NO10G00550.1, NO10G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00550.1
Unique NameNO10G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length462
Alignment locationchr10:186957..187418 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:186957..187418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00550.1 vs.
Match: OWZ07541.1 (Major Facilitator Superfamily (MFS) transporter [Phytophthora megakarya])

HSP 1 Score: 72.4 bits (176), Expect = 1.400e-9
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0 
Query:    1 MQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            +Q+P MEALFADS  PG+RS  F  KY +      +GP  ++ +FW  G+EW L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  119 IQSPAMEALFADSIPPGKRSFPFMIKYNISNVAQMLGPALNIFLFWFYGDEWQLPELKLVLEFGCVLGVIGSFILFQFDDDHAKDYL 205
The following BLAST results are available for this feature:
BLAST of NO10G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OWZ07541.11.400e-941.38Major Facilitator Superfamily (MFS) transporter [P... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00550NO10G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00550.1NO10G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00550.1.cds1NO10G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00550.1 ID=NO10G00550.1|Name=NO10G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
ATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGACCCAGG
ACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAGCGGGGT
GTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTGGGAAAT
GAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGATGGTATT
GGTGCTCTTACCGACGACATTGTGTTTTCGGTTTGATGACGAAAAGGACC
ATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTGGCTTCA
AAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTTGGTAGG
AGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAAAGGAGG
AGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATGGAATGC
TTTTACGTCTAG
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protein sequence of NO10G00550.1

>NO10G00550.1-protein ID=NO10G00550.1-protein|Name=NO10G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGN
EWILEACQYVIVAGMVLVLLPTTLCFRFDDEKDHLTLSPATRAAVRRVAS
KRRQEIEGGKSRQVLVGEEQSRSRAVLVEGKKEEGEEELMQHHATAGMEC
FYV*
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mRNA from alignment at chr10:186957..187418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00550.1 ID=NO10G00550.1|Name=NO10G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=462bp|location=Sequence derived from alignment at chr10:186957..187418+ (Nannochloropsis oceanica)
ATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGACCCAGG
ACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAGCGGGGT
GTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTGGGAAAT
GAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGATGGTATT
GGTGCTCTTACCGACGACATTGTGTTTTCGGTTTGATGACGAAAAGGACC
ATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTGGCTTCA
AAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTTGGTAGG
AGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAAAGGAGG
AGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATGGAATGC
TTTTACGTCTAG
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Coding sequence (CDS) from alignment at chr10:186957..187418+

>NO10G00550.1 ID=NO10G00550.1|Name=NO10G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr10:186957..187418+ (Nannochloropsis oceanica)
ATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGACCCAGG
ACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAGCGGGGT
GTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTGGGAAAT
GAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGATGGTATT
GGTGCTCTTACCGACGACATTGTGTTTTCGGTTTGATGACGAAAAGGACC
ATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTGGCTTCA
AAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTTGGTAGG
AGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAAAGGAGG
AGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATGGAATGC
TTTTACGTCTAG
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Synonyms
Publications