NO10G01140.1, NO10G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01140.1
Unique NameNO10G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr10:343090..344894 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:343090..344894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01140.1 vs.
Match: EWM25456.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 547.4 bits (1409), Expect = 5.200e-152
Identity = 312/539 (57.88%), Postives = 381/539 (70.69%), Query Frame = 0 
Query:   11 MPPRPIYTATKGDLLLELSQKAALRPWLAKLGLPTPVQLDRGTQTCFSSPPLAGRPITLVGPQNA----AAGTIDALSIIFTQKLGAKLSGPSSSN-VLVDTTWVRSPADVSTLAMQVLQPLAARRLKHGRIVLLSSHMPGDVMSTSLSSGLASLVRSFAKEMGPTGTNVNIVNMRGSFHSTSSLSTSFLSSPFSLSPSPDSLALVAWPLAFLLLPDAAFITGQEFIINVGTSSTATAATDTTAAMSRWLENLPPSSSTSSSSSSSSFSSSSKEGLLNGKSCLVTGSSRGIGEAITLRLAREGARVIGVDLPGTSTQLQALMDRVGGVGLPLDLTVEGVEERLKELVRKEGNGGKIDCLVHNAGLTKDKTLRRMTPEQFHQVVKVNLEAVLNINKAFGLAYQDEQEGGAIGQ-DEEFLNPGGRIVLLSSINGIAGGFGQTNYSFTKAALSSYAQSLAPILASRGPSGSTINAIAPGFIETDMTQSIPALGKFLGRRANAFSQGGLADDVAAVVAFLCCDGSGGMSGQTLRVCGLNAVGK 544
            MPPR  + A K D  L+LSQ   LRPWL+K GLPTPV LDRGT+  F+ PPLAG  + ++G Q+     A  TI  L+ + + KLGA +    + N VLVD TWVRSP DVS+LA+  L+ LAAR+LKHGRIV+LSS+ P D++S SLSSGLASLVRS AKEMG TGT VN+V +R               +PF+L  S  + A +AWPLAFLLL ++AFI+GQ+  + +G  S+             WLE+L   +  +++ +S + S +++  LL GK+CLVTG SRGIG AI  RLA EGARV+GVD+PG   +L ALM+ VGG     DL  EG E RL++ V  E   GK+DCL+HNAG+T+D+TLRRMT E+F QVVKVNLEAVL IN+AFGL      EGG   Q     LNP GRIVLLSSINGIAG FGQTNYSFTKAALS YA +LA +L++RGP G TINAIAPGFIETDMT+ +P LGKFLGRRANA SQGG  +D+AA  AFLCC+GSGG+SGQTLRVCGLNAVGK
Sbjct:    1 MPPRQQFQAFKDDFFLKLSQNNILRPWLSKFGLPTPVLLDRGTRNHFAVPPLAGCSVAVIGKQSGDSSHAHQTIKILTQLMSTKLGASVECQENCNKVLVDATWVRSPLDVSSLALHSLRSLAARKLKHGRIVILSSYTPSDILSASLSSGLASLVRSLAKEMGGTGTTVNMVVVR--------------VAPFTL--SSQTFASIAWPLAFLLLHESAFISGQKITVELGAGSSGD--------FCAWLESL---TGAANNDTSRTLSPAAEGKLLIGKTCLVTGCSRGIGAAIATRLAAEGARVLGVDVPGACQRLTALMEEVGGTAFSQDLAEEGAERRLRDFVLAEAPAGKLDCLIHNAGVTRDRTLRRMTAEEFEQVVKVNLEAVLRINEAFGL--PSHTEGGTKSQLGPVLLNPLGRIVLLSSINGIAGAFGQTNYSFTKAALSGYAHALATVLSTRGPPGITINAIAPGFIETDMTRRMPTLGKFLGRRANALSQGGYPEDIAAATAFLCCEGSGGVSGQTLRVCGLNAVGK 510
The following BLAST results are available for this feature:
BLAST of NO10G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25456.15.200e-15257.88short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01140NO10G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01140.1NO10G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01140.1.cds1NO10G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01140.1.cds2NO10G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01140.1 ID=NO10G01140.1|Name=NO10G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
ATGCGACTACCTGTACCAAAGTCGCTTCCCATGCCCCCACGACCAATTTA
CACCGCCACAAAAGGCGACCTGTTGCTGGAGCTTTCGCAGAAGGCCGCGC
TAAGACCCTGGCTTGCCAAGCTGGGCCTACCGACGCCTGTTCAACTCGAT
CGAGGCACCCAGACTTGTTTTAGCTCGCCGCCTCTTGCAGGACGTCCAAT
CACACTTGTCGGACCGCAGAATGCAGCAGCAGGCACTATTGATGCCCTGT
CCATCATCTTCACTCAAAAACTCGGCGCAAAGCTTAGTGGACCATCCAGC
TCCAACGTGCTCGTGGACACGACATGGGTGCGCTCGCCCGCGGACGTCTC
CACATTGGCGATGCAGGTTCTCCAACCTCTTGCAGCTCGTAGGCTCAAGC
ATGGGCGGATTGTGCTTCTTTCTTCACATATGCCAGGGGACGTCATGTCT
ACCTCTTTATCCTCGGGGCTCGCATCACTAGTACGGTCATTTGCCAAAGA
AATGGGGCCAACCGGAACCAATGTCAACATTGTGAATATGCGAGGATCTT
TCCATTCCACCTCGTCGTTGTCCACCTCCTTTCTCTCCTCTCCCTTCTCC
CTCTCTCCTTCTCCGGACTCCCTCGCCCTCGTCGCCTGGCCTTTGGCCTT
CCTCCTCCTTCCCGACGCGGCATTTATCACCGGGCAAGAATTCATAATAA
ACGTTGGTACGTCCTCTACCGCCACTGCGGCGACTGATACTACTGCAGCC
ATGTCTCGGTGGCTTGAGAACCTACCTCCTTCTTCTTCCACTTCCTCCTC
TTCCTCCTCCTCCTCTTTCTCCTCCTCATCAAAAGAAGGGCTCCTAAACG
GCAAAAGCTGCCTTGTCACTGGGAGCAGTCGTGGAATCGGCGAAGCCATC
ACTTTACGCCTGGCCAGGGAGGGTGCGCGGGTTATAGGTGTGGACTTGCC
TGGTACCTCCACTCAGTTACAAGCGCTGATGGACCGTGTGGGAGGGGTGG
GATTGCCGTTGGATTTAACAGTTGAAGGCGTTGAGGAGAGGCTGAAAGAG
TTAGTGAGGAAGGAAGGGAATGGAGGGAAGATTGACTGTCTTGTCCATAA
CGCGGGGTTGACGAAAGATAAAACGTTGAGGCGAATGACGCCCGAGCAAT
TCCATCAAGTAGTCAAAGTCAACCTCGAAGCAGTCTTGAATATCAACAAA
GCCTTCGGTTTGGCCTACCAGGACGAGCAGGAGGGAGGGGCGATCGGCCA
GGACGAAGAATTTCTCAATCCTGGAGGACGCATCGTCCTCCTTTCCTCCA
TTAATGGCATTGCGGGGGGGTTCGGGCAAACCAACTACTCATTTACCAAA
GCTGCTCTCTCCTCGTACGCCCAGTCACTCGCTCCCATCTTAGCCTCCCG
CGGGCCTTCCGGCTCCACTATCAATGCCATCGCCCCTGGTTTCATCGAGA
CAGACATGACGCAGAGCATACCTGCCTTGGGAAAGTTCTTGGGAAGGAGG
GCGAATGCCTTTTCACAGGGGGGGTTGGCGGATGATGTTGCGGCCGTGGT
GGCGTTCTTGTGCTGTGACGGGAGTGGGGGAATGAGCGGGCAGACGTTGA
GGGTGTGTGGGCTAAATGCGGTTGGAAAGTAA
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protein sequence of NO10G01140.1

>NO10G01140.1-protein ID=NO10G01140.1-protein|Name=NO10G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MRLPVPKSLPMPPRPIYTATKGDLLLELSQKAALRPWLAKLGLPTPVQLD
RGTQTCFSSPPLAGRPITLVGPQNAAAGTIDALSIIFTQKLGAKLSGPSS
SNVLVDTTWVRSPADVSTLAMQVLQPLAARRLKHGRIVLLSSHMPGDVMS
TSLSSGLASLVRSFAKEMGPTGTNVNIVNMRGSFHSTSSLSTSFLSSPFS
LSPSPDSLALVAWPLAFLLLPDAAFITGQEFIINVGTSSTATAATDTTAA
MSRWLENLPPSSSTSSSSSSSSFSSSSKEGLLNGKSCLVTGSSRGIGEAI
TLRLAREGARVIGVDLPGTSTQLQALMDRVGGVGLPLDLTVEGVEERLKE
LVRKEGNGGKIDCLVHNAGLTKDKTLRRMTPEQFHQVVKVNLEAVLNINK
AFGLAYQDEQEGGAIGQDEEFLNPGGRIVLLSSINGIAGGFGQTNYSFTK
AALSSYAQSLAPILASRGPSGSTINAIAPGFIETDMTQSIPALGKFLGRR
ANAFSQGGLADDVAAVVAFLCCDGSGGMSGQTLRVCGLNAVGK*
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mRNA from alignment at chr10:343090..344894+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01140.1 ID=NO10G01140.1|Name=NO10G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1805bp|location=Sequence derived from alignment at chr10:343090..344894+ (Nannochloropsis oceanica)
ATGGTGCGTGTGGTAAGGGGCTTGTGAGTAAGCAGTGAGGTGGCATCGTT
GACGAAAGGTCGAAGCCCGTTACCCAGACCATCTTCGCTCTGAGAGAGCA
TATAGTAATAATAGCATCATAGTGGCTTCATCAAGTGTACATATCCTGAC
CATAGACTCTTTTACAATAATCACAGCGACTACCTGTACCAAAGTCGCTT
CCCATGCCCCCACGACCAATTTACACCGCCACAAAAGGCGACCTGTTGCT
GGAGCTTTCGCAGAAGGCCGCGCTAAGACCCTGGCTTGCCAAGCTGGGCC
TACCGACGCCTGTTCAACTCGATCGAGGCACCCAGACTTGTTTTAGCTCG
CCGCCTCTTGCAGGACGTCCAATCACACTTGTCGGACCGCAGAATGCAGC
AGCAGGCACTATTGATGCCCTGTCCATCATCTTCACTCAAAAACTCGGCG
CAAAGCTTAGTGGACCATCCAGCTCCAACGTGCTCGTGGACACGACATGG
GTGCGCTCGCCCGCGGACGTCTCCACATTGGCGATGCAGGTTCTCCAACC
TCTTGCAGCTCGTAGGCTCAAGCATGGGCGGATTGTGCTTCTTTCTTCAC
ATATGCCAGGGGACGTCATGTCTACCTCTTTATCCTCGGGGCTCGCATCA
CTAGTACGGTCATTTGCCAAAGAAATGGGGCCAACCGGAACCAATGTCAA
CATTGTGAATATGCGAGGATCTTTCCATTCCACCTCGTCGTTGTCCACCT
CCTTTCTCTCCTCTCCCTTCTCCCTCTCTCCTTCTCCGGACTCCCTCGCC
CTCGTCGCCTGGCCTTTGGCCTTCCTCCTCCTTCCCGACGCGGCATTTAT
CACCGGGCAAGAATTCATAATAAACGTTGGTACGTCCTCTACCGCCACTG
CGGCGACTGATACTACTGCAGCCATGTCTCGGTGGCTTGAGAACCTACCT
CCTTCTTCTTCCACTTCCTCCTCTTCCTCCTCCTCCTCTTTCTCCTCCTC
ATCAAAAGAAGGGCTCCTAAACGGCAAAAGCTGCCTTGTCACTGGGAGCA
GTCGTGGAATCGGCGAAGCCATCACTTTACGCCTGGCCAGGGAGGGTGCG
CGGGTTATAGGTGTGGACTTGCCTGGTACCTCCACTCAGTTACAAGCGCT
GATGGACCGTGTGGGAGGGGTGGGATTGCCGTTGGATTTAACAGTTGAAG
GCGTTGAGGAGAGGCTGAAAGAGTTAGTGAGGAAGGAAGGGAATGGAGGG
AAGATTGACTGTCTTGTCCATAACGCGGGGTTGACGAAAGATAAAACGTT
GAGGCGAATGACGCCCGAGCAATTCCATCAAGTAGTCAAAGTCAACCTCG
AAGCAGTCTTGAATATCAACAAAGCCTTCGGTTTGGCCTACCAGGACGAG
CAGGAGGGAGGGGCGATCGGCCAGGACGAAGAATTTCTCAATCCTGGAGG
ACGCATCGTCCTCCTTTCCTCCATTAATGGCATTGCGGGGGGGTTCGGGC
AAACCAACTACTCATTTACCAAAGCTGCTCTCTCCTCGTACGCCCAGTCA
CTCGCTCCCATCTTAGCCTCCCGCGGGCCTTCCGGCTCCACTATCAATGC
CATCGCCCCTGGTTTCATCGAGACAGACATGACGCAGAGCATACCTGCCT
TGGGAAAGTTCTTGGGAAGGAGGGCGAATGCCTTTTCACAGGGGGGGTTG
GCGGATGATGTTGCGGCCGTGGTGGCGTTCTTGTGCTGTGACGGGAGTGG
GGGAATGAGCGGGCAGACGTTGAGGGTGTGTGGGCTAAATGCGGTTGGAA
AGTAA
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Coding sequence (CDS) from alignment at chr10:343090..344894+

>NO10G01140.1 ID=NO10G01140.1|Name=NO10G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr10:343090..344894+ (Nannochloropsis oceanica)
ATGCGACTACCTGTACCAAAGTCGCTTCCCATGCCCCCACGACCAATTTA
CACCGCCACAAAAGGCGACCTGTTGCTGGAGCTTTCGCAGAAGGCCGCGC
TAAGACCCTGGCTTGCCAAGCTGGGCCTACCGACGCCTGTTCAACTCGAT
CGAGGCACCCAGACTTGTTTTAGCTCGCCGCCTCTTGCAGGACGTCCAAT
CACACTTGTCGGACCGCAGAATGCAGCAGCAGGCACTATTGATGCCCTGT
CCATCATCTTCACTCAAAAACTCGGCGCAAAGCTTAGTGGACCATCCAGC
TCCAACGTGCTCGTGGACACGACATGGGTGCGCTCGCCCGCGGACGTCTC
CACATTGGCGATGCAGGTTCTCCAACCTCTTGCAGCTCGTAGGCTCAAGC
ATGGGCGGATTGTGCTTCTTTCTTCACATATGCCAGGGGACGTCATGTCT
ACCTCTTTATCCTCGGGGCTCGCATCACTAGTACGGTCATTTGCCAAAGA
AATGGGGCCAACCGGAACCAATGTCAACATTGTGAATATGCGAGGATCTT
TCCATTCCACCTCGTCGTTGTCCACCTCCTTTCTCTCCTCTCCCTTCTCC
CTCTCTCCTTCTCCGGACTCCCTCGCCCTCGTCGCCTGGCCTTTGGCCTT
CCTCCTCCTTCCCGACGCGGCATTTATCACCGGGCAAGAATTCATAATAA
ACGTTGGTACGTCCTCTACCGCCACTGCGGCGACTGATACTACTGCAGCC
ATGTCTCGGTGGCTTGAGAACCTACCTCCTTCTTCTTCCACTTCCTCCTC
TTCCTCCTCCTCCTCTTTCTCCTCCTCATCAAAAGAAGGGCTCCTAAACG
GCAAAAGCTGCCTTGTCACTGGGAGCAGTCGTGGAATCGGCGAAGCCATC
ACTTTACGCCTGGCCAGGGAGGGTGCGCGGGTTATAGGTGTGGACTTGCC
TGGTACCTCCACTCAGTTACAAGCGCTGATGGACCGTGTGGGAGGGGTGG
GATTGCCGTTGGATTTAACAGTTGAAGGCGTTGAGGAGAGGCTGAAAGAG
TTAGTGAGGAAGGAAGGGAATGGAGGGAAGATTGACTGTCTTGTCCATAA
CGCGGGGTTGACGAAAGATAAAACGTTGAGGCGAATGACGCCCGAGCAAT
TCCATCAAGTAGTCAAAGTCAACCTCGAAGCAGTCTTGAATATCAACAAA
GCCTTCGGTTTGGCCTACCAGGACGAGCAGGAGGGAGGGGCGATCGGCCA
GGACGAAGAATTTCTCAATCCTGGAGGACGCATCGTCCTCCTTTCCTCCA
TTAATGGCATTGCGGGGGGGTTCGGGCAAACCAACTACTCATTTACCAAA
GCTGCTCTCTCCTCGTACGCCCAGTCACTCGCTCCCATCTTAGCCTCCCG
CGGGCCTTCCGGCTCCACTATCAATGCCATCGCCCCTGGTTTCATCGAGA
CAGACATGACGCAGAGCATACCTGCCTTGGGAAAGTTCTTGGGAAGGAGG
GCGAATGCCTTTTCACAGGGGGGGTTGGCGGATGATGTTGCGGCCGTGGT
GGCGTTCTTGTGCTGTGACGGGAGTGGGGGAATGAGCGGGCAGACGTTGA
GGGTGTGTGGGCTAAATGCGGTTGGAAAGTAA
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Synonyms
Publications