NO10G01170.1, NO10G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01170.1
Unique NameNO10G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1468
Alignment locationchr10:348002..349732 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:348002..349732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01170.1 vs.
Match: EWM25347.1 (diacylglycerol cholinephosphotransferase [Nannochloropsis gaditana])

HSP 1 Score: 571.6 bits (1472), Expect = 1.900e-159
Identity = 282/395 (71.39%), Postives = 330/395 (83.54%), Query Frame = 0 
Query:    6 WGLFDNEGADALRNYKYVGVDNSLAYKHALSPFAEYMVVNFVPIWIAPNLITLLGLTFPLVSLGIFAWHSPHFKTEPPAWTFFFNAFALFAYQTLDNMDGKQARRTNSSNALGMVFDHGCDAINAGIGAINLLVVLGIVSSGEWDAFLVLSAFASPFVPFYVATWEEYYTGALVLPIINGPAEGVLMGVFISILSGFLGSAWWIKEHKFLLALEWMPLKRPGDLVGCFSLVGVIVTCISQIVNVMVLQFKKGRSLLHPLRDLLPFVFLAIGTHVLVVTKHAFLTEAPLLTMGAVSSIFVEQVVSLMLAHMTHSPYIPYHRTLLPPFLGFVAMMSIE-WLAPVKEGLDAVEGRLWGLWQGHFAIVFGYTALYLVLVVADLSRVLGVRPFTIADIGG 400
            W LFD++GA+ALR YKYVGVDNSL YK+ALSP AEY+V   +P W+APNLITLLGL FPL+SL IFA +SPHF+TEPPAWTFFFNAFALFAYQTLDNMDGKQARRT SSNALGMVFDHGCDAINAGIGAINLLVVLG++SSG W+ FLVLSA A+PF+PFYVATWEEYY GAL+LP++NGPAEGVL+GV  S++SG  GSAWW KEH  LLAL+W+P+ RPG+ VG FSLV +++TC+ QI NV++LQ +KGRS++ PL DLLPF  LA G  +L+ T+H  L EAPLLT+G +++IFVEQVVSLMLAHMTHS Y+PYHRTLLP FL FVA++S+E W A     L A   RLW LW  HF +VF YTALYLVL+VA+LSRVL VRPF I D GG
Sbjct:    6 WILFDDKGAEALRQYKYVGVDNSLTYKYALSPLAEYVVQTCIPRWMAPNLITLLGLLFPLISLCIFACYSPHFRTEPPAWTFFFNAFALFAYQTLDNMDGKQARRTQSSNALGMVFDHGCDAINAGIGAINLLVVLGLMSSGMWEPFLVLSAVATPFLPFYVATWEEYYVGALILPVVNGPAEGVLLGVMFSLISGLCGSAWWGKEHASLLALDWLPVTRPGEAVGWFSLVSIVLTCLCQIGNVLLLQHRKGRSIVQPLLDLLPFAALAGGASLLIATEHELLIEAPLLTLGTIAAIFVEQVVSLMLAHMTHSLYVPYHRTLLPAFLLFVALVSLESWEALKGRALSA--ERLWTLWHAHFLVVFAYTALYLVLIVAELSRVLEVRPFRIKDRGG 398
The following BLAST results are available for this feature:
BLAST of NO10G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25347.11.900e-15971.39diacylglycerol cholinephosphotransferase [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01170NO10G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01170.1NO10G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01170.1.cds1NO10G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01170.1.cds2NO10G01170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01170.1 ID=NO10G01170.1|Name=NO10G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp
ACAGGGCAAATCATGCGCAGCAAGTGTTGGGGACTGTTTGACAACGAAGG
TGCCGATGCCCTCCGCAACTACAAATACGTGGGGGTGGACAACTCTTTGG
CTTACAAGCATGCCCTTTCCCCTTTTGCCGAGTACATGGTCGTAAACTTC
GTTCCTATTTGGATAGCCCCCAACCTCATCACTCTTCTCGGCCTCACCTT
CCCTCTGGTCTCCTTGGGCATCTTTGCTTGGCACTCCCCGCACTTCAAGA
CGGAGCCTCCCGCCTGGACGTTCTTCTTCAATGCCTTTGCTTTGTTCGCG
TATCAGACATTGGACAACATGGATGGGAAACAAGCCCGGCGGACAAATAG
CAGTAACGCTCTTGGTATGGTATTTGATCACGGGTGTGACGCTATAAACG
CTGGGATTGGCGCGATTAATTTGTTGGTGGTTCTAGGGATAGTTTCCTCA
GGGGAATGGGATGCCTTTTTGGTCTTATCAGCATTTGCAAGTCCCTTCGT
CCCCTTCTACGTGGCGACCTGGGAAGAATATTACACCGGTGCCTTGGTCT
TGCCAATCATTAATGGCCCGGCGGAGGGCGTCTTGATGGGGGTGTTTATT
TCCATTCTCTCCGGGTTTCTGGGTTCCGCGTGGTGGATAAAGGAACATAA
ATTCCTATTAGCCCTGGAATGGATGCCTCTCAAAAGACCAGGGGATCTGG
TCGGATGTTTCAGCCTGGTTGGTGTGATCGTCACCTGTATCTCGCAAATC
GTCAACGTCATGGTTCTTCAATTCAAAAAAGGCCGTTCGCTCCTCCATCC
CCTGCGAGACCTCCTTCCCTTTGTATTCTTGGCCATTGGAACCCACGTAT
TGGTTGTCACCAAACACGCGTTTCTTACCGAAGCCCCTTTGCTGACCATG
GGCGCTGTTTCCTCTATTTTTGTCGAGCAAGTCGTGTCCCTTATGCTGGC
CCATATGACTCACTCCCCGTACATCCCTTACCACCGCACCCTCCTCCCTC
CATTCCTCGGCTTCGTGGCCATGATGAGCATTGAGTGGCTCGCACCAGTC
AAGGAGGGACTAGATGCTGTTGAAGGGAGGCTTTGGGGCTTGTGGCAAGG
ACATTTTGCGATAGTGTTTGGGTATACTGCCTTGTATTTGGTGTTGGTAG
TGGCGGATTTGAGCAGGGTTTTGGGGGTACGACCGTTCACGATTGCCGAC
ATAGGAGGGGTAGTAGGTGTAGGAAATGGAAGCAAGAAGCGGCGTTAGAT
TGATCGGGAATTGGTGTGAGAGAAGGAAGGGTCAGGGAGGGAGAGAAGGG
GAGGGAGGAAGAGGGAGTAGACTGGAGAGTGCATGTGTTTTAGAAACGGG
AGGTGAGAAGGATGTCCATTTTGAAGATTAGAGCAGCAACTGTACGGCAT
GAAGGCGCGACAACAACGACAACAACAGAAACACACAACAAAGCGACAGA
AGGAAAGCACGTCGGGAT
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protein sequence of NO10G01170.1

>NO10G01170.1-protein ID=NO10G01170.1-protein|Name=NO10G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MRSKCWGLFDNEGADALRNYKYVGVDNSLAYKHALSPFAEYMVVNFVPIW
IAPNLITLLGLTFPLVSLGIFAWHSPHFKTEPPAWTFFFNAFALFAYQTL
DNMDGKQARRTNSSNALGMVFDHGCDAINAGIGAINLLVVLGIVSSGEWD
AFLVLSAFASPFVPFYVATWEEYYTGALVLPIINGPAEGVLMGVFISILS
GFLGSAWWIKEHKFLLALEWMPLKRPGDLVGCFSLVGVIVTCISQIVNVM
VLQFKKGRSLLHPLRDLLPFVFLAIGTHVLVVTKHAFLTEAPLLTMGAVS
SIFVEQVVSLMLAHMTHSPYIPYHRTLLPPFLGFVAMMSIEWLAPVKEGL
DAVEGRLWGLWQGHFAIVFGYTALYLVLVVADLSRVLGVRPFTIADIGGV
VGVGNGSKKRR*
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mRNA from alignment at chr10:348002..349732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01170.1 ID=NO10G01170.1|Name=NO10G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at chr10:348002..349732- (Nannochloropsis oceanica)
ACAGGGCAAATCATGCGCAGCAAGTGTTGGGGACTGTTTGACAACGAAGG
TGCCGATGCCCTCCGCAACTACAAATACGTGGGGGTGGACAACTCTTTGG
CTTACAAGTAAGTCTTGGTTGGTCGATAGAGGAGGAGGATGGAAGGAGAG
GGGGAGGGTCGGGAGTAGAGCATCGCACAGGTCAACCAGAAATTTGCTTG
GATTACAAAACGCGGCTGCTATCTTTCTCATCAACATCGGTTTACCATGC
ATGACACCACCCTCTTTTTACTTTTGTATGCCGTCACGCTCGGGCCCCCA
GTCCTAGATGAACCCAACTTCTATTCGCACACCTCTCATCCACTCCCAAC
CCCGTTTCCCCCCGAAACAGGCATGCCCTTTCCCCTTTTGCCGAGTACAT
GGTCGTAAACTTCGTTCCTATTTGGATAGCCCCCAACCTCATCACTCTTC
TCGGCCTCACCTTCCCTCTGGTCTCCTTGGGCATCTTTGCTTGGCACTCC
CCGCACTTCAAGACGGAGCCTCCCGCCTGGACGTTCTTCTTCAATGCCTT
TGCTTTGTTCGCGTATCAGACATTGGACAACATGGATGGGAAACAAGCCC
GGCGGACAAATAGCAGTAACGCTCTTGGTATGGTATTTGATCACGGGTGT
GACGCTATAAACGCTGGGATTGGCGCGATTAATTTGTTGGTGGTTCTAGG
GATAGTTTCCTCAGGGGAATGGGATGCCTTTTTGGTCTTATCAGCATTTG
CAAGTCCCTTCGTCCCCTTCTACGTGGCGACCTGGGAAGAATATTACACC
GGTGCCTTGGTCTTGCCAATCATTAATGGCCCGGCGGAGGGCGTCTTGAT
GGGGGTGTTTATTTCCATTCTCTCCGGGTTTCTGGGTTCCGCGTGGTGGA
TAAAGGAACATAAATTCCTATTAGCCCTGGAATGGATGCCTCTCAAAAGA
CCAGGGGATCTGGTCGGATGTTTCAGCCTGGTTGGTGTGATCGTCACCTG
TATCTCGCAAATCGTCAACGTCATGGTTCTTCAATTCAAAAAAGGCCGTT
CGCTCCTCCATCCCCTGCGAGACCTCCTTCCCTTTGTATTCTTGGCCATT
GGAACCCACGTATTGGTTGTCACCAAACACGCGTTTCTTACCGAAGCCCC
TTTGCTGACCATGGGCGCTGTTTCCTCTATTTTTGTCGAGCAAGTCGTGT
CCCTTATGCTGGCCCATATGACTCACTCCCCGTACATCCCTTACCACCGC
ACCCTCCTCCCTCCATTCCTCGGCTTCGTGGCCATGATGAGCATTGAGTG
GCTCGCACCAGTCAAGGAGGGACTAGATGCTGTTGAAGGGAGGCTTTGGG
GCTTGTGGCAAGGACATTTTGCGATAGTGTTTGGGTATACTGCCTTGTAT
TTGGTGTTGGTAGTGGCGGATTTGAGCAGGGTTTTGGGGGTACGACCGTT
CACGATTGCCGACATAGGAGGGGTAGTAGGTGTAGGAAATGGAAGCAAGA
AGCGGCGTTAGATTGATCGGGAATTGGTGTGAGAGAAGGAAGGGTCAGGG
AGGGAGAGAAGGGGAGGGAGGAAGAGGGAGTAGACTGGAGAGTGCATGTG
TTTTAGAAACGGGAGGTGAGAAGGATGTCCATTTTGAAGATTAGAGCAGC
AACTGTACGGCATGAAGGCGCGACAACAACGACAACAACAGAAACACACA
ACAAAGCGACAGAAGGAAAGCACGTCGGGAT
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Coding sequence (CDS) from alignment at chr10:348002..349732-

>NO10G01170.1 ID=NO10G01170.1|Name=NO10G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr10:348002..349732- (Nannochloropsis oceanica)
ATGCGCAGCAAGTGTTGGGGACTGTTTGACAACGAAGGTGCCGATGCCCT
CCGCAACTACAAATACGTGGGGGTGGACAACTCTTTGGCTTACAAGCATG
CCCTTTCCCCTTTTGCCGAGTACATGGTCGTAAACTTCGTTCCTATTTGG
ATAGCCCCCAACCTCATCACTCTTCTCGGCCTCACCTTCCCTCTGGTCTC
CTTGGGCATCTTTGCTTGGCACTCCCCGCACTTCAAGACGGAGCCTCCCG
CCTGGACGTTCTTCTTCAATGCCTTTGCTTTGTTCGCGTATCAGACATTG
GACAACATGGATGGGAAACAAGCCCGGCGGACAAATAGCAGTAACGCTCT
TGGTATGGTATTTGATCACGGGTGTGACGCTATAAACGCTGGGATTGGCG
CGATTAATTTGTTGGTGGTTCTAGGGATAGTTTCCTCAGGGGAATGGGAT
GCCTTTTTGGTCTTATCAGCATTTGCAAGTCCCTTCGTCCCCTTCTACGT
GGCGACCTGGGAAGAATATTACACCGGTGCCTTGGTCTTGCCAATCATTA
ATGGCCCGGCGGAGGGCGTCTTGATGGGGGTGTTTATTTCCATTCTCTCC
GGGTTTCTGGGTTCCGCGTGGTGGATAAAGGAACATAAATTCCTATTAGC
CCTGGAATGGATGCCTCTCAAAAGACCAGGGGATCTGGTCGGATGTTTCA
GCCTGGTTGGTGTGATCGTCACCTGTATCTCGCAAATCGTCAACGTCATG
GTTCTTCAATTCAAAAAAGGCCGTTCGCTCCTCCATCCCCTGCGAGACCT
CCTTCCCTTTGTATTCTTGGCCATTGGAACCCACGTATTGGTTGTCACCA
AACACGCGTTTCTTACCGAAGCCCCTTTGCTGACCATGGGCGCTGTTTCC
TCTATTTTTGTCGAGCAAGTCGTGTCCCTTATGCTGGCCCATATGACTCA
CTCCCCGTACATCCCTTACCACCGCACCCTCCTCCCTCCATTCCTCGGCT
TCGTGGCCATGATGAGCATTGAGTGGCTCGCACCAGTCAAGGAGGGACTA
GATGCTGTTGAAGGGAGGCTTTGGGGCTTGTGGCAAGGACATTTTGCGAT
AGTGTTTGGGTATACTGCCTTGTATTTGGTGTTGGTAGTGGCGGATTTGA
GCAGGGTTTTGGGGGTACGACCGTTCACGATTGCCGACATAGGAGGGGTA
GTAGGTGTAGGAAATGGAAGCAAGAAGCGGCGTTAG
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Synonyms
Publications