCTTCTTCAAGCACTCCACATGTCCAGGCAGATGAGGCGGGGCCTAAA
GTTGTCGTCCAGTGTGGTGGCAAGCGTGCCGTTGTAGGACGTGCCGTTGC
GTCCGGCCCAAGCATCTATTTGAAGGCAGGCGGTCAGACTACATACTGGA
CCAACCCCCTTAACCGAGCTCAGCGGGGCGAAATAGCCCTTGATGAGCCC
CTTGAACTGGCAAACATTGCCCCCGTGTACTTGCGTACGAATCAAAAAGC
AAATTAATGGCACCCCTTACTCTATTACAAATTGATGTTTATGGCCTGGT
GTTTGGGGGATTTGCGATGCTGCAGCTTGAAGGAGGCGGATCAGTTAGCC
ATGTGAGAAGCGGCAACACAGGGGACTACCCTTGGTCCCTAAGTTCCATG
GATTGTTTTTCGCTTCCTCTAGTCTTGCTGGGCACGGTTGTGACGCTTTG
TTGTAGCCCCATCCCCTCGTGACAAGCGGTAACGCCGTCACCCCCCCTAT
CTACCATCCGCGACATTCCGGTTCTCGTGTTGACGTGACGAGACTACGTT
TGACGGGTCAAACTCAACCCTGGGGGAGGTAGAGGTCCTCTACCTCCCCG
TTTTCTCTACATTCCTCCCCGGCTTTCCCCCTCCAAGTTTGCCGCTGTTG
ACGACAAGGACTTTCACATTCTACTTACATACTTCCCGCCCCCTTTTATA
AAGAAGAGGAGGTTACCCACCAAACCATCGTCCTCCACCTCGCACTTTTG
CCGTTGTTATTGTTGTTGCTGCTGATGCTGCTGCTGTCTGGTGCTAGGAT
GGTTCAAGGGGAATGCGCAGCGATCATTGCCTTAAATGTATAACACTGAG
TGTACACGTACGTGCATATGGCCACTGGCAGTTCGCGCTCATTTGGCGAG
ATTATGTCAGGTCCAGCCTCGGTGTCAGACCCTGTCCTCGCACTTAACCA
TCCTAACTCACCCAGTTTCTACATCGCGGCATGCCAAACAGACTATGCGG
ACGACGCTGATGGAAAGCTTTTGGAGAGCCACTGTGCTCCTGGTCATAGC
ACTTTTGGCCCCCACCACACAAGCCTTCTTCTTGCGACCTGCAACATCGA
CCTCTCCGTCCCAGCTGGCAGCCCAGTCTCACGATCAAAGCAAGAATGAC
GTGCGGCATTTCTCCCTGACTTCTTTTCCACTTGCAGGCCTCGGTTTTTT
GGCGCTGAATGTTTTCGCCCCCTTCATAGCGAGCACCCCCGCGCATGCCC
TCCCGCAAAAAGCGCCCGAAACCAATGCGCAAATGCTGCTGATCGAAGCC
CTTCCCAACAAGAACCCCTTGGTCTTGGACATGGCCTCTTCCCTGTCTAA
AATTACTACAGGTACGTTTCTTCCTTTCCTCCCTTCTTGCCTCCCCACAA
TGAGCTCCCAAACAAGTACTTCGTCCTCCACGCCTGCCTACACGAGTCCG
CATCCAACTTATCCATCACACAGAGGGCAGTGGAAACATTCGGTCCATCG
ACGCCAAAGGCAGCAAAGGTATCAAGCCATGGCCGGAAGTTCAGCGGGCG
GCGCGATCTGCATCTGGCACTATTGCCGGTCGTGCCAAGGACCTCATCAA
GGGGGCCACGGACGAGAAAGCTGCTCAAGCCGTTCTCAATGATTTGAACA
TTCGCATCGACCAGCTCGGCGCGGCGGCAGACGCCCAAGATCGTGAAGCA
GCGGTCACGGCACAAGTCCAGGCTATGCTGCGGTTAGAGCAGCTGGGCAC
ATTGCAAGTGGCCTCGATGCCTTTCCAACCCCCAACTGCAGAGTACCCTG
CCGTGCCCCAGCTACTGGGAAGAGCCGAAATCGAGATTACAACTCGTGCA
GGAAAGACGAGGCAGACTCGGCAGATGTACGCTGTGCTTGATGGATATAG
TGCACCATTGTCGGCCGGACAGTTTGTGGACCTCGCGCAAAAAAAAGCGT
TTGATGACACGAAAGTTGTAGCGACGGACGAAAGCTCTGTGACTTTTACC
GCGGATGCAGCCAAGGCCCCGAAGCGAACAGTACCCTTGGAAATTTTTGT
GGTAGGGGATGAGGAGCCTACCTATGGTGAAACCTTGGAGGAGCAGGGTA
GGTTTAAGGAGCGGACTGTGTTGCCATTCAATGCGTACGGCACCATTGCG
ATGCTACACCCGCCTGATGACCCGAATGGAGGAGCAAATTCTTTTTTCTT
TTTGAAGGCCGATCCCAGCTATACGCCAGCGGGATTGAACACTTTGGATG
GGGCGTTCAGTGTGATAGGGTATGTGGTGAAGGGGGAGGATGCCCTGGAT
GATTTGTTGGCGGGAGACGCGATTGAGAGCGTCAAGGTGTTGTCGGGGTT
GGAATTGTTGAAACAAAGCGGCAAATAATTTTCTTGCCGGATTGCAATTG
AAATAAAACCGTATTTCGAAATGGATAAGCCATCATAATTTCGTTTTTTG
CTGGGGAGAGGGGGGTAGGTTTTATCGCCGAGACTGTTATTTCCGATGTA
GAGAAAAATAAAAAAAT back to topCoding sequence (CDS) from alignment at chr10:393633..397099- >NO10G01340.1 ID=NO10G01340.1|Name=NO10G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr10:393633..397099- (Nannochloropsis oceanica) ATGTATAACACTGAGTGTACACGTACGTGCATATGGCCACTGGCAGTTCG CGCTCATTTGGCGAGATTATGTCAGGTCCAGCCTCGGTGTCAGACCCTGT CCTCGCACTTAACCATCCTAACTCACCCAGTTTCTACATCGCGGCATGCC AAACAGACTATGCGGACGACGCTGATGGAAAGCTTTTGGAGAGCCACTGT GCTCCTGGTCATAGCACTTTTGGCCCCCACCACACAAGCCTTCTTCTTGC GACCTGCAACATCGACCTCTCCGTCCCAGCTGGCAGCCCAGTCTCACGAT CAAAGCAAGAATGACGTGCGGCATTTCTCCCTGACTTCTTTTCCACTTGC AGGCCTCGGTTTTTTGGCGCTGAATGTTTTCGCCCCCTTCATAGCGAGCA CCCCCGCGCATGCCCTCCCGCAAAAAGCGCCCGAAACCAATGCGCAAATG CTGCTGATCGAAGCCCTTCCCAACAAGAACCCCTTGGTCTTGGACATGGC CTCTTCCCTGTCTAAAATTACTACAGAGGGCAGTGGAAACATTCGGTCCA TCGACGCCAAAGGCAGCAAAGGTATCAAGCCATGGCCGGAAGTTCAGCGG GCGGCGCGATCTGCATCTGGCACTATTGCCGGTCGTGCCAAGGACCTCAT CAAGGGGGCCACGGACGAGAAAGCTGCTCAAGCCGTTCTCAATGATTTGA ACATTCGCATCGACCAGCTCGGCGCGGCGGCAGACGCCCAAGATCGTGAA GCAGCGGTCACGGCACAAGTCCAGGCTATGCTGCGGTTAGAGCAGCTGGG CACATTGCAAGTGGCCTCGATGCCTTTCCAACCCCCAACTGCAGAGTACC CTGCCGTGCCCCAGCTACTGGGAAGAGCCGAAATCGAGATTACAACTCGT GCAGGAAAGACGAGGCAGACTCGGCAGATGTACGCTGTGCTTGATGGATA TAGTGCACCATTGTCGGCCGGACAGTTTGTGGACCTCGCGCAAAAAAAAG CGTTTGATGACACGAAAGTTGTAGCGACGGACGAAAGCTCTGTGACTTTT ACCGCGGATGCAGCCAAGGCCCCGAAGCGAACAGTACCCTTGGAAATTTT TGTGGTAGGGGATGAGGAGCCTACCTATGGTGAAACCTTGGAGGAGCAGG GTAGGTTTAAGGAGCGGACTGTGTTGCCATTCAATGCGTACGGCACCATT GCGATGCTACACCCGCCTGATGACCCGAATGGAGGAGCAAATTCTTTTTT CTTTTTGAAGGCCGATCCCAGCTATACGCCAGCGGGATTGAACACTTTGG ATGGGGCGTTCAGTGTGATAGGGTATGTGGTGAAGGGGGAGGATGCCCTG GATGATTTGTTGGCGGGAGACGCGATTGAGAGCGTCAAGGTGTTGTCGGG GTTGGAATTGTTGAAACAAAGCGGCAAATAA back to top
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