NO10G00810.1, NO10G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00810.1
Unique NameNO10G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr10:265930..267123 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:265930..267123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00810.1 vs.
Match: XP_005855520.1 (n-terminal asparagine amidohydrolase [Nannochloropsis gaditana CCMP526]; EKU20839.1 n-terminal asparagine amidohydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 280.0 bits (715), Expect = 1.100e-71
Identity = 188/393 (47.84%), Postives = 223/393 (56.74%), Query Frame = 0 
Query:   10 RFLYVMQHEWAVVAPGEGIDYIASDEATTCHLVGIRERGGTGVVGLAHVDSPETVADLCAMETAVEDKVRALRGDDSAAG--------DTPLDLDIFIVGGYDGDSEAGLLTAVVLRHFASESPRTYNLQLALVSSLNTRVQPLSPALSSASAFAAAPTCRSLGFVLASAGERGERRDERGTLDPSKACIGVFTGDIPKNLRGPRHTLRALRLWGWGSRSLTHVQVKHKKHMKRRIEAELSTPQHYNLRIAKASNDISKEHSSSSSSSFSSSFSSSSTSVAAAAVVGEGEGGDEVFISIAPFRFKRSKNIHALSLLSDDDLVQETSTSPAIERPSFVQDIRRVLSLLSTATPEDFFGPSGMQALTVPLPRVDLVKVVREGEEREDEEGREKRR 395
            R LY+MQHEWAVV PG+ IDYI SD+ATTCHLVGIRE   TGVVGLAHVD+ E V DL A+E AV+ K   LR +  A            PL LD+F+VGGY+GDSE GLLTA +L+HF S S   YNLQLALVSSLNT   P   +  S +    AP CRSLGFV+            + +         V TGD+P++LRGP  TLRALRLWG GSR L  V++ H          E          IA +S     +  S  S S   S  S+S S              EV I I PFRF+ S++I AL+ L D+ L  ETSTSPAIE PSFV DIR VL +  TA PEDFFGP   Q L VPL  V+   ++   E +  EE R  RR
Sbjct:  116 RCLYIMQHEWAVVGPGDKIDYIVSDDATTCHLVGIREPC-TGVVGLAHVDAVEVVPDLVAVEDAVQ-KESMLRSESHAGNALGGFRRPTEPLTLDLFLVGGYEGDSEGGLLTAAILQHFQSTSVHKYNLQLALVSSLNTCTLPSVFSSPSMTPSVPAPLCRSLGFVIEPPRNPAAAAPSKASGSCDLFGAHVLTGDVPESLRGPMRTLRALRLWGRGSRRLVQVRLAHS-------PGEAGVAAFDQEEIANSSRCSRPQPKSCPSFSCPPSAPSASNS--------------EVSIVINPFRFRCSEDIKALACLEDEALKLETSTSPAIESPSFVSDIRAVLKMNQTAFPEDFFGPRVSQPLLVPLHAVEAATLL-TAESKGGEERRGNRR 484
The following BLAST results are available for this feature:
BLAST of NO10G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855520.11.100e-7147.84n-terminal asparagine amidohydrolase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00810NO10G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00810.1NO10G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00810.1.cds1NO10G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00810.1 ID=NO10G00810.1|Name=NO10G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ATGGTCAGACCTCACGACAACTGGAAACGCTTTCTGTACGTTATGCAGCA
TGAGTGGGCGGTTGTAGCGCCGGGCGAGGGGATTGATTACATCGCGAGCG
ACGAGGCAACGACGTGTCATTTGGTTGGCATAAGAGAGCGTGGTGGGACT
GGCGTGGTAGGCCTGGCGCATGTCGATTCCCCCGAGACGGTCGCTGATTT
GTGTGCAATGGAAACAGCCGTGGAAGACAAAGTTCGAGCTTTAAGAGGTG
ATGATAGCGCCGCCGGCGACACACCCTTGGACTTGGACATCTTCATCGTG
GGAGGGTACGATGGGGACAGCGAGGCGGGCCTCTTAACGGCGGTTGTCCT
GCGTCACTTCGCATCGGAGTCTCCAAGGACGTATAACTTGCAGCTTGCCC
TTGTTTCATCGCTGAATACACGCGTGCAGCCATTGTCCCCTGCCCTCTCG
TCGGCGAGTGCCTTTGCTGCTGCGCCCACTTGTCGCTCTCTGGGATTTGT
CCTCGCCTCCGCCGGCGAGAGAGGGGAAAGAAGGGATGAAAGAGGGACTC
TCGATCCCTCTAAAGCATGTATTGGAGTATTTACGGGTGATATCCCAAAA
AACCTGCGTGGCCCCAGGCACACCTTACGTGCACTCCGTCTGTGGGGATG
GGGCAGTAGGAGCCTCACGCACGTCCAAGTCAAGCATAAAAAACATATGA
AGAGGAGAATAGAAGCAGAGCTATCCACACCCCAACATTATAATCTCCGT
ATTGCCAAAGCTTCCAACGATATCTCTAAAGAGCACTCCTCTTCCTCCTC
GTCGTCCTTCTCTTCTTCCTTTTCCTCCTCTTCGACATCAGTAGCTGCAG
CAGCAGTAGTCGGAGAGGGAGAAGGAGGAGACGAAGTTTTCATTTCCATC
GCCCCCTTCCGCTTTAAACGCTCCAAAAACATCCACGCCCTCTCCCTTCT
CTCCGACGACGATCTGGTCCAAGAAACGTCCACCAGCCCTGCCATCGAGC
GTCCCTCGTTTGTGCAGGACATACGGAGAGTCTTATCCCTCCTCTCAACT
GCAACGCCAGAGGATTTTTTTGGGCCGTCAGGGATGCAGGCATTGACAGT
GCCCTTGCCGCGTGTGGATTTAGTCAAAGTTGTAAGGGAGGGGGAGGAGA
GAGAGGATGAGGAGGGGAGAGAGAAAAGGCGGGCTTTGCCATGA
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protein sequence of NO10G00810.1

>NO10G00810.1-protein ID=NO10G00810.1-protein|Name=NO10G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MVRPHDNWKRFLYVMQHEWAVVAPGEGIDYIASDEATTCHLVGIRERGGT
GVVGLAHVDSPETVADLCAMETAVEDKVRALRGDDSAAGDTPLDLDIFIV
GGYDGDSEAGLLTAVVLRHFASESPRTYNLQLALVSSLNTRVQPLSPALS
SASAFAAAPTCRSLGFVLASAGERGERRDERGTLDPSKACIGVFTGDIPK
NLRGPRHTLRALRLWGWGSRSLTHVQVKHKKHMKRRIEAELSTPQHYNLR
IAKASNDISKEHSSSSSSSFSSSFSSSSTSVAAAAVVGEGEGGDEVFISI
APFRFKRSKNIHALSLLSDDDLVQETSTSPAIERPSFVQDIRRVLSLLST
ATPEDFFGPSGMQALTVPLPRVDLVKVVREGEEREDEEGREKRRALP*
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mRNA from alignment at chr10:265930..267123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00810.1 ID=NO10G00810.1|Name=NO10G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp|location=Sequence derived from alignment at chr10:265930..267123+ (Nannochloropsis oceanica)
ATGGTCAGACCTCACGACAACTGGAAACGCTTTCTGTACGTTATGCAGCA
TGAGTGGGCGGTTGTAGCGCCGGGCGAGGGGATTGATTACATCGCGAGCG
ACGAGGCAACGACGTGTCATTTGGTTGGCATAAGAGAGCGTGGTGGGACT
GGCGTGGTAGGCCTGGCGCATGTCGATTCCCCCGAGACGGTCGCTGATTT
GTGTGCAATGGAAACAGCCGTGGAAGACAAAGTTCGAGCTTTAAGAGGTG
ATGATAGCGCCGCCGGCGACACACCCTTGGACTTGGACATCTTCATCGTG
GGAGGGTACGATGGGGACAGCGAGGCGGGCCTCTTAACGGCGGTTGTCCT
GCGTCACTTCGCATCGGAGTCTCCAAGGACGTATAACTTGCAGCTTGCCC
TTGTTTCATCGCTGAATACACGCGTGCAGCCATTGTCCCCTGCCCTCTCG
TCGGCGAGTGCCTTTGCTGCTGCGCCCACTTGTCGCTCTCTGGGATTTGT
CCTCGCCTCCGCCGGCGAGAGAGGGGAAAGAAGGGATGAAAGAGGGACTC
TCGATCCCTCTAAAGCATGTATTGGAGTATTTACGGGTGATATCCCAAAA
AACCTGCGTGGCCCCAGGCACACCTTACGTGCACTCCGTCTGTGGGGATG
GGGCAGTAGGAGCCTCACGCACGTCCAAGTCAAGCATAAAAAACATATGA
AGAGGAGAATAGAAGCAGAGCTATCCACACCCCAACATTATAATCTCCGT
ATTGCCAAAGCTTCCAACGATATCTCTAAAGAGCACTCCTCTTCCTCCTC
GTCGTCCTTCTCTTCTTCCTTTTCCTCCTCTTCGACATCAGTAGCTGCAG
CAGCAGTAGTCGGAGAGGGAGAAGGAGGAGACGAAGTTTTCATTTCCATC
GCCCCCTTCCGCTTTAAACGCTCCAAAAACATCCACGCCCTCTCCCTTCT
CTCCGACGACGATCTGGTCCAAGAAACGTCCACCAGCCCTGCCATCGAGC
GTCCCTCGTTTGTGCAGGACATACGGAGAGTCTTATCCCTCCTCTCAACT
GCAACGCCAGAGGATTTTTTTGGGCCGTCAGGGATGCAGGCATTGACAGT
GCCCTTGCCGCGTGTGGATTTAGTCAAAGTTGTAAGGGAGGGGGAGGAGA
GAGAGGATGAGGAGGGGAGAGAGAAAAGGCGGGCTTTGCCATGA
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Coding sequence (CDS) from alignment at chr10:265930..267123+

>NO10G00810.1 ID=NO10G00810.1|Name=NO10G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr10:265930..267123+ (Nannochloropsis oceanica)
ATGGTCAGACCTCACGACAACTGGAAACGCTTTCTGTACGTTATGCAGCA
TGAGTGGGCGGTTGTAGCGCCGGGCGAGGGGATTGATTACATCGCGAGCG
ACGAGGCAACGACGTGTCATTTGGTTGGCATAAGAGAGCGTGGTGGGACT
GGCGTGGTAGGCCTGGCGCATGTCGATTCCCCCGAGACGGTCGCTGATTT
GTGTGCAATGGAAACAGCCGTGGAAGACAAAGTTCGAGCTTTAAGAGGTG
ATGATAGCGCCGCCGGCGACACACCCTTGGACTTGGACATCTTCATCGTG
GGAGGGTACGATGGGGACAGCGAGGCGGGCCTCTTAACGGCGGTTGTCCT
GCGTCACTTCGCATCGGAGTCTCCAAGGACGTATAACTTGCAGCTTGCCC
TTGTTTCATCGCTGAATACACGCGTGCAGCCATTGTCCCCTGCCCTCTCG
TCGGCGAGTGCCTTTGCTGCTGCGCCCACTTGTCGCTCTCTGGGATTTGT
CCTCGCCTCCGCCGGCGAGAGAGGGGAAAGAAGGGATGAAAGAGGGACTC
TCGATCCCTCTAAAGCATGTATTGGAGTATTTACGGGTGATATCCCAAAA
AACCTGCGTGGCCCCAGGCACACCTTACGTGCACTCCGTCTGTGGGGATG
GGGCAGTAGGAGCCTCACGCACGTCCAAGTCAAGCATAAAAAACATATGA
AGAGGAGAATAGAAGCAGAGCTATCCACACCCCAACATTATAATCTCCGT
ATTGCCAAAGCTTCCAACGATATCTCTAAAGAGCACTCCTCTTCCTCCTC
GTCGTCCTTCTCTTCTTCCTTTTCCTCCTCTTCGACATCAGTAGCTGCAG
CAGCAGTAGTCGGAGAGGGAGAAGGAGGAGACGAAGTTTTCATTTCCATC
GCCCCCTTCCGCTTTAAACGCTCCAAAAACATCCACGCCCTCTCCCTTCT
CTCCGACGACGATCTGGTCCAAGAAACGTCCACCAGCCCTGCCATCGAGC
GTCCCTCGTTTGTGCAGGACATACGGAGAGTCTTATCCCTCCTCTCAACT
GCAACGCCAGAGGATTTTTTTGGGCCGTCAGGGATGCAGGCATTGACAGT
GCCCTTGCCGCGTGTGGATTTAGTCAAAGTTGTAAGGGAGGGGGAGGAGA
GAGAGGATGAGGAGGGGAGAGAGAAAAGGCGGGCTTTGCCATGA
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Synonyms
Publications