NO10G00840.1, NO10G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00840.1
Unique NameNO10G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3188
Alignment locationchr10:272980..276414 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:272980..276414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00840.1 vs.
Match: EWM25307.1 (uncharacterized protein Naga_100135g15 [Nannochloropsis gaditana])

HSP 1 Score: 468.8 bits (1205), Expect = 1.400e-128
Identity = 236/314 (75.16%), Postives = 275/314 (87.58%), Query Frame = 0 
Query:    1 MKGAFAVTALVLATA---SFQGADAFVGSSFKARRHALPRLHARKPDQVFNTKESFAPIIPGLSVSPDLLDVKEMAKATAFMAPLVLGASDAMAKGGEYGVLEGRTFAFVHPTVMGILFLTTAYTGYLGWQWRSIRTLAGDINALKEALPKLSDGSKVTMPVAKQIASVEGVLKSMGEGDEEAAQLKADLSVLRSATVKEIDAQVAELSERRKALLSGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRAGKLFPGPHLYAGAGITALWAAAAALVPAMQKGNDTARSLHIGLNALNMALFAWQVGTGLEIAIK 312
            M+G +A+ A+ + T    S Q  DAF+G+  KAR  +L R+HA+KP  VF+TKESFAP IPGL VSP+ LD+K +A+   F+APLVLGASDAMAKGGEYG+LEGR+FAFVHP VMG LFLTTAYTGYLGWQ+R+IRTLAG+++ALK++LPKLSDGSKVT+PV+KQIASVE  LK+MGEGDEEA QLKADL++LRS  V  +D Q+A LSE+RK LL+GDFRDRHYNTASTLLGLGVFTSILGGFNTFFR+GKLFPGPHLYAGAGIT LWA AA++VPAMQKGN+TARSLHIGLNALN+ALFAWQVGTGLEIAIK
Sbjct:    1 MRGTYAMAAVTVVTTACFSLQRVDAFIGAGVKARLPSLSRVHAQKPYHVFDTKESFAPTIPGLPVSPEALDLKTIAQGVTFVAPLVLGASDAMAKGGEYGILEGRSFAFVHPIVMGALFLTTAYTGYLGWQFRTIRTLAGEMSALKDSLPKLSDGSKVTLPVSKQIASVESALKNMGEGDEEAKQLKADLNLLRSPGVAVLDTQMAALSEKRKTLLAGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRSGKLFPGPHLYAGAGITVLWAVAASMVPAMQKGNETARSLHIGLNALNLALFAWQVGTGLEIAIK 314
The following BLAST results are available for this feature:
BLAST of NO10G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25307.11.400e-12875.16uncharacterized protein Naga_100135g15 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00840NO10G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00840.1NO10G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00840.1.cds1NO10G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00840.1.cds2NO10G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00840.1 ID=NO10G00840.1|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3188bp
CTCCTCCTCCTCCTCCTCCTCCTTTTCCTTCTCCTCGTCTGACCAAGACA
ACCGTACCCGCTTCTTCTTCTCCTTCTCCTCTTTCATCTTCCTCTCCCTC
CCCCTCCCCCCTCTCCTCCCTCCGGCCACGTTCCTCATCACCGCCTTGCC
AGCCCTCGAAAACGGCAACAGTAACTTCCCGTCCTCATCGGAATTCCGAA
CCCTCGCAAATACCCTCCTCCTCATCTCCTCCTCCTCATCCTCCCCCCCC
TCTCCTTCTTCTCCTCCTCCTCTCCCTCCATCTCCCTCGCTTGCAACGTC
AGGGCGAGCTGTGCATCTGCTTGGAGACGCAGTGCCCGCAGGCCTTCTTC
ATTCTCCAGCGTCAACTCGCCCTGGAACTCATCAATGTGGTCCCTGACAA
AATGCATGGTCTAGTATGTCAACGCGTGTGTATTCGCATGAGTCAATTAC
CAACATAGCACTCTTCAGCGTTTCGTTCTCCGTCCCTCCGTCCCTCCGTC
CCTCCGCCCCTCCGTCTCTCCCCCTCCTTTACACTCACCATGATCCGTCT
AGTACTATGCATTTTCCCGCAACATAAACACGTTAGCCTAGGATTACCAC
CTTTGACATCACCACTTGCGCTACTGTTGCTACTGCTACTGCTGGTAAGT
CCTGCGCCCCATACTTCATCGGAAGTGACGAACTCATTGAAAAGGGACAA
GGCGAACGCCTCCCGAGCCCGTAAATGGTTGTCGTCCTCGTTGTCGTCGT
CGTCTTCCTCCTTCCTCCATGCTGCTGCTTCCCGCATTATTTTGCTGGTG
CTGATGCGGAGGGGTTGTGACGTAGTCGAGACTGAGAAGGAGGGGGAGGA
GGAGGTGGAGATGGGGGGAGAAGGAGGAGAAGGAGGGGCGGGGGCCGGCA
TCTTTCGGTCTTCGTACACCAAGTCAGTGAGGTCACTGTTGCCCTTCTCC
TCGTTCTCCATATCCTGTGCATATCTCCACCTCTTGGATTTCTCATCGTC
CTTGTCTTTGCCCCTTTTGTGGTCCTTATTCTTCTTCCACCTCCTTTTCT
TCTCCCCGCAGGCTTTGCACCGCTTCTCCGCAGCGGGATTCAGTAGCGTG
CAGGTACTACAGCCCCAAGGGGTAGCAGAACGAGGTGTCTCGCACATATC
ACAACACGCCGAAACACTGTCGTCCGCTTGCACATTGACAAACGTACACA
CCGGGCACGCCCACCTTTTCGTGGCTCGAGCTGCGGCGTGTGCCGGTGCT
CCCCCCCCTCTTCCGCCCCCTCTATCTTCCATGGCCATCAGATGAACCTG
CCTCCTTTCCTCGCCGACCTCGTTTGTTTCTAGACAGCCTCCGACATGGA
GCTAGCTCAAGAACAGTCTGTCTGCGTCAAACTCTTCCTGAATGGCGCAA
GTGGATGGGGTGGTATTGGTATGAGGTAGGCTCAAAACTGGGTCGAACCC
AAGCCTGAGGGGCCTCCACAGGCTGACAAAGCCTAGGACATTCAAAGATT
CGTTGTTCGTGCTTTATCTCTGGTTTTCTTTCAATTTTGGGCCCGCGCAA
GGGAGTTTACCGACGATAGAGCGAGGCGGCGAGGTGCTGGCAAGCAAGGT
GTGAATCATCACACGGACGTATTTCTCAACAACCCTTTGTTAAAGCCCCG
TCCGTCTTAAGACGGCTCTTAAAGACTCTCACACTTACACAGAATACACT
GTCTTGCCTGTGCAAGACCCATTGCCAGTGCTTGCAGTATAACCTGCAAG
TCATAGCCTCGTCTTATAATGTTGCTTTTTCTTCTTATCCTCTCTTGCTC
TTACACACGCACCACAGAAGCAACTAACAAGCGAGGACGCGTCTAGAATG
AAGGGAGCATTTGCTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCA
GGGTGCCGATGCCTTTGTGGGCTCCAGTTTTAAAGCCCGCAGACATGCTC
TGCCAAGGCTGCACGCCCGAAAGCCCGACCAGGTTTTCAACACCAAGGAG
TCTTTCGCCCCCATCATACCTGGCTTATCCGTTTCCCCCGACCTGCTAGA
CGTGAAGGAAATGGCCAAAGCCACTGCTTTCATGGCTCCGTTGGTATTGG
GGGCGTCGGATGCCATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAGGGA
CGAACGTTCGCCTTCGTCCACCCGACGGTGATGGGCATTTTGTTTTTGAC
GACTGCGTACACGGGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTACTC
TTGCGGGGGATATCAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCGGAT
GGCAGTAAAGTGACCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGAAGG
GGTATTGAAGAGCATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTAAGG
CTGATTTGAGTGTGTTGCGCTCGGCGACTGTCAAGGAGATCGATGCTCAA
GTGGCGGAGTTGAGCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTTCCG
GGACCGACATTATAACACCGCATCGACGCTACTGGGTCTTGGTGTCTTCA
CTTCCATCCTGGGTGGGTTCAACACGTTTTTCCGTGCTGGGAAGTTGTTC
CCCGGGCCCCACCTGTACGCTGGTGCGGGGATCACGGCTCTGTGGGCGGC
GGCTGCTGCGCTGGTACCGGCGATGCAGAAGGGGAATGACACGGCGAGAT
CTTTGCACATCGGTCTCAACGCCCTGAACATGGCGTTGTTTGCATGGCAG
GTGGGTACGGGGTTGGAGATTGCGATTAAAGTTTGGGGGTTCACGAAGTG
GCCGTAGAGAGGAGTGGAGGAAGGGACGGTACAGATGGCGGGGGCTGACG
GGGTAGGTGGGATACAAGAATGAACGGACACACGGCACACTACCTTTTCT
TGAGGGTTGGCTATTGTGTGGTAGCGAGTGATTGATTGAGTGAAGGAAGG
AAGGAGCGCAGATGTAGTTGAGATGTGATTGGGGGATGAGTATCGCTCCA
TACACGATTGAAGGCACAGCGACAACCATGACAATGACCTTTAGAGATAA
GCAATCCGTGACTGCTTAAGACGTGGAAAGAGGATTCATAGAGATGATGG
GGAGCTGAACACAAAAAGAAAACAGTTGTTCACAACAACAATTATAAAAA
TCCAATGGAAAAACGACACACTCCGTCAGAGCATCATC
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protein sequence of NO10G00840.1

>NO10G00840.1-protein ID=NO10G00840.1-protein|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MKGAFAVTALVLATASFQGADAFVGSSFKARRHALPRLHARKPDQVFNTK
ESFAPIIPGLSVSPDLLDVKEMAKATAFMAPLVLGASDAMAKGGEYGVLE
GRTFAFVHPTVMGILFLTTAYTGYLGWQWRSIRTLAGDINALKEALPKLS
DGSKVTMPVAKQIASVEGVLKSMGEGDEEAAQLKADLSVLRSATVKEIDA
QVAELSERRKALLSGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRAGKL
FPGPHLYAGAGITALWAAAAALVPAMQKGNDTARSLHIGLNALNMALFAW
QVGTGLEIAIKVWGFTKWP*
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mRNA from alignment at chr10:272980..276414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00840.1 ID=NO10G00840.1|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3435bp|location=Sequence derived from alignment at chr10:272980..276414+ (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTTTTCCTTCTCCTCGTCTGACCAAGACA
ACCGTACCCGCTTCTTCTTCTCCTTCTCCTCTTTCATCTTCCTCTCCCTC
CCCCTCCCCCCTCTCCTCCCTCCGGCCACGTTCCTCATCACCGCCTTGCC
AGCCCTCGAAAACGGCAACAGTAACTTCCCGTCCTCATCGGAATTCCGAA
CCCTCGCAAATACCCTCCTCCTCATCTCCTCCTCCTCATCCTCCCCCCCC
TCTCCTTCTTCTCCTCCTCCTCTCCCTCCATCTCCCTCGCTTGCAACGTC
AGGGCGAGCTGTGCATCTGCTTGGAGACGCAGTGCCCGCAGGCCTTCTTC
ATTCTCCAGCGTCAACTCGCCCTGGAACTCATCAATGTGGTCCCTGACAA
AATGCATGGTCTAGTATGTCAACGCGTGTGTATTCGCATGAGTCAATTAC
CAACATAGCACTCTTCAGCGTTTCGTTCTCCGTCCCTCCGTCCCTCCGTC
CCTCCGCCCCTCCGTCTCTCCCCCTCCTTTACACTCACCATGATCCGTCT
AGTACTATGCATTTTCCCGCAACATAAACACGTTAGCCTAGGATTACCAC
CTTTGACATCACCACTTGCGCTACTGTTGCTACTGCTACTGCTGGTAAGT
CCTGCGCCCCATACTTCATCGGAAGTGACGAACTCATTGAAAAGGGACAA
GGCGAACGCCTCCCGAGCCCGTAAATGGTTGTCGTCCTCGTTGTCGTCGT
CGTCTTCCTCCTTCCTCCATGCTGCTGCTTCCCGCATTATTTTGCTGGTG
CTGATGCGGAGGGGTTGTGACGTAGTCGAGACTGAGAAGGAGGGGGAGGA
GGAGGTGGAGATGGGGGGAGAAGGAGGAGAAGGAGGGGCGGGGGCCGGCA
TCTTTCGGTCTTCGTACACCAAGTCAGTGAGGTCACTGTTGCCCTTCTCC
TCGTTCTCCATATCCTGTGCATATCTCCACCTCTTGGATTTCTCATCGTC
CTTGTCTTTGCCCCTTTTGTGGTCCTTATTCTTCTTCCACCTCCTTTTCT
TCTCCCCGCAGGCTTTGCACCGCTTCTCCGCAGCGGGATTCAGTAGCGTG
CAGGTACTACAGCCCCAAGGGGTAGCAGAACGAGGTGTCTCGCACATATC
ACAACACGCCGAAACACTGTCGTCCGCTTGCACATTGACAAACGTACACA
CCGGGCACGCCCACCTTTTCGTGGCTCGAGCTGCGGCGTGTGCCGGTGCT
CCCCCCCCTCTTCCGCCCCCTCTATCTTCCATGGCCATCAGATGAACCTG
CCTCCTTTCCTCGCCGACCTCGTTTGTTTCTAGACAGCCTCCGACATGGA
GCTAGCTCAAGAACAGTCTGTCTGCGTCAAACTCTTCCTGAATGGCGCAA
GTGGATGGGGTGGTATTGGTATGAGGTAGGCTCAAAACTGGGTCGAACCC
AAGCCTGAGGGGCCTCCACAGGCTGACAAAGCCTAGGACATTCAAAGATT
CGTTGTTCGTGCTTTATCTCTGGTTTTCTTTCAATTTTGGGCCCGCGCAA
GGGAGTTTACCGACGATAGAGCGAGGCGGCGAGGTGCTGGCAAGCAAGGT
GTGAATCATCACACGGACGTATTTCTCAACAACCCTTTGTTAAAGCCCCG
TCCGTCTTAAGACGGCTCTTAAAGACTCTCACACTTACACAGAATACACT
GTCTTGCCTGTGCAAGACCCATTGCCAGTGCTTGCAGTATAACCTGCAAG
TCATAGCCTCGTCTTATAATGTTGCTTTTTCTTCTTATCCTCTCTTGCTC
TTACACACGCACCACAGAAGCAACTAACAAGCGAGGACGCGTCTAGAATG
AAGGGAGCATTTGCTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCA
GGGTGCCGATGCCTTTGTGGGCTCCAGTTTTAAAGGTGCGTTTGGCTGCG
GGTGGATTGGGGTTGGGTTTTGGTCGTGCGTGTGTGATTAGAGCCCCTTC
GTGTAGTCCTATCCGCGAGGTATGTCCCAGAGACCCTTCCCCCATCCGCC
CACACATTCACGTCTTCGTCTTTTAATGAAGGACCCTGTCAAAGCATGTA
CATCGCCAGCCAGCGTATGGCCTTGTCAACCTGACCACCGCCTCTCACCT
GCATCTACTCTTTTTCTCCCCACCACCCACAGCCCGCAGACATGCTCTGC
CAAGGCTGCACGCCCGAAAGCCCGACCAGGTTTTCAACACCAAGGAGTCT
TTCGCCCCCATCATACCTGGCTTATCCGTTTCCCCCGACCTGCTAGACGT
GAAGGAAATGGCCAAAGCCACTGCTTTCATGGCTCCGTTGGTATTGGGGG
CGTCGGATGCCATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAGGGACGA
ACGTTCGCCTTCGTCCACCCGACGGTGATGGGCATTTTGTTTTTGACGAC
TGCGTACACGGGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTACTCTTG
CGGGGGATATCAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCGGATGGC
AGTAAAGTGACCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGAAGGGGT
ATTGAAGAGCATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTAAGGCTG
ATTTGAGTGTGTTGCGCTCGGCGACTGTCAAGGAGATCGATGCTCAAGTG
GCGGAGTTGAGCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTTCCGGGA
CCGACATTATAACACCGCATCGACGCTACTGGGTCTTGGTGTCTTCACTT
CCATCCTGGGTGGGTTCAACACGTTTTTCCGTGCTGGGAAGTTGTTCCCC
GGGCCCCACCTGTACGCTGGTGCGGGGATCACGGCTCTGTGGGCGGCGGC
TGCTGCGCTGGTACCGGCGATGCAGAAGGGGAATGACACGGCGAGATCTT
TGCACATCGGTCTCAACGCCCTGAACATGGCGTTGTTTGCATGGCAGGTG
GGTACGGGGTTGGAGATTGCGATTAAAGTTTGGGGGTTCACGAAGTGGCC
GTAGAGAGGAGTGGAGGAAGGGACGGTACAGATGGCGGGGGCTGACGGGG
TAGGTGGGATACAAGAATGAACGGACACACGGCACACTACCTTTTCTTGA
GGGTTGGCTATTGTGTGGTAGCGAGTGATTGATTGAGTGAAGGAAGGAAG
GAGCGCAGATGTAGTTGAGATGTGATTGGGGGATGAGTATCGCTCCATAC
ACGATTGAAGGCACAGCGACAACCATGACAATGACCTTTAGAGATAAGCA
ATCCGTGACTGCTTAAGACGTGGAAAGAGGATTCATAGAGATGATGGGGA
GCTGAACACAAAAAGAAAACAGTTGTTCACAACAACAATTATAAAAATCC
AATGGAAAAACGACACACTCCGTCAGAGCATCATC
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Coding sequence (CDS) from alignment at chr10:272980..276414+

>NO10G00840.1 ID=NO10G00840.1|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr10:272980..276414+ (Nannochloropsis oceanica)
ATGAAGGGAGCATTTGCTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTT
CCAGGGTGCCGATGCCTTTGTGGGCTCCAGTTTTAAAGCCCGCAGACATG
CTCTGCCAAGGCTGCACGCCCGAAAGCCCGACCAGGTTTTCAACACCAAG
GAGTCTTTCGCCCCCATCATACCTGGCTTATCCGTTTCCCCCGACCTGCT
AGACGTGAAGGAAATGGCCAAAGCCACTGCTTTCATGGCTCCGTTGGTAT
TGGGGGCGTCGGATGCCATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAG
GGACGAACGTTCGCCTTCGTCCACCCGACGGTGATGGGCATTTTGTTTTT
GACGACTGCGTACACGGGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTA
CTCTTGCGGGGGATATCAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCG
GATGGCAGTAAAGTGACCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGA
AGGGGTATTGAAGAGCATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTA
AGGCTGATTTGAGTGTGTTGCGCTCGGCGACTGTCAAGGAGATCGATGCT
CAAGTGGCGGAGTTGAGCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTT
CCGGGACCGACATTATAACACCGCATCGACGCTACTGGGTCTTGGTGTCT
TCACTTCCATCCTGGGTGGGTTCAACACGTTTTTCCGTGCTGGGAAGTTG
TTCCCCGGGCCCCACCTGTACGCTGGTGCGGGGATCACGGCTCTGTGGGC
GGCGGCTGCTGCGCTGGTACCGGCGATGCAGAAGGGGAATGACACGGCGA
GATCTTTGCACATCGGTCTCAACGCCCTGAACATGGCGTTGTTTGCATGG
CAGGTGGGTACGGGGTTGGAGATTGCGATTAAAGTTTGGGGGTTCACGAA
GTGGCCGTAG
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Synonyms
Publications