NO10G00730.1, NO10G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00730.1
Unique NameNO10G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2732
Alignment locationchr10:241934..244874 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:241934..244874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00730.1 vs.
Match: XP_005853577.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526]; EKU22781.1 wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.0 bits (341), Expect = 2.800e-28
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:  315 SSVGISVDLEDEDLLLQDAPNAFVCPISLQLMTRAVVAGDGYSYQREALDTWILRNRRERKPLRSPMTNAPMAPFYIPSFTLRSMVSDYVNTARASHRR 414
            +S+   V L  ED L   AP+AFVCPISL+LMTRAVVAGDG++YQ+EALD WIL+ RRE  PL SPMTNAPMAPFYIPSFTLRS++ DYV   R    R
Sbjct:  216 TSMEDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHSPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKRPR 314
The following BLAST results are available for this feature:
BLAST of NO10G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853577.12.800e-2866.67wd sam and u-box domain-containing protein 1 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00730NO10G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00730.1NO10G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00730.1.cds1NO10G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00730.1 ID=NO10G00730.1|Name=NO10G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2732bp
AAAAAAAAAAAAAAAAAAAAAGAAGCCCCTTCAATAAATGATGACCGTCT
TGACCCCATGCCGGCTCTTATCGAAAAAGCGAAAAAGTCGGCCTTAACAC
ACGTACGGGTCATTCTGTCAATCCCACCCTCCTGAGGCCCTCACACATAG
CGACCAGAACTTGATTTTTATCTCCGCGTACTATAGATCAAGCATTTCGC
AGATGTGACGCCCAAGAATGGAATAAATCTACGGCTCCCACATCAACAAA
CATAATTCCCAACCTCAAGTCTCTCTGCCCGTCGCACTTAATCCATTGCC
AAAAAACCGCGCTGGAAACTCGAGTGCCGCCGCATCCGTAAACTCTTCTA
ATTCCTATCATTCATGTCTCTGATTGTATCTGCAAGGTTTGGACTTCGCT
TGATGCCTTTGCTTGACGGTTGGGACATGCCACATGGCTCGCAGCGAGCC
GTCGGCTGTCCGCAATCTCCGCGCCCACAGAAAACAGAACACGCTAAAAT
GCAGAGAGAACGCGCAATTGATCACTACGATTTTCATTTGCCGCCTCCCT
GAACGAAGCCATTCACGCCAAGTCGCATGCATCGCCACTTTCTCCACAGG
AATCTTGTCAACGACAACCCAACCCGCGCCCAGCGCCACCCTTCACCATG
TCAAGCTATTCCCGCAACACGTGTTCTGTTGTGTCCCAAGGAGGGGGCAT
TAGTGGACTGGCCCATGGCACCGATCGAGGTGGAAATGCGCCCCTCGTCC
CGACGGCCTCTGTCAGCCTTCCGACCGCAACCACGCACTGCCCCCTTCTA
ATCCGTCCTGCGCATTCAGGCCGCAAGTCTTTTTCGGAGCACAGTTGTCC
TTGTGCGGCGCAAGATTCAACGCCGCGGCCTTAAAAGCCACCCGCCGCCT
CTCGTTCGTAATGCGGTCAACCGTGGGGGACTCATTATGTTTCACTTTCT
CCTCCTTATTCACTCTTCTCACGAATGACCTGGTGGATCTGTACGGGCGC
TCTTGTCCGTGAAGAGCCCTCGCATGTTGGCGGGCAATACGTGCCGCATC
AATACGGGCCGCATGGTACATGCTCACACCCTCTTTCCTTCTCCCTTCCG
ATCCAGGCCCTCTACCGCGCCCTTCTCCGCCTGGCCCCCAAGTGCAAAAC
CCACATCCAAGCCGTCTTTCGCTTCTTCAAGGTTCGCACAAAGCTCTCGC
ACCAACAAGTGCAGCAAATCCTTATTTCTGCCTTGGGTCTCGAGCTGGTA
CGTGAAGCATGGGCAGAAGCCCGGAAAGAGATTGATGGACATGCGGAGAT
GATGATGGCCGAAACGCCTCATCCCATGGATAGTAGCAATAGTAGCAGTA
GCAGTAGCAGTAGCAGTGGCAGCAGTGGAACCGCATCCTCTTTTCCCTCC
ATTTGTTTTCCCTCTTCTTCTATTTCGTCCTCGCCCCGTACTCAGTCCGC
GCATGCGATAACAATGGCTCAGCAGCAAGAACATCCGTGCGAGCAACAAC
GGCAGCATCAGCAACTGCAGCCGAACGCGACGGCCACTCACACCCGGCCC
CGCCCTTTGAGAAGGGAGGAGGAAGAAGAGCCGGTGCGGCGTGTGCAATT
AAATCCGGTGGTGTCCCGGGAGATGGAGCCTCAAGCGATGCGTTTCCAGC
AAAATACTGTGTCCTGGCATGCCAACGAGTCCCTATCTTTCTCTAACACG
GCCAGTGCCTCTGCTTCCGCTGCTGAGGAAGAGACGGGTATCTCCCTCGT
CTTAGTCTCCTTGTCCTGCCCTCCGTCCTCTCCCTCCTTGCACGGGGAGG
ACCAGTCCCCTCCCCAGGAAAGTACTACAAGCACCATTACTGCTGCCACG
CGTGCAGCAGCTGCAGCGATCTCGCCTGCTTCCTCCTCCATGGCCCCTCG
CTCTACCCCTCATGCCTCCTCCGTCGGCATCTCCGTCGACCTGGAGGATG
AGGACCTACTTCTCCAAGACGCGCCAAACGCCTTCGTGTGTCCCATTTCC
TTGCAGCTGATGACCCGTGCCGTCGTGGCGGGGGATGGATATTCCTACCA
GAGGGAGGCGCTGGACACCTGGATTCTCCGAAATAGGCGGGAGCGGAAGC
CGCTGCGCTCGCCCATGACAAATGCGCCGATGGCCCCTTTCTATATCCCA
TCATTTACCCTCCGGAGCATGGTGAGCGATTATGTTAATACTGCGAGAGC
CAGTCATAGGCGGGAGAAGGGGGGGGCGCATGTGGTGGAAGACTGAGAGG
AGGAGGAGGAAGAGGAAGAGAGGATAGATGCTGGATTGTAAGTTAGAAGA
GGATTTCTTGTTGATGGAGTGGAGAGCAAATGTCAAAATAAGGGAGTGAC
GCCGGAAGGCGAGCGACATGAGATTGTGTATTTATTGGAGGAGAATAAAT
GGAAGCAGAAGAAGAATAGAAGAGGTCCGCACGCTTTGATTTGTAATGTA
AATAGTGTGCCTGAGGAGGGCGGGACAGAGGTGCTTAACATCTCAAACAA
AGCGACACAATGAAATCTTTTTAGCTCTTTACGGACAATGGAAACACATA
GATAAGGTATTAAGGCGTTGGAACGGATTACATATTTTTTTACAGCCGTA
GCACCCCAAAGAAACCCAGGAAATTGTCGATGATGCAAGAGAGAAAAAAA
GAAAATATCAGTGCCGCTACATATACCGAAACAGTTTTATGTTTATGCTA
CGACAACTTCTTAAATTGATGTATTCGAGTTG
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protein sequence of NO10G00730.1

>NO10G00730.1-protein ID=NO10G00730.1-protein|Name=NO10G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MTWWICTGALVREEPSHVGGQYVPHQYGPHGTCSHPLSFSLPIQALYRAL
LRLAPKCKTHIQAVFRFFKVRTKLSHQQVQQILISALGLELVREAWAEAR
KEIDGHAEMMMAETPHPMDSSNSSSSSSSSSGSSGTASSFPSICFPSSSI
SSSPRTQSAHAITMAQQQEHPCEQQRQHQQLQPNATATHTRPRPLRREEE
EEPVRRVQLNPVVSREMEPQAMRFQQNTVSWHANESLSFSNTASASASAA
EEETGISLVLVSLSCPPSSPSLHGEDQSPPQESTTSTITAATRAAAAAIS
PASSSMAPRSTPHASSVGISVDLEDEDLLLQDAPNAFVCPISLQLMTRAV
VAGDGYSYQREALDTWILRNRRERKPLRSPMTNAPMAPFYIPSFTLRSMV
SDYVNTARASHRREKGGAHVVED*
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mRNA from alignment at chr10:241934..244874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00730.1 ID=NO10G00730.1|Name=NO10G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2941bp|location=Sequence derived from alignment at chr10:241934..244874- (Nannochloropsis oceanica)
AAAAAAAAAAAAAAAAAAAAAGAAGCCCCTTCAATAAATGATGACCGTCT
TGACCCCATGCCGGCTCTTATCGAAAAAGCGAAAAAGTCGGCCTTAACAC
ACGTACGGGTCATTCTGTCAATCCCACCCTCCTGAGGCCCTCACACATAG
CGACCAGAACTTGATTTTTATCTCCGCGTACTATAGATCAAGCATTTCGC
AGATGTGACGCCCAAGAATGGAATAAATCTACGGCTCCCACATCAACAAA
CATAATTCCCAACCTCAAGTCTCTCTGCCCGTCGCACTTAATCCATTGCC
AAAAAACCGCGCTGGAAACTCGAGTGCCGCCGCATCCGTAAACTCTTCTA
ATTCCTATCATTCATGTCTCTGATTGTATCTGCAAGGTTTGGACTTCGCT
TGATGCCTTTGCTTGACGGTTGGGACATGCCACATGGCTCGCAGCGAGCC
GTCGGCTGTCCGCAATCTCCGCGCCCACAGAAAACAGAACACGCTAAAAT
GCAGAGAGAACGCGCAATTGATCACTACGATTTTCATTTGCCGCCTCCCT
GAACGAAGCCATTCACGCCAAGTCGCATGCATCGCCACTTTCTCCACAGG
AATCTTGTCAACGACAACCCAACCCGCGCCCAGCGCCACCCTTCACCATG
TCAAGCTATTCCCGCAACACGTGTTCTGTTGTGTCCCAAGGAGGGGGCAT
TAGTGGACTGGCCCATGGCACCGATCGAGGTGGAAATGCGCCCCTCGTCC
CGACGGCCTCTGTCAGCCTTCCGACCGCAACCACGCACTGCCCCCTTCTA
ATCCGTCCTGCGCATTCAGGCCGCAAGTCTTTTTCGGAGGTAAGCTCTGT
TTGAGACAATTTAATGGGGAGGTGGGCCCTCTATCAGGCGGGGAATCGGT
AGCTCGTCTCAAACAGAACGCAACGACGTGTATAGGTGTCTCGGAGGCTT
TCCCAGCAATTGCATATGCCTCTATCCTACTCACATGCATGTATAGAGCT
GCAGTCTTACTGCAAGTAGCCGCTCCTGTCTATTCCTCCTCCCTCTAGCA
CAGTTGTCCTTGTGCGGCGCAAGATTCAACGCCGCGGCCTTAAAAGCCAC
CCGCCGCCTCTCGTTCGTAATGCGGTCAACCGTGGGGGACTCATTATGTT
TCACTTTCTCCTCCTTATTCACTCTTCTCACGAATGACCTGGTGGATCTG
TACGGGCGCTCTTGTCCGTGAAGAGCCCTCGCATGTTGGCGGGCAATACG
TGCCGCATCAATACGGGCCGCATGGTACATGCTCACACCCTCTTTCCTTC
TCCCTTCCGATCCAGGCCCTCTACCGCGCCCTTCTCCGCCTGGCCCCCAA
GTGCAAAACCCACATCCAAGCCGTCTTTCGCTTCTTCAAGGTTCGCACAA
AGCTCTCGCACCAACAAGTGCAGCAAATCCTTATTTCTGCCTTGGGTCTC
GAGCTGGTACGTGAAGCATGGGCAGAAGCCCGGAAAGAGATTGATGGACA
TGCGGAGATGATGATGGCCGAAACGCCTCATCCCATGGATAGTAGCAATA
GTAGCAGTAGCAGTAGCAGTAGCAGTGGCAGCAGTGGAACCGCATCCTCT
TTTCCCTCCATTTGTTTTCCCTCTTCTTCTATTTCGTCCTCGCCCCGTAC
TCAGTCCGCGCATGCGATAACAATGGCTCAGCAGCAAGAACATCCGTGCG
AGCAACAACGGCAGCATCAGCAACTGCAGCCGAACGCGACGGCCACTCAC
ACCCGGCCCCGCCCTTTGAGAAGGGAGGAGGAAGAAGAGCCGGTGCGGCG
TGTGCAATTAAATCCGGTGGTGTCCCGGGAGATGGAGCCTCAAGCGATGC
GTTTCCAGCAAAATACTGTGTCCTGGCATGCCAACGAGTCCCTATCTTTC
TCTAACACGGCCAGTGCCTCTGCTTCCGCTGCTGAGGAAGAGACGGGTAT
CTCCCTCGTCTTAGTCTCCTTGTCCTGCCCTCCGTCCTCTCCCTCCTTGC
ACGGGGAGGACCAGTCCCCTCCCCAGGAAAGTACTACAAGCACCATTACT
GCTGCCACGCGTGCAGCAGCTGCAGCGATCTCGCCTGCTTCCTCCTCCAT
GGCCCCTCGCTCTACCCCTCATGCCTCCTCCGTCGGCATCTCCGTCGACC
TGGAGGATGAGGACCTACTTCTCCAAGACGCGCCAAACGCCTTCGTGTGT
CCCATTTCCTTGCAGCTGATGACCCGTGCCGTCGTGGCGGGGGATGGATA
TTCCTACCAGAGGGAGGCGCTGGACACCTGGATTCTCCGAAATAGGCGGG
AGCGGAAGCCGCTGCGCTCGCCCATGACAAATGCGCCGATGGCCCCTTTC
TATATCCCATCATTTACCCTCCGGAGCATGGTGAGCGATTATGTTAATAC
TGCGAGAGCCAGTCATAGGCGGGAGAAGGGGGGGGCGCATGTGGTGGAAG
ACTGAGAGGAGGAGGAGGAAGAGGAAGAGAGGATAGATGCTGGATTGTAA
GTTAGAAGAGGATTTCTTGTTGATGGAGTGGAGAGCAAATGTCAAAATAA
GGGAGTGACGCCGGAAGGCGAGCGACATGAGATTGTGTATTTATTGGAGG
AGAATAAATGGAAGCAGAAGAAGAATAGAAGAGGTCCGCACGCTTTGATT
TGTAATGTAAATAGTGTGCCTGAGGAGGGCGGGACAGAGGTGCTTAACAT
CTCAAACAAAGCGACACAATGAAATCTTTTTAGCTCTTTACGGACAATGG
AAACACATAGATAAGGTATTAAGGCGTTGGAACGGATTACATATTTTTTT
ACAGCCGTAGCACCCCAAAGAAACCCAGGAAATTGTCGATGATGCAAGAG
AGAAAAAAAGAAAATATCAGTGCCGCTACATATACCGAAACAGTTTTATG
TTTATGCTACGACAACTTCTTAAATTGATGTATTCGAGTTG
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Coding sequence (CDS) from alignment at chr10:241934..244874-

>NO10G00730.1 ID=NO10G00730.1|Name=NO10G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr10:241934..244874- (Nannochloropsis oceanica)
ATGACCTGGTGGATCTGTACGGGCGCTCTTGTCCGTGAAGAGCCCTCGCA
TGTTGGCGGGCAATACGTGCCGCATCAATACGGGCCGCATGGTACATGCT
CACACCCTCTTTCCTTCTCCCTTCCGATCCAGGCCCTCTACCGCGCCCTT
CTCCGCCTGGCCCCCAAGTGCAAAACCCACATCCAAGCCGTCTTTCGCTT
CTTCAAGGTTCGCACAAAGCTCTCGCACCAACAAGTGCAGCAAATCCTTA
TTTCTGCCTTGGGTCTCGAGCTGGTACGTGAAGCATGGGCAGAAGCCCGG
AAAGAGATTGATGGACATGCGGAGATGATGATGGCCGAAACGCCTCATCC
CATGGATAGTAGCAATAGTAGCAGTAGCAGTAGCAGTAGCAGTGGCAGCA
GTGGAACCGCATCCTCTTTTCCCTCCATTTGTTTTCCCTCTTCTTCTATT
TCGTCCTCGCCCCGTACTCAGTCCGCGCATGCGATAACAATGGCTCAGCA
GCAAGAACATCCGTGCGAGCAACAACGGCAGCATCAGCAACTGCAGCCGA
ACGCGACGGCCACTCACACCCGGCCCCGCCCTTTGAGAAGGGAGGAGGAA
GAAGAGCCGGTGCGGCGTGTGCAATTAAATCCGGTGGTGTCCCGGGAGAT
GGAGCCTCAAGCGATGCGTTTCCAGCAAAATACTGTGTCCTGGCATGCCA
ACGAGTCCCTATCTTTCTCTAACACGGCCAGTGCCTCTGCTTCCGCTGCT
GAGGAAGAGACGGGTATCTCCCTCGTCTTAGTCTCCTTGTCCTGCCCTCC
GTCCTCTCCCTCCTTGCACGGGGAGGACCAGTCCCCTCCCCAGGAAAGTA
CTACAAGCACCATTACTGCTGCCACGCGTGCAGCAGCTGCAGCGATCTCG
CCTGCTTCCTCCTCCATGGCCCCTCGCTCTACCCCTCATGCCTCCTCCGT
CGGCATCTCCGTCGACCTGGAGGATGAGGACCTACTTCTCCAAGACGCGC
CAAACGCCTTCGTGTGTCCCATTTCCTTGCAGCTGATGACCCGTGCCGTC
GTGGCGGGGGATGGATATTCCTACCAGAGGGAGGCGCTGGACACCTGGAT
TCTCCGAAATAGGCGGGAGCGGAAGCCGCTGCGCTCGCCCATGACAAATG
CGCCGATGGCCCCTTTCTATATCCCATCATTTACCCTCCGGAGCATGGTG
AGCGATTATGTTAATACTGCGAGAGCCAGTCATAGGCGGGAGAAGGGGGG
GGCGCATGTGGTGGAAGACTGA
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Synonyms
Publications