NO10G01270.1, NO10G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01270.1
Unique NameNO10G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1293
Alignment locationchr10:374934..376354 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:374934..376354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01270.1 vs.
Match: EWM25355.1 (solute carrier family 25 member 35 [Nannochloropsis gaditana])

HSP 1 Score: 515.4 bits (1326), Expect = 1.500e-142
Identity = 267/354 (75.42%), Postives = 298/354 (84.18%), Query Frame = 0 
Query:   27 RKRGRPEHQKTWLQEFLLGGVSTSVACLFSNPFDVLKVRMQLQGELKSKGTYQVHYRNFLHAAWTIMRVEGILALQKGLGPAILYQFVMNGVRLGTFQTLVNRGVTADNEMRTREQGGHTRSMRTMSSGSSNSSSSGISSNSGGGKLARSALAGALGGALGGVVGSPLYLVKTQLQSRALQAIAVGHQHHHTSTYQALREIHMQHGYRGLWRGVEGAVPRLMLGSALQLSTFSYIKEAVRKWGWVDEGWVPVLASLLSSVNIILFMEPLDVVRTRLYNQPTDERGRGIYYRGFVDCFTRVVEKEGFFHGMYKGAGAAYFRMAPQAILGLSFWDSFRRIWYGRGFGRNGNEEMEE 381
            RKR RP H+KTWLQEF+LGG STS+ACL SNPFDVLKVRMQLQGELKSKG+YQVHYRN   AAWTI+RVEGI ALQKGLGPAILYQF MNGVRLGTFQTLVN G  AD E     + G + S R+M  G  ++S S  +S+S    +ARSA+AGALGGALGG+V SPLYLVKTQLQSRAL+AIAVGHQH HTST+QALR+I+ + G RGLWRGVEGAVPRL LGSALQLSTFSY+KEAVR+ G V+E WVPV+ASLLSSVNII+FMEPLDVVRTRLYNQPTD RGRG+YYRGF DCF +V++ EGF HGMYKGAGAAYFRMAPQAI+GLSFWDS RR WYG G G  G +  EE
Sbjct:   11 RKRKRP-HEKTWLQEFILGGTSTSIACLISNPFDVLKVRMQLQGELKSKGSYQVHYRNIFTAAWTIIRVEGIFALQKGLGPAILYQFCMNGVRLGTFQTLVNMGQKADREREEARRRG-SASPRSMD-GPRDASDSLPASSSPSNNVARSAVAGALGGALGGIVASPLYLVKTQLQSRALRAIAVGHQHEHTSTFQALRKIYGEQGLRGLWRGVEGAVPRLTLGSALQLSTFSYMKEAVRRSGHVEELWVPVVASLLSSVNIIIFMEPLDVVRTRLYNQPTDARGRGLYYRGFWDCFRKVIQTEGFLHGMYKGAGAAYFRMAPQAIMGLSFWDSIRRAWYGTGAGDEGGDGGEE 361
The following BLAST results are available for this feature:
BLAST of NO10G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25355.11.500e-14275.42solute carrier family 25 member 35 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01270NO10G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01270.1NO10G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01270.1.cds1NO10G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01270.1.cds2NO10G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01270.1 ID=NO10G01270.1|Name=NO10G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ATTTCTCAGACGTCAACTAATAATAATACCACAAACACGTCGTACAGTTC
ACGCGATGGGGCCCTTTCGCGAAAGTCCAAAACGAGCCGACATGTCGGCG
CCATTAACAACAATTACGACGCCAATCACGAAGAGGAAGCGGGGCCGGCC
GGAACACCAGAAGACATGGCTTCAAGAATTCTTGCTCGGCGGCGTCTCGA
CAAGTGTGGCATGCCTATTCAGCAACCCGTTTGATGTGCTCAAGGTACGA
ATGCAACTCCAAGGTGAACTCAAGAGCAAAGGCACCTACCAAGTCCACTA
CCGTAACTTCCTCCATGCCGCTTGGACCATTATGCGGGTCGAGGGCATCC
TGGCCTTACAAAAGGGATTGGGACCCGCGATCCTTTACCAATTTGTAATG
AACGGGGTAAGGCTGGGCACGTTCCAAACGCTCGTCAACCGCGGAGTGAC
CGCCGATAACGAAATGAGGACGAGAGAACAAGGAGGACATACTCGTAGCA
TGAGAACCATGAGTAGTGGCAGCTCCAATAGCAGTAGTAGTGGCATTAGT
AGCAACAGTGGTGGCGGCAAGCTGGCCCGCTCCGCATTGGCTGGAGCATT
GGGTGGAGCTTTGGGTGGGGTTGTGGGTAGTCCCCTCTACCTCGTCAAAA
CGCAATTACAATCACGCGCACTACAAGCTATTGCTGTTGGACATCAACAT
CACCATACCTCGACTTATCAGGCCTTAAGAGAAATACACATGCAACATGG
TTACAGAGGCTTGTGGCGAGGGGTGGAGGGAGCGGTGCCGCGACTGATGC
TGGGATCCGCATTGCAGCTGTCTACCTTTTCGTATATCAAAGAGGCGGTT
CGGAAGTGGGGATGGGTGGATGAGGGATGGGTCCCTGTACTGGCATCATT
ACTTTCGAGCGTGAATATCATTTTGTTTATGGAGCCATTGGATGTGGTGA
GGACGCGGCTGTATAATCAGCCAACGGATGAAAGAGGAAGGGGAATTTAT
TACAGGGGGTTTGTGGATTGTTTTACAAGGGTGGTGGAAAAAGAAGGATT
CTTCCATGGAATGTACAAGGGGGCGGGGGCTGCATACTTCAGGATGGCAC
CGCAGGCGATCCTTGGGCTGAGTTTCTGGGACTCGTTCAGGAGGATCTGG
TATGGCAGGGGGTTCGGGAGGAATGGGAATGAAGAGATGGAGGAGTGAAA
GACTTGAGGGACAGAAACCAAGCAAGCCTAGGCAAAAAAGTAACAACAAA
TTATTTTTTCCATAAAAGTAATTAGTCTTGTTAGTAAGCCTCC
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protein sequence of NO10G01270.1

>NO10G01270.1-protein ID=NO10G01270.1-protein|Name=NO10G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MGPFRESPKRADMSAPLTTITTPITKRKRGRPEHQKTWLQEFLLGGVSTS
VACLFSNPFDVLKVRMQLQGELKSKGTYQVHYRNFLHAAWTIMRVEGILA
LQKGLGPAILYQFVMNGVRLGTFQTLVNRGVTADNEMRTREQGGHTRSMR
TMSSGSSNSSSSGISSNSGGGKLARSALAGALGGALGGVVGSPLYLVKTQ
LQSRALQAIAVGHQHHHTSTYQALREIHMQHGYRGLWRGVEGAVPRLMLG
SALQLSTFSYIKEAVRKWGWVDEGWVPVLASLLSSVNIILFMEPLDVVRT
RLYNQPTDERGRGIYYRGFVDCFTRVVEKEGFFHGMYKGAGAAYFRMAPQ
AILGLSFWDSFRRIWYGRGFGRNGNEEMEE*
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mRNA from alignment at chr10:374934..376354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01270.1 ID=NO10G01270.1|Name=NO10G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at chr10:374934..376354- (Nannochloropsis oceanica)
ATTTCTCAGACGTCAACTAATAATAATACCACAAACACGTCGTACAGTTC
ACGCGATGGGGCCCTTTCGCGAAAGTCCAAAACGAGCCGACATGTCGGCG
CCATTAACAACAATTACGACGCCAATCACGAAGAGGAAGCGGGGCCGGCC
GGAACACCAGAAGACATGGCTTCAAGAATTCTTGCTCGGCGGCGTCTCGA
CAAGTGTGGCATGCCTATTCAGCAACCCGTTTGATGTGCTCAAGGTACTA
TCAGAAATGTATGCTTTTCGTCTATTTGTCTCTATCCAAGTCCTCTCGCC
CGCCTATTTTAGTTCCCTCAAGTCCCATTCATTTTATTTCCTTCCCTCCT
TCCCCACACCCACTCCCTCCAGGTACGAATGCAACTCCAAGGTGAACTCA
AGAGCAAAGGCACCTACCAAGTCCACTACCGTAACTTCCTCCATGCCGCT
TGGACCATTATGCGGGTCGAGGGCATCCTGGCCTTACAAAAGGGATTGGG
ACCCGCGATCCTTTACCAATTTGTAATGAACGGGGTAAGGCTGGGCACGT
TCCAAACGCTCGTCAACCGCGGAGTGACCGCCGATAACGAAATGAGGACG
AGAGAACAAGGAGGACATACTCGTAGCATGAGAACCATGAGTAGTGGCAG
CTCCAATAGCAGTAGTAGTGGCATTAGTAGCAACAGTGGTGGCGGCAAGC
TGGCCCGCTCCGCATTGGCTGGAGCATTGGGTGGAGCTTTGGGTGGGGTT
GTGGGTAGTCCCCTCTACCTCGTCAAAACGCAATTACAATCACGCGCACT
ACAAGCTATTGCTGTTGGACATCAACATCACCATACCTCGACTTATCAGG
CCTTAAGAGAAATACACATGCAACATGGTTACAGAGGCTTGTGGCGAGGG
GTGGAGGGAGCGGTGCCGCGACTGATGCTGGGATCCGCATTGCAGCTGTC
TACCTTTTCGTATATCAAAGAGGCGGTTCGGAAGTGGGGATGGGTGGATG
AGGGATGGGTCCCTGTACTGGCATCATTACTTTCGAGCGTGAATATCATT
TTGTTTATGGAGCCATTGGATGTGGTGAGGACGCGGCTGTATAATCAGCC
AACGGATGAAAGAGGAAGGGGAATTTATTACAGGGGGTTTGTGGATTGTT
TTACAAGGGTGGTGGAAAAAGAAGGATTCTTCCATGGAATGTACAAGGGG
GCGGGGGCTGCATACTTCAGGATGGCACCGCAGGCGATCCTTGGGCTGAG
TTTCTGGGACTCGTTCAGGAGGATCTGGTATGGCAGGGGGTTCGGGAGGA
ATGGGAATGAAGAGATGGAGGAGTGAAAGACTTGAGGGACAGAAACCAAG
CAAGCCTAGGCAAAAAAGTAACAACAAATTATTTTTTCCATAAAAGTAAT
TAGTCTTGTTAGTAAGCCTCC
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Coding sequence (CDS) from alignment at chr10:374934..376354-

>NO10G01270.1 ID=NO10G01270.1|Name=NO10G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr10:374934..376354- (Nannochloropsis oceanica)
ATGGGGCCCTTTCGCGAAAGTCCAAAACGAGCCGACATGTCGGCGCCATT
AACAACAATTACGACGCCAATCACGAAGAGGAAGCGGGGCCGGCCGGAAC
ACCAGAAGACATGGCTTCAAGAATTCTTGCTCGGCGGCGTCTCGACAAGT
GTGGCATGCCTATTCAGCAACCCGTTTGATGTGCTCAAGGTACGAATGCA
ACTCCAAGGTGAACTCAAGAGCAAAGGCACCTACCAAGTCCACTACCGTA
ACTTCCTCCATGCCGCTTGGACCATTATGCGGGTCGAGGGCATCCTGGCC
TTACAAAAGGGATTGGGACCCGCGATCCTTTACCAATTTGTAATGAACGG
GGTAAGGCTGGGCACGTTCCAAACGCTCGTCAACCGCGGAGTGACCGCCG
ATAACGAAATGAGGACGAGAGAACAAGGAGGACATACTCGTAGCATGAGA
ACCATGAGTAGTGGCAGCTCCAATAGCAGTAGTAGTGGCATTAGTAGCAA
CAGTGGTGGCGGCAAGCTGGCCCGCTCCGCATTGGCTGGAGCATTGGGTG
GAGCTTTGGGTGGGGTTGTGGGTAGTCCCCTCTACCTCGTCAAAACGCAA
TTACAATCACGCGCACTACAAGCTATTGCTGTTGGACATCAACATCACCA
TACCTCGACTTATCAGGCCTTAAGAGAAATACACATGCAACATGGTTACA
GAGGCTTGTGGCGAGGGGTGGAGGGAGCGGTGCCGCGACTGATGCTGGGA
TCCGCATTGCAGCTGTCTACCTTTTCGTATATCAAAGAGGCGGTTCGGAA
GTGGGGATGGGTGGATGAGGGATGGGTCCCTGTACTGGCATCATTACTTT
CGAGCGTGAATATCATTTTGTTTATGGAGCCATTGGATGTGGTGAGGACG
CGGCTGTATAATCAGCCAACGGATGAAAGAGGAAGGGGAATTTATTACAG
GGGGTTTGTGGATTGTTTTACAAGGGTGGTGGAAAAAGAAGGATTCTTCC
ATGGAATGTACAAGGGGGCGGGGGCTGCATACTTCAGGATGGCACCGCAG
GCGATCCTTGGGCTGAGTTTCTGGGACTCGTTCAGGAGGATCTGGTATGG
CAGGGGGTTCGGGAGGAATGGGAATGAAGAGATGGAGGAGTGA
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Synonyms
Publications